|
|
| Line 17: |
Line 17: |
| | | | |
| | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Bossu_Near_2009_SysBio.pdf}}Bossu_Near_2009_SysBio.pdf | | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Bossu_Near_2009_SysBio.pdf}}Bossu_Near_2009_SysBio.pdf |
| − |
| |
| − | === Tuesday, September 15th, 2009 ===
| |
| − |
| |
| − | Discussion Leader: Elizabeth Timpe
| |
| − |
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Bonett%20and%20Chippindale%202004.pdf}}Bonett and Chippindale 2004.pdf
| |
| − |
| |
| − | === Tuesday, September 22nd, 2009 ===
| |
| − |
| |
| − | Discussion leaders: Nic Tippery and Dave Wagner
| |
| − |
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Whitfield-etal-2006_Apis-biogeog.pdf}}Whitfield et al. 2006. Thrice Out of Africa: Ancient and Recent Expansions of the Honey Bee, ''Apis mellifera''. ''Science'' 314: 642-645.
| |
| − |
| |
| − | http://www.sciencemag.org/cgi/content/abstract/314/5799/642
| |
| − |
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Albrecht-etal-2007_Dreissena-native.pdf}}Albrecht et al. 2007. Invaders or endemics? Molecular phylogenetics, biogeography and systematics of ''Dreissena'' in the Balkans. ''Freshwater Biology'' 52: 1525-1536.
| |
| − |
| |
| − | http://www3.interscience.wiley.com/journal/117962459/abstract
| |
| − |
| |
| − | === Tuesday, September 29th, 2009 ===
| |
| − |
| |
| − | Discussion leader: Chris Owen
| |
| − |
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Clark_et_al-2008-SystBio.pdf}}Clark_et_al-2008-SystBio.pdf
| |
| − |
| |
| − | === Tuesday, October 6th, 2009 ===
| |
| − | Discussion leader: Daniel Fan
| |
| − |
| |
| − | We will continue talking about Dispersal-Extinction-Cladogesis (DEC) model this week. In 2005, Ree et al. proposed the initial version of DEC although this approach was not named at that time. In 2008, Ree and Smith developed it and published a paper in Sys. Bio., which might be thought as the second version. The paper we will read is about the third version of DEC, likelihood with fossil, and they call it DEC*.
| |
| − |
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Moore_2009_.pdf}}Moore et al. 2009. Incorporating Fossil Data in Biogeographic Inference: A Likelihood Approach.
| |
| − |
| |
| − | === Tuesday, October 13th, 2009 ===
| |
| − |
| |
| − | Juan Carlos Villarreal
| |
| − |
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Santos.etal.2009.Plosbiolo.pdf}}Santos.etal.2009.Plosbiolo.pdf
| |
| − |
| |
| − | I would recommend to check Figure S6 (supplements are available online).
| |
| − |
| |
| − | http://www.plosbiology.org/article/info:doi%2F10.1371%2Fjournal.pbio.1000056;jsessionid=697A5A8835708B33E83085CE4729FB59
| |
| − |
| |
| − | The next paper is optional. It talks about priors for molecular dating analyses. Simon Ho has published a more recent paper on the topic, this is shorter/simpler.
| |
| − |
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/ho.2007.j.avianbiol..pdf}}ho.2007.j.avianbiol..pdf
| |
| − |
| |
| − | === Tuesday, October 20th, 2009 ===
| |
| − | Discussion Leader: Roberta
| |
| − |
| |
| − | {{pdf|http://www.bioone.org/doi/abs/10.1111/j.1558-5646.2008.00566.x}}
| |
| − | Hurt et al. 2009 A MULTILOCUS TEST OF SIMULTANEOUS DIVERGENCE ACROSS THE ISTHMUS OF PANAMA USING SNAPPING SHRIMP IN THE GENUS ALPHEUS
| |
| − |
| |
| − | === Tuesday, October 27th, 2009 ===
| |
| − | Discussion leader: Geert Goemans
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Himes%20et%20al%202008.pdf}}Himes et al 2008.pdf
| |
| − |
| |
| − | === Tuesday, November 3rd, 2009 ===
| |
| − | Discussion leader: Nic Tippery
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Nielsen-Beaumont-2009_phylogeog.pdf}}Nielsen, R. and M. A. Beaumont. 2009. Statistical inferences in phylogeography. Molecular Ecology 18: 1034-1047.
| |
| − | http://www3.interscience.wiley.com/journal/121681049/abstract?CRETRY=1&SRETRY=0
| |
| − |
| |
| − | === Tuesday, November 10th, 2009 ===
| |
| − | Discussion Leader: Beth Wade
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemmon%20Lemmon%202008%20Phylomapper.pdf}}Lemmon Lemmon 2008 Phylomapper.pdf
| |
| − |
| |
| − | === Tuesday, November 17th, 2009 ===
| |
| − | Discussion leader: Karolina Fučíková
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/PNAS%20Brawley%202009.pdf}} Brawley et al. 2009.pdf
| |
| − |
| |
| − | === Tuesday, December 1st, 2009 ===
| |
| − | Discussion Leader: Dave Wagner
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/McKenna%20and%20Farrell.pdf}}McKenna and Farrell.pdf
| |
| − |
| |
| − | === Tuesday, December 8th, 2009 ===
| |
| − | Discussion Leader: Chris Owen
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Moore%20%26%20Donoghue%202009.pdf}}Moore & Donoghue 2009.pdf
| |
| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Supplementary%20Material.pdf}}Supplementary Material.pdf
| |
| | | | |
| | | | |
| Line 99: |
Line 22: |
| | | | |
| | == Past Systematics Seminars == | | == Past Systematics Seminars == |
| | + | * [[Systematics Seminar Fall 2009|Fall 2009]] |
| | * [[Systematics Seminar Fall 2008|Fall 2008]] | | * [[Systematics Seminar Fall 2008|Fall 2008]] |
| | * [[Systematics Seminar Spring 2008|Spring 2008]] | | * [[Systematics Seminar Spring 2008|Spring 2008]] |
This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.
This semester we will focus on speciation and hybridization, then transition into phylogeography/ historical biogeography. Random papers/ themes, however, are welcomed.
Bossu_Near_2009_SysBio.pdf
