User contributions
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- 03:11, 23 April 2020 (diff | hist) . . (+135) . . Phylogenetics: RevBayes Lab (→Login to Xanadu)
- 23:54, 21 April 2020 (diff | hist) . . (+105) . . Phylogenetics: RevBayes Lab (→Obtaining credible intervals under the prior)
- 23:46, 21 April 2020 (diff | hist) . . (+846) . . Phylogenetics: RevBayes Lab (→Obtaining credible intervals under the prior)
- 23:35, 21 April 2020 (diff | hist) . . (+784) . . Phylogenetics: RevBayes Lab (→Obtaining credible intervals under the prior)
- 18:11, 21 April 2020 (diff | hist) . . (+788) . . Phylogenetics: RevBayes Lab (→Obtaining credible intervals under the prior)
- 15:45, 21 April 2020 (diff | hist) . . (+1,555) . . Phylogenetics: RevBayes Lab (→Review results of the divergence time analysis)
- 15:25, 21 April 2020 (diff | hist) . . (+423) . . Phylogenetics: RevBayes Lab (→Divergence times)
- 14:56, 21 April 2020 (diff | hist) . . (+99) . . Phylogenetics: RevBayes Lab (→Divergence times)
- 14:51, 21 April 2020 (diff | hist) . . (+256) . . Phylogenetics: RevBayes Lab (→Review results of the divergence time analysis)
- 14:46, 21 April 2020 (diff | hist) . . (+593) . . Phylogenetics: RevBayes Lab
- 14:42, 21 April 2020 (diff | hist) . . (+4,096) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 22:44, 20 April 2020 (diff | hist) . . (+1,039) . . Phylogenetics: RevBayes Lab (→Review results of the relaxed clock analysis)
- 22:27, 20 April 2020 (diff | hist) . . (+262) . . Phylogenetics: RevBayes Lab (→Reviewing results of the relaxed clock analysis)
- 22:23, 20 April 2020 (diff | hist) . . (-85) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 22:21, 20 April 2020 (diff | hist) . . (-318) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 21:59, 20 April 2020 (diff | hist) . . (+86) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 20:08, 20 April 2020 (diff | hist) . . (+155) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 20:06, 20 April 2020 (diff | hist) . . (0) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 20:05, 20 April 2020 (diff | hist) . . (+87) . . Phylogenetics: RevBayes Lab (→Finalize the PhyloCTMC)
- 20:03, 20 April 2020 (diff | hist) . . (+489) . . Phylogenetics: RevBayes Lab (→Reviewing the strict clock results)
- 19:45, 20 April 2020 (diff | hist) . . (+333) . . Phylogenetics: RevBayes Lab (→Finalize the PhyloCTMC)
- 19:41, 20 April 2020 (diff | hist) . . (+167) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 17:12, 20 April 2020 (diff | hist) . . (+425) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 17:09, 20 April 2020 (diff | hist) . . (+1) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 17:09, 20 April 2020 (diff | hist) . . (+75) . . Phylogenetics: RevBayes Lab
- 17:04, 20 April 2020 (diff | hist) . . (0) . . N File:Lognormal.png (current)
- 17:04, 20 April 2020 (diff | hist) . . (+39) . . Phylogenetics: RevBayes Lab
- 16:39, 20 April 2020 (diff | hist) . . (+2,574) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 16:08, 20 April 2020 (diff | hist) . . (+50) . . Phylogenetics: RevBayes Lab (→Reviewing the strict clock results)
- 16:03, 20 April 2020 (diff | hist) . . (+151) . . Phylogenetics: RevBayes Lab (→Relaxed clocks)
- 15:59, 20 April 2020 (diff | hist) . . (+266) . . Phylogenetics: RevBayes Lab (→Reviewing the strict clock results)
- 15:49, 20 April 2020 (diff | hist) . . (+909) . . Phylogenetics: RevBayes Lab (→Checking the results)
- 15:43, 20 April 2020 (diff | hist) . . (+1,485) . . Phylogenetics: RevBayes Lab (→Checking the results)
- 15:27, 20 April 2020 (diff | hist) . . (+142) . . Phylogenetics: RevBayes Lab (→Checking the results)
- 15:24, 20 April 2020 (diff | hist) . . (+2) . . Phylogenetics: RevBayes Lab (→Set up MCMC)
- 15:24, 20 April 2020 (diff | hist) . . (+8) . . Phylogenetics: RevBayes Lab (→Set up MCMC)
- 15:24, 20 April 2020 (diff | hist) . . (+47) . . Phylogenetics: RevBayes Lab (→Set up the tree submodel)
- 15:21, 20 April 2020 (diff | hist) . . (+8) . . Phylogenetics: RevBayes Lab (→Set up the substitution submodel)
- 15:18, 20 April 2020 (diff | hist) . . (-90) . . Phylogenetics: RevBayes Lab (→Simulate sequences)
- 15:17, 20 April 2020 (diff | hist) . . (+66) . . Phylogenetics: RevBayes Lab (→Simulate sequences)
- 15:16, 20 April 2020 (diff | hist) . . (+742) . . Phylogenetics: RevBayes Lab (→Simulate sequences)
- 15:06, 20 April 2020 (diff | hist) . . (+92) . . Phylogenetics: RevBayes Lab (→Simulate sequences)
- 15:04, 20 April 2020 (diff | hist) . . (+64) . . Phylogenetics: RevBayes Lab (→Simulate a tree)
- 15:03, 20 April 2020 (diff | hist) . . (+37) . . Phylogenetics: RevBayes Lab (→Simulate a tree)
- 15:01, 20 April 2020 (diff | hist) . . (+18) . . Phylogenetics: RevBayes Lab (→Simulate a tree)
- 15:00, 20 April 2020 (diff | hist) . . (+1) . . Phylogenetics: RevBayes Lab (→Simulate sequences)
- 14:58, 20 April 2020 (diff | hist) . . (+11) . . Phylogenetics: RevBayes Lab (→Set up MCMC)
- 14:58, 20 April 2020 (diff | hist) . . (+14) . . Phylogenetics: RevBayes Lab (→Set up monitors)
- 14:58, 20 April 2020 (diff | hist) . . (+16) . . Phylogenetics: RevBayes Lab (→Finalize the PhyloCTMC)
- 14:57, 20 April 2020 (diff | hist) . . (+15) . . Phylogenetics: RevBayes Lab (→Set up the substitution submodel)
- 14:57, 20 April 2020 (diff | hist) . . (+18) . . Phylogenetics: RevBayes Lab (→Set up the strict clock submodel)
- 21:52, 19 April 2020 (diff | hist) . . (+28) . . Phylogenetics: RevBayes Lab (→Run RevBayes)
- 21:42, 19 April 2020 (diff | hist) . . (+4,007) . . Phylogenetics: RevBayes Lab
- 21:14, 19 April 2020 (diff | hist) . . (+1,142) . . Phylogenetics: RevBayes Lab
- 21:04, 19 April 2020 (diff | hist) . . (+3,082) . . Phylogenetics: RevBayes Lab (→Create the strict.Rev file)
- 20:29, 19 April 2020 (diff | hist) . . (+5) . . Phylogenetics: RevBayes Lab (→Create the strict.Rev file)
- 20:28, 19 April 2020 (diff | hist) . . (+1,575) . . Phylogenetics: RevBayes Lab (→PAML evolver)
- 19:56, 19 April 2020 (diff | hist) . . (-31) . . Phylogenetics: RevBayes Lab
- 17:58, 19 April 2020 (diff | hist) . . (+1,194) . . Phylogenetics: RevBayes Lab (→Simulating and analyzing under the strict clock model)
- 17:40, 19 April 2020 (diff | hist) . . (-31) . . Phylogenetics: RevBayes Lab (→Load the PAML module)
- 17:36, 19 April 2020 (diff | hist) . . (+623) . . Phylogenetics: RevBayes Lab (→Creating a control file for indelible)
- 17:22, 19 April 2020 (diff | hist) . . (-717) . . Phylogenetics: RevBayes Lab (→Downloading and compiling indelible)
- 17:19, 19 April 2020 (diff | hist) . . (-87) . . Phylogenetics: RevBayes Lab (→Creating a control file for indelible)
- 15:04, 19 April 2020 (diff | hist) . . (-74) . . Phylogenetics: RevBayes Lab (→Creating a control file for indelible)
- 14:53, 19 April 2020 (diff | hist) . . (+1,957) . . Phylogenetics: RevBayes Lab (→Simulating and analyzing under the strict clock model)
- 14:15, 19 April 2020 (diff | hist) . . (+796) . . Phylogenetics: RevBayes Lab (→Create a directory)
- 13:50, 19 April 2020 (diff | hist) . . (+1,569) . . N Phylogenetics: RevBayes Lab (Created page with "{| border="0" |- |rowspan="2" valign="top"|150px |<span style="font-size: x-large">[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Phylogenetics:_S...")
- 14:14, 18 April 2020 (diff | hist) . . (+1) . . Phylogenetics: R Primer (→Importing packages) (current)
- 16:28, 14 April 2020 (diff | hist) . . (0) . . Phylogenetics: APE Lab (→Reading in trees from a file and exploring tree data structure)
- 16:19, 13 April 2020 (diff | hist) . . (+32) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 16:18, 13 April 2020 (diff | hist) . . (+161) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 16:14, 13 April 2020 (diff | hist) . . (-11) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 16:13, 13 April 2020 (diff | hist) . . (+376) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 16:01, 13 April 2020 (diff | hist) . . (+1) . . Phylogenetics: APE Lab (→Phylogenetic Generalized Least Squares (PGLS) regression)
- 16:01, 13 April 2020 (diff | hist) . . (-3) . . Phylogenetics: APE Lab (→Phylogenetic Generalized Least Squares (PGLS) regression)
- 15:56, 13 April 2020 (diff | hist) . . (0) . . Phylogenetics: APE Lab (→Label interior nodes with the contrasts)
- 15:54, 13 April 2020 (diff | hist) . . (+57) . . Phylogenetics: APE Lab (→Compute independent contrasts)
- 15:51, 13 April 2020 (diff | hist) . . (+5) . . Phylogenetics: APE Lab (→Compute independent contrasts)
- 15:49, 13 April 2020 (diff | hist) . . (+15) . . Phylogenetics: APE Lab (→Enter the tree)
- 15:44, 13 April 2020 (diff | hist) . . (-1) . . Phylogenetics: APE Lab (→Independent contrasts)
- 15:43, 13 April 2020 (diff | hist) . . (-1) . . Phylogenetics: APE Lab (→Independent contrasts)
- 15:43, 13 April 2020 (diff | hist) . . (+8) . . Phylogenetics: APE Lab (→Independent contrasts)
- 15:15, 13 April 2020 (diff | hist) . . (+40) . . Phylogenetics: APE Lab (→Lineage through time plots)
- 15:10, 13 April 2020 (diff | hist) . . (-123) . . Phylogenetics: APE Lab (→Plot tree as an unrooted or radial tree)
- 15:09, 13 April 2020 (diff | hist) . . (-7) . . Phylogenetics: APE Lab (→Color the edges)
- 15:08, 13 April 2020 (diff | hist) . . (0) . . Phylogenetics: APE Lab (→Color the edges)
- 15:07, 13 April 2020 (diff | hist) . . (+373) . . Phylogenetics: APE Lab (→Color the edges)
- 15:04, 13 April 2020 (diff | hist) . . (-403) . . Phylogenetics: APE Lab (→Make the edges thicker)
- 15:03, 13 April 2020 (diff | hist) . . (+403) . . Phylogenetics: APE Lab (→Make the edges thicker)
- 14:55, 13 April 2020 (diff | hist) . . (0) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 14:55, 13 April 2020 (diff | hist) . . (+222) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 14:51, 13 April 2020 (diff | hist) . . (+121) . . Phylogenetics: APE Lab (→Reading in trees from a file and exploring tree data structure)
- 14:47, 13 April 2020 (diff | hist) . . (+247) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 14:44, 13 April 2020 (diff | hist) . . (+5) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 14:44, 13 April 2020 (diff | hist) . . (+134) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 14:43, 13 April 2020 (diff | hist) . . (+36) . . Phylogenetics: APE Lab (→Installing APE and apTreeshape)
- 18:28, 10 April 2020 (diff | hist) . . (+147) . . Phylogenetics: SMap lab (→ML analysis of the self-incompatibility trait) (current)
- 18:04, 10 April 2020 (diff | hist) . . (+513) . . Phylogenetics: SMap lab (→Tour of the output files)
- 15:23, 10 April 2020 (diff | hist) . . (+3) . . Phylogenetics: SMap lab (→Finishing up)
- 15:23, 10 April 2020 (diff | hist) . . (+68) . . Phylogenetics: SMap lab (→Plotting the merged stochastic mapping results)
- 15:22, 10 April 2020 (diff | hist) . . (+18) . . Phylogenetics: SMap lab (→Plotting the merged stochastic mapping results)
- 15:21, 10 April 2020 (diff | hist) . . (+1,870) . . Phylogenetics: SMap lab (→Performing a D test)
- 01:42, 10 April 2020 (diff | hist) . . (-39) . . Phylogenetics: SMap lab
- 01:41, 10 April 2020 (diff | hist) . . (+1) . . Phylogenetics: SMap lab
- 01:40, 10 April 2020 (diff | hist) . . (+182) . . Phylogenetics: SMap lab (→Literature Cited)
- 01:38, 10 April 2020 (diff | hist) . . (+1,547) . . Phylogenetics: SMap lab (→Conclusions)
- 01:18, 10 April 2020 (diff | hist) . . (+251) . . Phylogenetics: SMap lab (→Perform the D test)
- 01:16, 10 April 2020 (diff | hist) . . (+319) . . Phylogenetics: SMap lab (→Merge the two traits)
- 01:13, 10 April 2020 (diff | hist) . . (+356) . . Phylogenetics: SMap lab (→Perform the D test)
- 01:09, 10 April 2020 (diff | hist) . . (+1,142) . . Phylogenetics: SMap lab (→Merge the two traits)
- 01:01, 10 April 2020 (diff | hist) . . (+12) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 01:01, 10 April 2020 (diff | hist) . . (+66) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 01:00, 10 April 2020 (diff | hist) . . (+2,186) . . Phylogenetics: SMap lab (→Performing a D test)
- 00:28, 10 April 2020 (diff | hist) . . (+818) . . Phylogenetics: SMap lab (→Stochastic mapping for the flower type trait)
- 23:03, 9 April 2020 (diff | hist) . . (+542) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 19:04, 9 April 2020 (diff | hist) . . (+5) . . Phylogenetics: SMap lab (→Tour of the output files)
- 19:03, 9 April 2020 (diff | hist) . . (-1,902) . . Phylogenetics: SMap lab (→Making sMap easier to invoke)
- 18:57, 9 April 2020 (diff | hist) . . (+52) . . Phylogenetics: SMap lab (→Create aliases)
- 18:57, 9 April 2020 (diff | hist) . . (+486) . . Phylogenetics: SMap lab (→Tour of the output files)
- 18:45, 9 April 2020 (diff | hist) . . (+251) . . Phylogenetics: SMap lab (→Minimal Example)
- 18:14, 9 April 2020 (diff | hist) . . (0) . . Phylogenetics: SMap lab (→Literature Cited)
- 18:13, 9 April 2020 (diff | hist) . . (+4) . . Phylogenetics: SMap lab (→Literature Cited)
- 18:11, 9 April 2020 (diff | hist) . . (+38) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 18:10, 9 April 2020 (diff | hist) . . (+3) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 17:32, 9 April 2020 (diff | hist) . . (+71) . . Phylogenetics: SMap lab (→ML analysis of the self-incompatibility trait)
- 17:30, 9 April 2020 (diff | hist) . . (+237) . . Phylogenetics: SMap lab (→ML analysis of the self-incompatibility trait)
- 17:23, 9 April 2020 (diff | hist) . . (+498) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 17:16, 9 April 2020 (diff | hist) . . (+41) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 16:59, 9 April 2020 (diff | hist) . . (+5) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 16:58, 9 April 2020 (diff | hist) . . (+165) . . Phylogenetics: SMap lab (→Mating system trait)
- 16:55, 9 April 2020 (diff | hist) . . (-1) . . Phylogenetics: SMap lab (→Two traits)
- 16:54, 9 April 2020 (diff | hist) . . (-38) . . Phylogenetics: SMap lab (→Two traits)
- 16:53, 9 April 2020 (diff | hist) . . (+5) . . Phylogenetics: SMap lab (→Two traits)
- 16:32, 9 April 2020 (diff | hist) . . (+122) . . Phylogenetics: SMap lab (→Two traits)
- 16:30, 9 April 2020 (diff | hist) . . (-5) . . Phylogenetics: SMap lab (→Downloading the data for the tutorial)
- 16:28, 9 April 2020 (diff | hist) . . (+71) . . Phylogenetics: SMap lab (→Tour of the output files)
- 14:03, 9 April 2020 (diff | hist) . . (+369) . . Phylogenetics: SMap lab (→Tour of the output files)
- 12:42, 9 April 2020 (diff | hist) . . (-35) . . Phylogenetics: SMap lab (→Tour of the output files)
- 12:39, 9 April 2020 (diff | hist) . . (+51) . . Phylogenetics: SMap lab (→Tour of the output files)
- 12:37, 9 April 2020 (diff | hist) . . (+30) . . Phylogenetics: SMap lab (→Tour of the output files)
- 12:35, 9 April 2020 (diff | hist) . . (-4) . . Phylogenetics: SMap lab (→Tour of the output files)
- 12:35, 9 April 2020 (diff | hist) . . (+104) . . Phylogenetics: SMap lab (→Tour of the output files)
- 12:25, 9 April 2020 (diff | hist) . . (+33) . . Phylogenetics: SMap lab (→Minimal Example)
- 12:22, 9 April 2020 (diff | hist) . . (+27) . . Phylogenetics: SMap lab (→Minimal Example)
- 12:21, 9 April 2020 (diff | hist) . . (+1,375) . . Phylogenetics: SMap lab (→Making sMap easier to invoke)
- 02:46, 8 April 2020 (diff | hist) . . (+361) . . Phylogenetics: SMap lab (→Tour of the output files)
- 02:25, 8 April 2020 (diff | hist) . . (+590) . . Phylogenetics: SMap lab (→Tour of the output files)
- 02:06, 8 April 2020 (diff | hist) . . (-1) . . Phylogenetics: SMap lab (→Minimal Example)
- 02:06, 8 April 2020 (diff | hist) . . (-4) . . Phylogenetics: SMap lab (→Minimal Example)
- 02:05, 8 April 2020 (diff | hist) . . (+2,051) . . Phylogenetics: SMap lab (→Tour of the output files)
- 01:16, 8 April 2020 (diff | hist) . . (+52) . . Phylogenetics: SMap lab (→Tour of the output files)
- 01:15, 8 April 2020 (diff | hist) . . (+12) . . Phylogenetics: SMap lab (→Minimal Example)
- 01:04, 8 April 2020 (diff | hist) . . (+1,966) . . Phylogenetics: SMap lab (→Making sMap easier to invoke)
- 19:22, 7 April 2020 (diff | hist) . . (+133) . . Phylogenetics: SMap lab (→ML analysis of the self-incompatibility trait)
- 19:19, 7 April 2020 (diff | hist) . . (+45) . . Phylogenetics: SMap lab (→ML analyses)
- 13:23, 7 April 2020 (diff | hist) . . (+146) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 13:20, 7 April 2020 (diff | hist) . . (+65) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 13:14, 7 April 2020 (diff | hist) . . (+2) . . Phylogenetics: SMap lab (→ML analysis of the self-incompatibility trait)
- 02:20, 7 April 2020 (diff | hist) . . (+320) . . Phylogenetics: SMap lab
- 02:16, 7 April 2020 (diff | hist) . . (+62) . . Phylogenetics: SMap lab (→ML analysis of the self-incompatibility trait)
- 02:14, 7 April 2020 (diff | hist) . . (-900) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 00:13, 7 April 2020 (diff | hist) . . (+166) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 00:10, 7 April 2020 (diff | hist) . . (+168) . . Phylogenetics: SMap lab (→ML analysis of the flower morphology trait)
- 00:08, 7 April 2020 (diff | hist) . . (+2,016) . . Phylogenetics: SMap lab (→ML analyses)
- 20:45, 6 April 2020 (diff | hist) . . (-2) . . Phylogenetics: SMap lab (→Downloading the data for the tutorial)
- 20:44, 6 April 2020 (diff | hist) . . (+448) . . Phylogenetics: SMap lab (→Download sMap)
- 20:40, 6 April 2020 (diff | hist) . . (+274) . . Phylogenetics: SMap lab (→Download sMap)
- 20:36, 6 April 2020 (diff | hist) . . (+445) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 17:34, 6 April 2020 (diff | hist) . . (0) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 17:34, 6 April 2020 (diff | hist) . . (+516) . . Phylogenetics: SMap lab (→Download sMap)
- 17:28, 6 April 2020 (diff | hist) . . (+8) . . Phylogenetics: SMap lab (→Stochastic mapping for the self-incompatibility trait)
- 17:27, 6 April 2020 (diff | hist) . . (+839) . . Phylogenetics: SMap lab
- 17:12, 6 April 2020 (diff | hist) . . (0) . . Phylogenetics: SMap lab
- 17:12, 6 April 2020 (diff | hist) . . (+463) . . Phylogenetics: SMap lab (→Mating system trait)
- 16:57, 6 April 2020 (diff | hist) . . (+4) . . Phylogenetics: SMap lab (→Self-compatibility trait)
- 16:56, 6 April 2020 (diff | hist) . . (+2,691) . . Phylogenetics: SMap lab (→Downloading the data for the tutorial)
- 16:15, 6 April 2020 (diff | hist) . . (+401) . . Phylogenetics: SMap lab
- 15:46, 4 April 2020 (diff | hist) . . (+2,007) . . N Phylogenetics: SMap lab (Created page with "{| border="0" |- |rowspan="2" valign="top"|150px |<span style="font-size: x-large">[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Phylogenetics:_S...")
