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| | We are meeting this semester in the '''Bamford Room (TLS 171B) Tuesdays 4-5pm'''. | | We are meeting this semester in the '''Bamford Room (TLS 171B) Tuesdays 4-5pm'''. |
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| − | == Theme for Fall Semester 2010 == | + | == Theme for Spring Semester 2011 == |
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| − | The theme for this semester will be decided at the organizational meeting.
| + | Kent Holsinger will be organizing this semester's Systematics Seminar around the topic of Phylogeography. Please go to the following wiki page for the schedule: |
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| − | == Schedule for Fall Semester 2010 ==
| + | [http://darwin.eeb.uconn.edu/wiki/index.php/Phylogeography] |
| − | '''Note: the papers linked here require a user name and password to access.''' If you have forgotten the user name and/or password, contact [mailto:paul.lewis@uconn.edu Paul Lewis]. If you want to upload a PDF file for an upcoming discussion, use the [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/upload.html Systematics Seminar PDF upload form]. Uploading PDFs requires the same user name and password as viewing PDFs.
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| − | === Tuesday, August 31, 2010: ===
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| − | Organizational meeting.
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| − | === Tuesday, September 07, 2010: ===
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| − | Discussion leader: [[Chris Owen]]<br/>
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| − | This week we will take a look at a new method to infer phylogeographic history on a continuous landscape.
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202010%20MBE.pdf}}Lemey et al. 2010 MBE.pdf
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| − | === Tuesday, September 14, 2010: ===
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| − | Discussion leader: [[Geert]]<br/>
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| − | This paper uses the previous version of the model discussed by Chris last week.
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/a/a1/Chapter4_ThesisFinalMarske.pdf}}Chapter4 Marske Thesis.pdf
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Marske%20Thesis%20Refereces.pdf}}Marske Thesis References.pdf
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| − | === Tuesday, September 21, 2010: ===
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| − | Discussion leader: [[Marc Suchard]]<br/>
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202009%20bayesian%20phylogeo%20sm.pdf}}Lemey et al. 2009 bayesian phylogeo sm.pdf
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| − | === Tuesday, September 28, 2010: ===
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| − | Discussion leader:JCarlos Villarreal
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/smith2009.biogeography.opt4.pdf}} Smith, S. A. 2009. Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographic analysis of the Northern Hemisphere plant clade Caprifolieae. Journal of Biogeography. http://blackrim.org/projects/biogeography
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| − | === Tuesday, October 5, 2010: ===
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| − | Discussion leader:
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemmon%20et%20al.%202009%20missing%20data.pdf}}Lemmon et al. 2009 missing data.pdf
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| − | === Tuesday, October 12, 2010: ===
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| − | Discussion leader: Elizabeth Timpe<br>
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| − | ::{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Wiens_Moen_JSE_2008.pdf}}Wiens_Moen_JSE_2008.pdf
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| − | === Tuesday, October 19, 2010: ===
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| − | Discussion leader: Beth Wade<br>
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Waters%202010%20SysBio%20gene%20tree%20vs%20spp%20tree.pdf}}Waters 2010 SysBio gene tree vs spp tree.pdf
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| − | === Tuesday, October 26, 2010: ===
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| − | Discussion leader: Daniel Fan<br>
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/evansetal2009.pdf}}Evans et al. 2009.pdf
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| − | === Tuesday, November 9, 2010: ===
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| − | Discussion leader: Cory Merow<br>
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20DDI%20final_single.pdf}}Elith et al 2011 DDI final_single.pdf
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| − | Appendices
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20online%20appendices%20final.pdf}}Elith et al 2011 online appendices final.pdf
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| − | Sample data files for case study 2. I won't be running through this, but in case you're interested....
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al_data%20for%20CaseStudy2.zip}}Elith et al_data for CaseStudy2.zip
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| − | === Tuesday, November 16, 2010: ===
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| − | Discussion leader: [[Chris Owen]]<br>
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| − | This week we will look at the effects of unequal gene sampling on phylogenetic reconstruction.
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| − | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Choo%20et%20al.%202010.pdf}}Choo et al. 2010.pdf
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| − | === Tuesday, November 30, 2010: ===
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| − | Discussion leader: [[JC Villarreal]]<br>
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| − | {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Jian.etal.2008.systbiol.pdf}}Jian.etal.2008.systbiol.pdf
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| | == Past Systematics Seminars == | | == Past Systematics Seminars == |
| | + | * [[Systematics Seminar Fall 2010|Fall 2010]] |
| | * [[Systematics Seminar Spring 2010|Spring 2010]] | | * [[Systematics Seminar Spring 2010|Spring 2010]] |
| | * [[Systematics Seminar Fall 2009|Fall 2009]] | | * [[Systematics Seminar Fall 2009|Fall 2009]] |
This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.
Kent Holsinger will be organizing this semester's Systematics Seminar around the topic of Phylogeography. Please go to the following wiki page for the schedule:
