Difference between revisions of "Limnology"
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'''[mailto:jonathan.velotta@uconn.edu Jon Velotta]'''(Teaching Assistant)<br> | '''[mailto:jonathan.velotta@uconn.edu Jon Velotta]'''(Teaching Assistant)<br> | ||
− | Email: jonathan. | + | Email: jonathan.velotta@uconn.edu<br> |
Office: Biology/Pharmacy 210<br> | Office: Biology/Pharmacy 210<br> | ||
Phone: (860) 486-4694 <br> | Phone: (860) 486-4694 <br> | ||
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<br> | <br> | ||
− | :{{pdf|http://hydrodictyon.eeb.uconn.edu/ | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/a/ab/3247_Fall_13_syllabus.pdf}} Limnology Syllabus Fall 2013<br> |
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==Policies== | ==Policies== | ||
[[Image:Catskills.jpg|right|Photo by J.M. Rack]] | [[Image:Catskills.jpg|right|Photo by J.M. Rack]] | ||
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<br> | <br> | ||
'''Lateness policy'''<br> | '''Lateness policy'''<br> | ||
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|- | |- | ||
− | | Aug 27 || Lecture 1 || Syllabus; Introduction to limnology || D, Ch. 1|| | + | | Aug 27 || Lecture 1 || Syllabus; Introduction to limnology || D, Ch. 1|| {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/c/c6/Lecture_1_Introduction.pdf}} Intro || |
− | ||| | + | |
|- | |- | ||
− | | Aug 29 || Lecture 2 || Ecology and evolution; Lab notebooks || | + | | Aug 29 || Lecture 2 || Ecology and evolution; Lab notebooks ||||[http://Hydrodictyon.eeb.uconn.edu/people/urban/Tadpoleplasticity.wmv Tadpole video] | {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/f/f0/Lecture_2_Ecology_and_evolution.pdf}} Ecology and Evolution || |
|- | |- | ||
− | | Aug 29 || Lab 1 || Phys./Chem. Sampling, Dunham Pond || | + | | Aug 29 || Lab 1 || Phys./Chem. Sampling, Dunham Pond ||||||| |
|- | |- | ||
− | | Sept 3 || Lecture 3 || Ecology and Evolution / Lake formation || D, Ch. 11|| [http://www.extremeicesurvey.org/index.php/new_gallery/timelapse_142/ Glacier video] | + | | Sept 3 || Lecture 3 || Ecology and Evolution / Lake formation || D, Ch. 11|| [http://www.extremeicesurvey.org/index.php/new_gallery/timelapse_142/ Glacier video] {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/2/25/Lecture_3_Origins_of_Lakes.pdf}} Origins of Lakes ||| |
|- | |- | ||
− | | Sept 5 || Lecture 4 || Lake formation; create Kettle pond/Hydrology and water properties || | + | | Sept 5 || Lecture 4 || Lake formation; create Kettle pond/Hydrology and water properties || ||{{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/b/bb/Lecture_4_Hydrology_and_water.pdf}} Hydrology and Water ||| |
|- | |- | ||
− | | Sept 5 || Lab 2 || Zooplankton Sampling, Dunham Pond || || | + | | Sept 5 || Lab 2 || Zooplankton Sampling, Dunham Pond || || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/5/5e/Macroinvertebrate_Key.pdf}} Macroinvert Key ||| |
|- | |- | ||
− | | Sept 10 || Lecture 5 || | + | | Sept 10 || Lecture 5 || No class || D, Ch. 2|| ||| |
|- | |- | ||
− | | Sept 12 || Lecture 6 || Temperature gradients|| || | + | | Sept 12 || Lecture 6 || Temperature gradients|| || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/4/43/Lecture_6-Temperature_gradients.pdf}} Temp gradients ||| |
|- | |- | ||