- 15:44, 30 March 2020 (diff | hist) . . (+29) . . Phylogenetics: Simulating sequence data (current)
- 15:20, 30 March 2020 (diff | hist) . . (+262) . . Phylogenetics: BayesTraits Lab (→Estimating ancestral states) (current)
- 15:17, 30 March 2020 (diff | hist) . . (+603) . . Phylogenetics: BayesTraits Lab (→Challenge)
- 14:47, 30 March 2020 (diff | hist) . . (+42) . . Phylogenetics: BayesTraits Lab (→Challenge)
- 14:46, 30 March 2020 (diff | hist) . . (+856) . . Phylogenetics: BayesTraits Lab (→Estimating ancestral states)
- 14:23, 30 March 2020 (diff | hist) . . (+6) . . Phylogenetics: BayesTraits Lab (→Estimating ancestral states)
- 14:19, 30 March 2020 (diff | hist) . . (+268) . . Phylogenetics: BayesTraits Lab (→Bayesian Reversible-jump MCMC)
- 14:11, 30 March 2020 (diff | hist) . . (+44) . . Phylogenetics: BayesTraits Lab (→Estimating ancestral states)
- 14:04, 30 March 2020 (diff | hist) . . (+18) . . Phylogenetics: BayesTraits Lab (→Bayesian Reversible-jump MCMC)
- 13:44, 30 March 2020 (diff | hist) . . (+356) . . Phylogenetics: BayesTraits Lab (→Bayesian MCMC: Dependence model)
- 13:34, 30 March 2020 (diff | hist) . . (+260) . . Phylogenetics: BayesTraits Lab (→Bayesian MCMC: Dependence model)
- 13:24, 30 March 2020 (diff | hist) . . (0) . . Phylogenetics: BayesTraits Lab (→Maximum Likelihood: Dependence model)
- 13:24, 30 March 2020 (diff | hist) . . (0) . . Phylogenetics: BayesTraits Lab (→Maximum Likelihood: Dependence model)
- 13:22, 30 March 2020 (diff | hist) . . (0) . . Phylogenetics: BayesTraits Lab (→Maximum Likelihood: Independence model)
- 13:22, 30 March 2020 (diff | hist) . . (+41) . . Phylogenetics: BayesTraits Lab (→Maximum Likelihood: Independence model)
- 13:21, 30 March 2020 (diff | hist) . . (-36) . . Phylogenetics: BayesTraits Lab (→Maximum Likelihood: Independence model)
- 13:18, 30 March 2020 (diff | hist) . . (-6) . . Phylogenetics: BayesTraits Lab (→Download BayesTraits)
- 13:17, 30 March 2020 (diff | hist) . . (+2) . . Phylogenetics: BayesTraits Lab (→Download BayesTraits)
- 13:16, 30 March 2020 (diff | hist) . . (-24) . . Phylogenetics: BayesTraits Lab (→Download the tree and data files)
- 13:15, 30 March 2020 (diff | hist) . . (+212) . . Phylogenetics: BayesTraits Lab (→Download the tree and data files)
- 13:13, 30 March 2020 (diff | hist) . . (+1) . . Phylogenetics: BayesTraits Lab (→Download BayesTraits)
- 13:13, 30 March 2020 (diff | hist) . . (-196) . . Phylogenetics: BayesTraits Lab (→Maximum Likelihood: Independence model)
- 12:45, 30 March 2020 (diff | hist) . . (+31) . . Phylogenetics: BayesTraits Lab (→Download the tree and data files)
- 12:44, 30 March 2020 (diff | hist) . . (+25) . . Phylogenetics: BayesTraits Lab (→Download the tree and data files)
- 12:40, 30 March 2020 (diff | hist) . . (-36) . . Phylogenetics: BayesTraits Lab (→Download BayesTraits)
- 12:39, 30 March 2020 (diff | hist) . . (+1,497) . . Phylogenetics: BayesTraits Lab
- 17:21, 27 March 2020 (diff | hist) . . (+3) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Estimating the marginal likelihood using the stepping-stone method) (current)
- 16:03, 27 March 2020 (diff | hist) . . (+27) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Challenge)
- 22:49, 20 March 2020 (diff | hist) . . (+13) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Challenge)
- 22:22, 20 March 2020 (diff | hist) . . (-4) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Interpreting the results)
- 21:19, 20 March 2020 (diff | hist) . . (-18) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Estimating the marginal likelihood using the stepping-stone method)
- 20:40, 20 March 2020 (diff | hist) . . (+48) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Estimating the marginal likelihood using the stepping-stone method)
- 20:35, 20 March 2020 (diff | hist) . . (+36) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Analyzing the output)
- 20:18, 20 March 2020 (diff | hist) . . (+41) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Create a slurm submit script)
- 19:43, 20 March 2020 (diff | hist) . . (0) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Analyzing the output)
- 19:41, 20 March 2020 (diff | hist) . . (+27) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Create a slurm submit script)
- 19:41, 20 March 2020 (diff | hist) . . (-74) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Login to Xanadu)
- 19:03, 20 March 2020 (diff | hist) . . (+53) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Login to Xanadu)
- 19:00, 20 March 2020 (diff | hist) . . (-1) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Create a slurm submit script)
- 18:59, 20 March 2020 (diff | hist) . . (-50) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Create a slurm submit script)
- 18:59, 20 March 2020 (diff | hist) . . (+13) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Finishing the MrBayes block)
- 18:57, 20 March 2020 (diff | hist) . . (+592) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Specifying branch length and gamma shape priors)
- 18:09, 20 March 2020 (diff | hist) . . (-145) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Creating a command file)
- 18:08, 20 March 2020 (diff | hist) . . (+13) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Creating a command file)
- 18:07, 20 March 2020 (diff | hist) . . (+709) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Creating a command file)
- 18:03, 20 March 2020 (diff | hist) . . (-25) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Creating a command file)
- 18:01, 20 March 2020 (diff | hist) . . (+144) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Downloading the data file)
- 17:59, 20 March 2020 (diff | hist) . . (-326) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Running MrBayes on Xanadu)
- 17:55, 20 March 2020 (diff | hist) . . (+160) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Downloading the data file)
- 17:53, 20 March 2020 (diff | hist) . . (+138) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Running MrBayes on the cluster)
- 14:30, 20 March 2020 (diff | hist) . . (-8) . . Phylogenetics: Morphology and Partitioning in MrBayes (→The Nylander et al. study)
- 01:34, 9 March 2020 (diff | hist) . . (-146) . . Phylogenetics: MrBayes Lab (→Using Tracer to summarize MCMC results) (current)
- 01:18, 9 March 2020 (diff | hist) . . (+48) . . Phylogenetics: MrBayes Lab (→Running MrBayes and interpreting the results)
- 01:10, 9 March 2020 (diff | hist) . . (+47) . . Phylogenetics: MrBayes Lab (→Running MrBayes and interpreting the results)
- 01:10, 9 March 2020 (diff | hist) . . (+85) . . Phylogenetics: MrBayes Lab (→Running MrBayes and interpreting the results)
- 01:08, 9 March 2020 (diff | hist) . . (+97) . . Phylogenetics: MrBayes Lab (→Running MrBayes and interpreting the results)
- 01:04, 9 March 2020 (diff | hist) . . (+13) . . Phylogenetics: MrBayes Lab (→Specifying a prior on base frequencies)
- 01:01, 9 March 2020 (diff | hist) . . (+2) . . Phylogenetics: MrBayes Lab (→Specifying the prior on kappa)
- 00:53, 9 March 2020 (diff | hist) . . (-119) . . Phylogenetics: MrBayes Lab (→Creating a MRBAYES block)
- 00:49, 9 March 2020 (diff | hist) . . (-11) . . Phylogenetics: MrBayes Lab (→Download and save the data file)
- 00:48, 9 March 2020 (diff | hist) . . (-212) . . Phylogenetics: MrBayes Lab (→(q)login to the cluster)
- 16:09, 2 March 2020 (diff | hist) . . (-96) . . Phylogenetics: R Primer (→Starting R)
- 16:07, 2 March 2020 (diff | hist) . . (+349) . . Phylogenetics: R Primer (→Getting Help)
- 16:04, 2 March 2020 (diff | hist) . . (-475) . . Phylogenetics: R Primer (→Goals)
- 16:02, 2 March 2020 (diff | hist) . . (-663) . . Phylogenetics: R Primer (→Challenge!)
- 16:02, 2 March 2020 (diff | hist) . . (-1,223) . . Phylogenetics: R Primer (→Running ggtree on your Computer)
- 16:01, 2 March 2020 (diff | hist) . . (0) . . Phylogenetics: R Primer (→Cite ggtree)
- 16:00, 2 March 2020 (diff | hist) . . (+939) . . Phylogenetics: R Primer (→Plotting trees in R)
- 14:37, 2 March 2020 (diff | hist) . . (+220) . . Phylogenetics: R Primer (→Clade Labels)
- 14:35, 2 March 2020 (diff | hist) . . (-10) . . Phylogenetics: R Primer (→Clade Labels)
- 14:35, 2 March 2020 (diff | hist) . . (+1) . . Phylogenetics: R Primer (→Clade Colors)
- 14:35, 2 March 2020 (diff | hist) . . (-9) . . Phylogenetics: R Primer (→Clade Colors)
- 14:34, 2 March 2020 (diff | hist) . . (-1) . . Phylogenetics: R Primer (→Clade Labels)
- 14:34, 2 March 2020 (diff | hist) . . (-128) . . Phylogenetics: R Primer (→Clade Labels)
- 14:32, 2 March 2020 (diff | hist) . . (+15) . . Phylogenetics: R Primer (→Clade Labels)
- 14:29, 2 March 2020 (diff | hist) . . (+3) . . Phylogenetics: R Primer (→Clade Colors)
- 14:28, 2 March 2020 (diff | hist) . . (-6) . . Phylogenetics: R Primer (→Clade Colors)
- 14:27, 2 March 2020 (diff | hist) . . (+131) . . Phylogenetics: R Primer (→Clade Colors)
- 14:22, 2 March 2020 (diff | hist) . . (+394) . . Phylogenetics: R Primer (→Saving to a PDF)
- 14:18, 2 March 2020 (diff | hist) . . (+1,809) . . Phylogenetics: R Primer (→Tip Labels)
- 14:00, 2 March 2020 (diff | hist) . . (+9) . . Phylogenetics: R Primer (→Plotting the tree)
- 13:58, 2 March 2020 (diff | hist) . . (+152) . . Phylogenetics: R Primer (→Reading and storing a tree)
- 13:55, 2 March 2020 (diff | hist) . . (+8) . . Phylogenetics: R Primer (→Install ggtree)
- 13:01, 2 March 2020 (diff | hist) . . (+435) . . Phylogenetics: R Primer (→Plotting trees in R)
- 01:19, 2 March 2020 (diff | hist) . . (+32) . . Phylogenetics: R Primer (→Node Labels)
- 01:17, 2 March 2020 (diff | hist) . . (-183) . . Phylogenetics: R Primer (→Node Labels)
- 23:50, 1 March 2020 (diff | hist) . . (+7) . . Phylogenetics: R Primer (→Clade Labels)
- 23:49, 1 March 2020 (diff | hist) . . (-817) . . Phylogenetics: R Primer (→Clade Labels)
- 23:18, 1 March 2020 (diff | hist) . . (+110) . . Phylogenetics: R Primer (→Clade Colors)
- 22:36, 1 March 2020 (diff | hist) . . (-86) . . Phylogenetics: R Primer (→Tip Labels)
- 22:13, 1 March 2020 (diff | hist) . . (0) . . Phylogenetics: R Primer (→Clade Labels)
- 21:45, 1 March 2020 (diff | hist) . . (+16,309) . . Phylogenetics: R Primer
- 21:05, 1 March 2020 (diff | hist) . . (0) . . Phylogenetics: R Primer (→Another way to view Dirichlet samples)
- 21:05, 1 March 2020 (diff | hist) . . (+275) . . Phylogenetics: R Primer (→Asymmetrical Dirichlet distributions)
- 20:24, 1 March 2020 (diff | hist) . . (+114) . . Phylogenetics: R Primer (→Dirichlet distribution)
- 20:14, 1 March 2020 (diff | hist) . . (+206) . . Phylogenetics: R Primer (→Relationship to the Gamma distribution)
- 20:07, 1 March 2020 (diff | hist) . . (+8) . . Phylogenetics: R Primer (→Relationship to the Gamma distribution)
- 20:05, 1 March 2020 (diff | hist) . . (-3) . . Phylogenetics: R Primer (→Relationship to the Gamma distribution)
- 19:48, 1 March 2020 (diff | hist) . . (-91) . . Phylogenetics: R Primer (→Relationship to the Gamma distribution)
- 19:47, 1 March 2020 (diff | hist) . . (-1) . . Phylogenetics: R Primer (→Asymmetrical Beta distributions)
- 19:46, 1 March 2020 (diff | hist) . . (-15) . . Phylogenetics: R Primer (→Beta distribution)
- 19:33, 1 March 2020 (diff | hist) . . (+7) . . Phylogenetics: R Primer (→Exponential distribution)
- 19:12, 1 March 2020 (diff | hist) . . (+156) . . Phylogenetics: R Primer (→Gamma distribution)
- 18:56, 1 March 2020 (diff | hist) . . (+194) . . Phylogenetics: R Primer (→Gamma distribution)
- 18:37, 1 March 2020 (diff | hist) . . (+8) . . Phylogenetics: R Primer (→Gamma distribution)
- 18:36, 1 March 2020 (diff | hist) . . (+123) . . Phylogenetics: R Primer (→Data frames)
- 18:27, 1 March 2020 (diff | hist) . . (-447) . . Phylogenetics: R Primer (→Creating a plot)
- 18:09, 1 March 2020 (diff | hist) . . (+140) . . Phylogenetics: R Primer (→Creating a histogram)