| Sept 12 || Lab 3 || Zooplankton ID || || ||| | | Sept 12 || Lab 3 || Zooplankton ID || || ||| | ||
|- | |- | ||
− | | Sept 17 || Lecture 7 || Light and oxygen || D, Ch. 10 || ||| | + | | Sept 17 || Lecture 7 || Light and oxygen || D, Ch. 10 || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/5/5c/Lecture_7_-_Light_and_oxygen.pdf}} Light and Oxygen ||| |
|- | |- | ||
− | | Sept 19 || Lecture 8 || Chemical limnology | + | | Sept 19 || Lecture 8 || Chemical limnology || D, Ch. 3-5|| {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/b/ba/Lecture_8_-_Chemical_limnology.pdf}} Chemical Limno || |
|- | |- | ||
| Sept 19 || Lab 4 || Swan Lake sampling || || ||| | | Sept 19 || Lab 4 || Swan Lake sampling || || ||| | ||
|- | |- | ||
− | | Sept 24 || Lecture 9 || Populations in Lakes || D, Ch. 6 || | + | | Sept 24 || Lecture 9 || Populations in Lakes; Proposals || D, Ch. 6 || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/4/42/Lecture_9_-_Populations_in_lakes_2013.pdf}} Populations in Lakes||| |
|- | |- | ||
− | | Sept 26 || Lecture 10 || Species Interactions in Lakes || D, Ch. 7|| ||| | + | | Sept 26 || Lecture 10 || Species Interactions in Lakes || D, Ch. 7|| {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/6/64/Lecture_10_-_Species_interactions_in_lakes_2013.pdf}} Species Interactions in Lakes||| |
|- | |- | ||
− | | Sept 26 || Lab 5 || Zooplankton ID || || | + | | Sept 26 || Lab 5 || Zooplankton ID || || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/d/dd/Proposals-2013.pdf}} Proposal Info ||| |
|- | |- | ||
| Oct 1 || Lecture 10 || Species Interactions || D, Ch. 8|| ||| | | Oct 1 || Lecture 10 || Species Interactions || D, Ch. 8|| ||| | ||
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| Oct 10 || Lab || Time allotted for student independent projects || || ||| | | Oct 10 || Lab || Time allotted for student independent projects || || ||| | ||
|- | |- | ||
− | | Oct 15 || Lecture 12 || Lake ecosystems || || ||| | + | | Oct 15 || Lecture 12 || Lake ecosystems || || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/a/af/Lecture_12_-_Lake_Ecosystems.pdf}} Lake ecosystems ||| |
|- | |- | ||
− | | Oct 17 || Lecture 13 || Wetland habitats: permanence transition || || | + | | Oct 17 || Lecture 13 || Wetland habitats: permanence transition || || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/4/48/Lecture_13_-_Wetland_habitats.pdf}} Wetland habitats ||| |
|- | |- | ||
| Oct 17 || Lab 7 || Pond Invertebrate ID || || ||| | | Oct 17 || Lab 7 || Pond Invertebrate ID || || ||| | ||
|- | |- | ||
− | | Oct 22 || Lecture 14 || Amphibian ecology and evolution || || | + | | Oct 22 || Lecture 14 || Amphibian ecology and evolution || || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/2/2c/Lecture_14-_Amphibian_ecology_%26_evolution_small.pdf}} Amphibian ecology and evolution ||| |
|- | |- | ||
| Oct 24 || Lecture 15 || Service: strategies for macrophyte control || || ||| | | Oct 24 || Lecture 15 || Service: strategies for macrophyte control || || ||| | ||
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| Oct 24 || Lab 8 || Stream mapping || || ||| | | Oct 24 || Lab 8 || Stream mapping || || ||| | ||
|- | |- | ||
− | | Oct 29 || Lecture 16 || Stream Environments || GM, Ch. 1|| | + | | Oct 29 || Lecture 16 || Stream Environments || GM, Ch. 1|| {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/7/72/Lecture_16_-_Stream_environments_small.pdf}} Stream environments ||| |
|- | |- | ||
− | | Oct 31 || Lecture 17 || Key Factors in Streams I || GM, Ch. 2|| ||| | + | | Oct 31 || Lecture 17 || Key Factors in Streams I || GM, Ch. 2|| {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/7/76/Lecture_17_-_Key_factors_in_streams_I.pdf}} Key factors in streams I ||| |
|- | |- | ||
| Oct 31 || Lab 9 || Stream Biota Sampling || || ||| | | Oct 31 || Lab 9 || Stream Biota Sampling || || ||| | ||
|- | |- | ||
− | | Nov 5 || Lecture 18 || Key Factors in Streams II || GM, Ch. 3, 5|| | + | | Nov 5 || Lecture 18 || Key Factors in Streams II || GM, Ch. 3, 5|| {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/3/35/Lecture_18_-_Key_factors_in_streams_II.pdf}} Key factors in streams II ||| |
|- | |- | ||
− | | Nov 7 || Lecture 19 || | + | | Nov 7 || Lecture 19 || Stream energy || || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/f/fa/Lecture_19_stream_energy.pdf}} Stream energy ||| |
|- | |- | ||
| Nov 7 || Lab 10|| Time allotted for student independent projects || || ||| | | Nov 7 || Lab 10|| Time allotted for student independent projects || || ||| | ||
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| Nov 12 || Lecture 20 || Autotrophy/Heterotrophy || GM, Ch. 6|| ||| | | Nov 12 || Lecture 20 || Autotrophy/Heterotrophy || GM, Ch. 6|| ||| | ||
|- | |- | ||
− | | Nov 14 || Lecture 21 || Stream Communities || GM, Ch. 4, 7-9|| ||| | + | | Nov 14 || Lecture 21 || Stream Communities || GM, Ch. 4, 7-9 || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/3/39/Lecture_21_Stream_communities_1.pdf}} Stream communities ||| |
|- | |- | ||
| Nov 14 || Lab 11 || Stream ID|| || ||| | | Nov 14 || Lab 11 || Stream ID|| || ||| | ||
|- | |- | ||
− | | Nov 19 || Lecture 22 || Stream Ecosystems || GM, Ch. 8,9 || ||| | + | | Nov 19 || Lecture 22 || Stream Ecosystems || GM, Ch. 8,9 || {{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/1/1e/Lecture_22_Stream_communities_%26_ecosystems.pdf}} Stream communities and ecosystems ||| |
|- | |- | ||
| Nov 21|| Lecture 23 || Conservation challenges I || || ||| | | Nov 21|| Lecture 23 || Conservation challenges I || || ||| | ||
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| Dec 5 || Lab || Project Presentations || || ||| | | Dec 5 || Lab || Project Presentations || || ||| | ||
|- | |- | ||
− | |<span style="font-size: small"><font color="#FF3300">'''Dec | + | |<span style="font-size: small"><font color="#FF3300">'''Dec'''</font></span>||<span style="font-size: small"><font color="#FF3300">'''FINAL EXAM'''</font></span> || ---------- | |
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|} | |} | ||
<br><br><br><br> | <br><br><br><br> | ||
+ | |||
+ | [[Image:Lilypads.JPG|right|Photo by A. Shepack]] | ||
+ | [[Image:Charismatic.JPG|right|Photo by A. Shepack]] | ||
+ | [[Image:Sampling.jpg|right|Photo by J.M. Rack]] | ||
==Additional Resources== | ==Additional Resources== |
Latest revision as of 17:24, 23 November 2013
EEB 3247 Limnology
Fall 2013
Lecture Meeting Time: Tuesdays and Thursdays, 9:30 - 10:45 in TLS 179
Lab Meeting Time: Thursdays 12:00 - 4:00 in TLS 179
Textbooks: Dodson S.I., 2005. Introduction to Limnology 1st Edition. McGraw-Hill.
Giller P.S. and B. Malmqvist, 2008. The Biology of Streams and Rivers. Oxford University Press.
Contents
Instructors
Dr. Mark Urban
Email: mark.urban@uconn.edu
Office: Biology/Pharmacy 200A
Phone: (860) 486-6113
Office hours: by appointment
Jon Velotta(Teaching Assistant)
Email: jonathan.velotta@uconn.edu
Office: Biology/Pharmacy 210
Phone: (860) 486-4694
Office hours: by appointment
Course Procedures
Overview of Course:
The main objective of the course is to introduce you to the dominant physical, chemical, and biological mechanisms determining the ecology of inland waters. A secondary objective is to teach field sampling and research techniques pertinent to aquatic research. Classes will integrate lectures on core concepts with field and laboratory experiences In addition, an independent research project would be used to integrate concepts and also allow students to design, implement, analyze and communicate their own scientific research.
Limnology can be taught with various foci. I teach the course as an upper level ecology class focused on aquatic systems. If you have not taken ecology or evolution, you may need to do some supplementary work to catch up. See me within the first week to discuss this possibility.
- Field and lab exercises are mandatory. Field trips cannot be made up. If for some reason you think that you will be unable to make any field trips, consult with me in advance.
- We will leave for field trips at exactly 12 pm. Please arrive at the lab on time.
- This is a field course. Ecologists go out regardless of the weather, and so will we. You are responsible for bringing appropriate rain or cold weather gear.
- This is a field course. Ecologists go out regardless of the weather, and so will we. You are responsible for bringing appropriate rain or cold weather gear.
- We will leave for field trips at exactly 12 pm. Please arrive at the lab on time.
Reading:
The two texts for the course are listed below. Both can be purchased from online sources such as Amazon.com or at the UConn Co-op.
Dodson, Stanley. 2005. Introduction to Limnology. McGraw Hill. ISBN: 007287935-3
Giller, Paul & Bjorn Malmqvist. 2008. The Biology of Streams and Rivers. Oxford University Press. ISBN: 0198549772
Class requirements and grading:
You must attend each class. Your grade will be based on two exams, completion of lab reports, a group research project and participation in field and lab exercises:
Midterm and Final Exams: 50
Lab Reports (2): 20
Research Project: 20
Participation/Quizzes: 10
TOTAL: 100 pts
Notes on class requirements:
- The two exams will cover material covered in both lectures and labs. The final exam will be cumulative. Also expect one or more pop quizzes on reading materials.
- I require lab reports which provide succinct descriptions and analyses of data collected during lab and field exercises.
- You will also have time to perform a field or laboratory research project, of your design but requiring my permission. These projects can be performed individually or in small groups (3-maximum). Results will be presented by all individuals during the last lab meeting.
- Participation means showing up, completing all assigned readings on time, and actively taking part in lectures and labs.
- All students must adhere to all safety intructions at all times, especially while on water bodies, or you will be prevented from further participation.
Policies
Lateness policy
Assignments will lose 10 percentage points for every 24-hour period that they are late. For example, an assignment that would have received a 100% had it been handed in on time will receive a 60% (an F) if it is handed in 4 days late. Only a note from a physician or the Dean sent to me in advance of the due date will be accepted as a valid excuse.
Missed field trips/labs
Missed field trips or labs cannot be made up and will result in lost points unless the absence has been approved by me at least one week in advance or with a note from the physician or the Dean sent to me in advance of the field trip or lab. If you must miss a field trip or lab because of a legitimate school-sponsored activity or religious observance, then you must seek my permission at least one week in advance. In all approved cases, an equivalent activity will be assigned.
Plagiarism/Cheating
Plagiarism means using someone else’s statement word-for-word without quotation marks (even if you cite it) or using someone else’s ideas, even if you have paraphrased them, without proper attribution of credit through a citation. The penalty for plagiarism on your research project is a zero. Do not plagiarize – I run all of your written work through software that detects plagiarism.
All plagiarism and cheating will be dealt with in the severest manner possible, meaning a zero on affected assignments and referral to the Dean’s office.