- 18:07, 1 March 2020 (diff | hist) . . (-3) . . Phylogenetics: R Primer (→Installing R)
- 18:06, 1 March 2020 (diff | hist) . . (+192) . . Phylogenetics: R Primer (→Installing R)
- 18:00, 1 March 2020 (diff | hist) . . (-45) . . Phylogenetics: R Primer (→Creating plots using R)
- 17:59, 1 March 2020 (diff | hist) . . (-25) . . Phylogenetics: R Primer (→Installing RStudio)
- 17:57, 1 March 2020 (diff | hist) . . (+41) . . Phylogenetics: R Primer (→Sarting R)
- 17:56, 1 March 2020 (diff | hist) . . (+42) . . Phylogenetics: R Primer (→Installing RStudio)
- 17:56, 1 March 2020 (diff | hist) . . (+293) . . Phylogenetics: R Primer (→Installing R)
- 17:42, 1 March 2020 (diff | hist) . . (+298) . . Phylogenetics: R Primer
- 12:02, 26 February 2020 (diff | hist) . . (-1) . . m Phylogenetics: HyPhy Lab (→Create a tree representing the null hypothesis) (current)
- 23:06, 25 February 2020 (diff | hist) . . (+14) . . Phylogenetics: HyPhy Lab (→Constructing the likelihood function)
- 23:01, 25 February 2020 (diff | hist) . . (+314) . . Phylogenetics: HyPhy Lab (→RELAX)
- 22:19, 25 February 2020 (diff | hist) . . (+1,068) . . Phylogenetics: HyPhy Lab (→RELAX)
- 21:59, 25 February 2020 (diff | hist) . . (+482) . . Phylogenetics: HyPhy Lab (→RELAX)
- 21:53, 25 February 2020 (diff | hist) . . (+237) . . Phylogenetics: HyPhy Lab (→RELAX)
- 20:29, 25 February 2020 (diff | hist) . . (-4) . . Phylogenetics: HyPhy Lab (→Part 1)
- 18:58, 25 February 2020 (diff | hist) . . (+1,371) . . Phylogenetics: HyPhy Lab
- 18:44, 25 February 2020 (diff | hist) . . (+1,502) . . Phylogenetics: HyPhy Lab (→Goal)
- 20:54, 24 February 2020 (diff | hist) . . (-6) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 20:41, 24 February 2020 (diff | hist) . . (+1) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 20:40, 24 February 2020 (diff | hist) . . (+24) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 20:31, 24 February 2020 (diff | hist) . . (+535) . . Phylogenetics: HyPhy Lab (→Final exercise)
- 20:25, 24 February 2020 (diff | hist) . . (+4,093) . . Phylogenetics: HyPhy Lab (→Ready to simulate!)
- 19:56, 24 February 2020 (diff | hist) . . (+1) . . Phylogenetics: HyPhy Lab (→Ready to simulate!)
- 19:56, 24 February 2020 (diff | hist) . . (+2,995) . . Phylogenetics: HyPhy Lab (→Fixing up edge lengths)
- 19:35, 24 February 2020 (diff | hist) . . (-685) . . Phylogenetics: HyPhy Lab (→Fixing up edge lengths)
- 19:23, 24 February 2020 (diff | hist) . . (+1,616) . . Phylogenetics: HyPhy Lab (→Fixing up edge lengths)
- 19:11, 24 February 2020 (diff | hist) . . (+10) . . Phylogenetics: HyPhy Lab (→Define the HKY85 rate matrix)
- 19:11, 24 February 2020 (diff | hist) . . (+13) . . Phylogenetics: HyPhy Lab (→Define the HKY85 rate matrix)
- 19:09, 24 February 2020 (diff | hist) . . (+1,499) . . Phylogenetics: HyPhy Lab (→Don't get too comfortable just yet)
- 18:53, 24 February 2020 (diff | hist) . . (-2) . . Phylogenetics: HyPhy Lab (→Don't get too comfortable just yet)
- 18:52, 24 February 2020 (diff | hist) . . (+1,355) . . Phylogenetics: HyPhy Lab (→Don't get too comfortable just yet)
- 18:35, 24 February 2020 (diff | hist) . . (+738) . . Phylogenetics: HyPhy Lab (→Creating the second model)
- 18:30, 24 February 2020 (diff | hist) . . (+1,774) . . Phylogenetics: HyPhy Lab (→Create a tree representing the null hypothesis)
- 18:17, 24 February 2020 (diff | hist) . . (+16) . . Phylogenetics: HyPhy Lab
- 18:16, 24 February 2020 (diff | hist) . . (+2,775) . . Phylogenetics: HyPhy Lab
- 17:38, 24 February 2020 (diff | hist) . . (+624) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 17:32, 24 February 2020 (diff | hist) . . (+8) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 17:25, 24 February 2020 (diff | hist) . . (+26) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 17:18, 24 February 2020 (diff | hist) . . (+65) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 15:26, 24 February 2020 (diff | hist) . . (+1,797) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 14:50, 24 February 2020 (diff | hist) . . (+323) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 14:48, 24 February 2020 (diff | hist) . . (-17,448) . . Phylogenetics: HyPhy Lab
- 14:24, 24 February 2020 (diff | hist) . . (+27) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 14:19, 24 February 2020 (diff | hist) . . (+2) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 14:19, 24 February 2020 (diff | hist) . . (+9) . . Phylogenetics: HyPhy Lab (→HyPhy)
- 14:18, 24 February 2020 (diff | hist) . . (-19) . . Phylogenetics: HyPhy Lab (→Login to Xanadu)
- 03:03, 24 February 2020 (diff | hist) . . (+88) . . Phylogenetics: HyPhy Lab
- 15:38, 17 February 2020 (diff | hist) . . (+165) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 14:56, 17 February 2020 (diff | hist) . . (-44) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 14:37, 17 February 2020 (diff | hist) . . (-15) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 14:33, 17 February 2020 (diff | hist) . . (+258) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 14:26, 17 February 2020 (diff | hist) . . (+92) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:46, 17 February 2020 (diff | hist) . . (+16) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:42, 17 February 2020 (diff | hist) . . (-2) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:41, 17 February 2020 (diff | hist) . . (+6) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:24, 17 February 2020 (diff | hist) . . (-70) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:23, 17 February 2020 (diff | hist) . . (+239) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 02:20, 17 February 2020 (diff | hist) . . (-103) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:19, 17 February 2020 (diff | hist) . . (+61) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 02:13, 17 February 2020 (diff | hist) . . (-96) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:09, 17 February 2020 (diff | hist) . . (-35) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:07, 17 February 2020 (diff | hist) . . (-188) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 01:56, 17 February 2020 (diff | hist) . . (-115) . . Phylogenetics: Simulating sequence data (→Enter the Felsenstein Zone)