Lecture and Lab Schedule & Materials
Date | Type | Lecture or Lab Topic | Reading | Supplemental Materials | |
---|---|---|---|---|---|
Aug 27 | Lecture 1 | Syllabus; Introduction to limnology | D, Ch. 1 | ![]() |
|
Aug 29 | Lecture 2 | Ecology and evolution; Lab notebooks | ![]() |
||
Aug 29 | Lab 1 | Phys./Chem. Sampling, Dunham Pond | |||
Sept 3 | Lecture 3 | Ecology and Evolution / Lake formation | D, Ch. 11 | Glacier video ![]() |
|
Sept 5 | Lecture 4 | Lake formation; create Kettle pond/Hydrology and water properties | ![]() |
||
Sept 5 | Lab 2 | Zooplankton Sampling, Dunham Pond | ![]() |
||
Sept 10 | Lecture 5 | No class | D, Ch. 2 | ||
Sept 12 | Lecture 6 | Temperature gradients | ![]() |
||
Sept 12 | Lab 3 | Zooplankton ID | |||
Sept 17 | Lecture 7 | Light and oxygen | D, Ch. 10 | ![]() |
|
Sept 19 | Lecture 8 | Chemical limnology | D, Ch. 3-5 | ![]() |
|
Sept 19 | Lab 4 | Swan Lake sampling | |||
Sept 24 | Lecture 9 | Populations in Lakes; Proposals | D, Ch. 6 | ![]() |
|
Sept 26 | Lecture 10 | Species Interactions in Lakes | D, Ch. 7 | ![]() |
|
Sept 26 | Lab 5 | Zooplankton ID | ![]() |
||
Oct 1 | Lecture 10 | Species Interactions | D, Ch. 8 | ||
Oct 3 | Lecture 11 | Lake Communities | D, Ch. 9 | ||
Oct 3 | Lab 6 | Fenton Sampling | Lake Lab Due | ||
Oct 8 | Catch-up; Review Session | ||||
Oct 10 | EXAM | --- | Midterm Exam | ||
Oct 10 | Lab | Time allotted for student independent projects | |||
Oct 15 | Lecture 12 | Lake ecosystems | ![]() |
||
Oct 17 | Lecture 13 | Wetland habitats: permanence transition | ![]() |
||
Oct 17 | Lab 7 | Pond Invertebrate ID | |||
Oct 22 | Lecture 14 | Amphibian ecology and evolution | ![]() |
||
Oct 24 | Lecture 15 | Service: strategies for macrophyte control | |||
Oct 24 | Lab 8 | Stream mapping | |||
Oct 29 | Lecture 16 | Stream Environments | GM, Ch. 1 | ![]() |
|
Oct 31 | Lecture 17 | Key Factors in Streams I | GM, Ch. 2 | ![]() |
|
Oct 31 | Lab 9 | Stream Biota Sampling | |||
Nov 5 | Lecture 18 | Key Factors in Streams II | GM, Ch. 3, 5 | ![]() |
|
Nov 7 | Lecture 19 | Stream energy | ![]() |
||
Nov 7 | Lab 10 | Time allotted for student independent projects | |||
Nov 12 | Lecture 20 | Autotrophy/Heterotrophy | GM, Ch. 6 | ||
Nov 14 | Lecture 21 | Stream Communities | GM, Ch. 4, 7-9 | ![]() |
|
Nov 14 | Lab 11 | Stream ID | |||
Nov 19 | Lecture 22 | Stream Ecosystems | GM, Ch. 8,9 | ![]() |
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Nov 21 | Lecture 23 | Conservation challenges I | |||
Nov 21 | Lab 12 | Revisit lake chemistry; service class | Stream Lab Due | ||
Dec 3 | Lecture 24 | Conservation challenges II | |||
Dec 5 | Lecture 25 | Catch-up; Review | Project Papers Due | ||
Dec 5 | Lab | Project Presentations | |||
Dec | FINAL EXAM |
Additional Resources
American Society of Limnology and Oceanography
Association of State Wetland Managers
International Society of Limnology
North American Benthological Society
North American Lake Management Society
North American Native Fishes Association
Society of Wetland Scientists
Water Web Consortium