- 01:56, 17 February 2020 (diff | hist) . . (-27) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 01:36, 17 February 2020 (diff | hist) . . (+308) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 01:29, 17 February 2020 (diff | hist) . . (+52) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 01:19, 17 February 2020 (diff | hist) . . (+80) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 13:12, 10 February 2020 (diff | hist) . . (+3,352) . . Phylogenetics: Using IQ-TREE for multilocus likelihood analyses (→Getting started) (current)
- 12:40, 10 February 2020 (diff | hist) . . (+1,257) . . N Phylogenetics: Using IQ-TREE for multilocus likelihood analyses (Created page with "{| border="0" |- |rowspan="2" valign="top"|200px |<span style="font-size: x-large">[http://phylogeny.uconn.edu/courses/ EEB 5349: Phylogenetics]</span>...")
- 19:38, 3 February 2020 (diff | hist) . . (+63) . . Phylogenetics: Likelihood Lab (→Likelihood ratio tests) (current)
- 19:37, 3 February 2020 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→Determining significance)
- 19:32, 3 February 2020 (diff | hist) . . (-59) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:13, 3 February 2020 (diff | hist) . . (+388) . . Phylogenetics: Likelihood Lab (→What parameters make the fit of the model significantly better?)
- 19:08, 3 February 2020 (diff | hist) . . (+9) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:04, 3 February 2020 (diff | hist) . . (+306) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:03, 3 February 2020 (diff | hist) . . (+189) . . Phylogenetics: Likelihood Lab (→Estimate the heterogeneity in rates among sites)
- 18:59, 3 February 2020 (diff | hist) . . (+6) . . Phylogenetics: Likelihood Lab (→Estimate the proportion of invariable sites)
- 18:58, 3 February 2020 (diff | hist) . . (+302) . . Phylogenetics: Likelihood Lab (→Estimate the proportion of invariable sites)
- 18:53, 3 February 2020 (diff | hist) . . (+287) . . Phylogenetics: Likelihood Lab (→Estimate transition/transversion bias)
- 18:48, 3 February 2020 (diff | hist) . . (+250) . . Phylogenetics: Likelihood Lab (→Estimate base frequencies)
- 18:45, 3 February 2020 (diff | hist) . . (+190) . . Phylogenetics: Likelihood Lab (→Obtain the maximum likelihood tree under the F81 model)
- 18:19, 3 February 2020 (diff | hist) . . (-135) . . Phylogenetics: Likelihood Lab
- 00:33, 3 February 2020 (diff | hist) . . (-116) . . Phylogenetics: Python Primer (current)
- 20:18, 28 January 2020 (diff | hist) . . (-60) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search) (current)
- 19:49, 28 January 2020 (diff | hist) . . (+33) . . Phylogenetics: Searching Lab (→Exercise to turn in before the end of lab)
- 19:48, 28 January 2020 (diff | hist) . . (-1) . . Phylogenetics: Searching Lab (→Exercise to turn in before the end of lab)
- 19:48, 28 January 2020 (diff | hist) . . (+137) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:56, 28 January 2020 (diff | hist) . . (+119) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:47, 28 January 2020 (diff | hist) . . (+26) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:31, 28 January 2020 (diff | hist) . . (+579) . . Phylogenetics: Searching Lab
- 17:56, 28 January 2020 (diff | hist) . . (+45) . . Phylogenetics: Searching Lab
- 23:03, 16 January 2020 (diff | hist) . . (-131) . . Phylogenetics: Introduction to PAUP* (current)
- 19:56, 16 January 2020 (diff | hist) . . (+293) . . Phylogenetics: Xanadu Cluster (→Man pages)
- 19:53, 16 January 2020 (diff | hist) . . (+87) . . Phylogenetics: Xanadu Cluster (→Delete junk.txt using the rm command)
- 19:51, 16 January 2020 (diff | hist) . . (+13) . . Phylogenetics: Xanadu Cluster (→Why both junk.txt and algae.output.txt?)
- 19:51, 16 January 2020 (diff | hist) . . (-28) . . Phylogenetics: Xanadu Cluster (→Why both junk.txt and algae.output.txt?)
- 19:48, 16 January 2020 (diff | hist) . . (+230) . . Phylogenetics: Xanadu Cluster (→Starting a PAUP* analysis)
- 19:25, 16 January 2020 (diff | hist) . . (-1) . . Phylogenetics: Xanadu Cluster (→A few more UNIX commands)
- 19:21, 16 January 2020 (diff | hist) . . (-33) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:20, 16 January 2020 (diff | hist) . . (+373) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:12, 16 January 2020 (diff | hist) . . (+208) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:10, 16 January 2020 (diff | hist) . . (-29) . . Phylogenetics: Xanadu Cluster (→Using scp to upload the algae.nex data file)
- 19:09, 16 January 2020 (diff | hist) . . (0) . . Phylogenetics: Xanadu Cluster (→Using Cyberduck to upload the algae.nex data file)
- 19:08, 16 January 2020 (diff | hist) . . (0) . . N File:Cyberduck-bookmark-xanadu.png (current)
- 18:36, 16 January 2020 (diff | hist) . . (+13) . . Phylogenetics: Xanadu Cluster (→Create the gopaup file)
- 18:36, 16 January 2020 (diff | hist) . . (+85) . . Phylogenetics: Xanadu Cluster (→Create the gopaup file)
- 17:44, 16 January 2020 (diff | hist) . . (+1) . . Phylogenetics: Xanadu Cluster (→rm command: cleaning up)
- 17:44, 16 January 2020 (diff | hist) . . (-63) . . Phylogenetics: Xanadu Cluster (→rm command: cleaning up)
- 17:36, 16 January 2020 (diff | hist) . . (+20) . . Phylogenetics: Xanadu Cluster (→Using Cyberduck to upload the algae.nex data file)
- 17:30, 16 January 2020 (diff | hist) . . (-23) . . Phylogenetics: Xanadu Cluster
- 17:03, 16 January 2020 (diff | hist) . . (+70) . . Phylogenetics: Xanadu Cluster (→If you use MacOS 10.x...)
- 17:02, 16 January 2020 (diff | hist) . . (+837) . . Phylogenetics: Xanadu Cluster
- 03:33, 16 January 2020 (diff | hist) . . (-83) . . Phylogenetics: Xanadu Cluster
- 04:01, 15 January 2020 (diff | hist) . . (+24,066) . . N Phylogenetics: Xanadu Cluster (Created page with "{| border="0" |- |rowspan="2" valign="top"|150px |<span style="font-size: x-large">[http://phylogeny.uconn.edu/courses/ EEB 5349: Phylogenetics]</span>...")
- 01:47, 24 August 2019 (diff | hist) . . (+9,394) . . N EEB 3895 Medical Parasitology Fall 2019 (Created page with "right == EEB 3895 Medical Parasitology Fall 2019== <span style="font-size: medium"><font color="#C70039"> '''Course description'''</font color="#...")
- 14:14, 7 March 2019 (diff | hist) . . (-28) . . Molecular systematics Spring 2018 (current)
- 15:38, 25 February 2019 (diff | hist) . . (-19) . . Seminar speaker sign-up (→Friday, March 1, 2019)
- 15:38, 25 February 2019 (diff | hist) . . (+37) . . Seminar speaker sign-up (→Thursday, February 28, 2019)
- 14:37, 25 February 2019 (diff | hist) . . (-4) . . Seminar speaker sign-up (→Friday, February 29, 2019)
- 14:35, 25 February 2019 (diff | hist) . . (+19) . . Seminar speaker sign-up (→Friday, February 29, 2019)
- 14:31, 24 September 2018 (diff | hist) . . (-2) . . Systematics Seminar (→Theme and Schedule for Spring 2018)
- 20:15, 7 September 2018 (diff | hist) . . (-665) . . Seminar speaker sign-up
- 19:16, 4 September 2018 (diff | hist) . . (0) . . Seminar speaker sign-up (→Wednesday, September 6th, 2018)
- 11:17, 1 May 2018 (diff | hist) . . (+18) . . Seminar speaker sign-up (→Friday, May 4th, 2018)
- 22:45, 25 April 2018 (diff | hist) . . (+101) . . Phylogenetics: BEAST2 Lab (→(q)login to the cluster)
- 22:45, 25 April 2018 (diff | hist) . . (+223) . . Phylogenetics: BEAST2 Lab (→Download BEAST2)
- 22:40, 25 April 2018 (diff | hist) . . (+14) . . Phylogenetics: BEAST2 Lab
- 22:38, 25 April 2018 (diff | hist) . . (+2,325) . . Phylogenetics: BEAST2 Lab (→Marginal Likelihood Estimation)
- 22:15, 25 April 2018 (diff | hist) . . (+86) . . Phylogenetics: BEAST2 Lab (→Run options)
- 17:33, 25 April 2018 (diff | hist) . . (+18) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:32, 25 April 2018 (diff | hist) . . (+1) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:32, 25 April 2018 (diff | hist) . . (0) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:30, 25 April 2018 (diff | hist) . . (+89) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:10, 25 April 2018 (diff | hist) . . (+124) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:01, 25 April 2018 (diff | hist) . . (+153) . . Phylogenetics: BEAST2 Lab (→Download BEAST2)
- 16:49, 25 April 2018 (diff | hist) . . (+8,066) . . N Phylogenetics: BEAST2 Lab (Created page with "{| border="0" |- |rowspan="2" valign="top"|150px |<span style="font-size: x-large">[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Phylogenetics:_S...")
- 17:11, 13 April 2018 (diff | hist) . . (+55) . . Ggtree (→Start R and Load Packages)
- 16:50, 13 April 2018 (diff | hist) . . (0) . . m Ggtree (→Tip Labels)
- 16:50, 13 April 2018 (diff | hist) . . (+94) . . Ggtree (→Get Situated on the Cluster)
- 18:35, 3 April 2018 (diff | hist) . . (+34) . . Phylogenetics: APE Lab (→Phylogenetic Generalized Least Squares (PGLS) regression)
- 18:34, 3 April 2018 (diff | hist) . . (-25) . . Phylogenetics: APE Lab (→Label interior nodes with the contrasts)
- 18:33, 3 April 2018 (diff | hist) . . (+25) . . Phylogenetics: APE Lab (→Label interior nodes with the contrasts)
- 18:00, 3 April 2018 (diff | hist) . . (-212) . . Phylogenetics: APE Lab (→Birth/death analysis)
- 17:58, 3 April 2018 (diff | hist) . . (+25) . . Phylogenetics: APE Lab (→Birth/death analysis)
- 17:54, 3 April 2018 (diff | hist) . . (+62) . . Phylogenetics: APE Lab
- 18:54, 30 March 2018 (diff | hist) . . (-29) . . Phylogenetics: BayesTraits Lab
- 18:53, 30 March 2018 (diff | hist) . . (-296) . . Phylogenetics: BayesTraits Lab
- 17:19, 23 March 2018 (diff | hist) . . (+19) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Estimating the marginal likelihood using the stepping-stone method)
- 17:01, 23 March 2018 (diff | hist) . . (+1) . . Phylogenetics: Morphology and Partitioning in MrBayes (→The prset command)
- 22:09, 20 March 2018 (diff | hist) . . (+18) . . Prospective Student Mark Stukel
- 13:51, 9 March 2018 (diff | hist) . . (0) . . Phylogenetics: MrBayes Lab (→Specifying the prior on kappa)
- 22:03, 7 March 2018 (diff | hist) . . (-17) . . Ggtree (→Getting Started)
- 22:02, 7 March 2018 (diff | hist) . . (+114) . . Ggtree (→Getting Started)
- 14:42, 7 March 2018 (diff | hist) . . (+39) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018) (current)
- 01:02, 7 March 2018 (diff | hist) . . (-2) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-213) . . Josh Justison Visit to Storrs (→Wednesday, March 7, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-16) . . Josh Justison Visit to Storrs (→Friday, March 9, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-16) . . Josh Justison Visit to Storrs (→Friday, March 9, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-16) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 00:55, 7 March 2018 (diff | hist) . . (-38) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 21:59, 6 March 2018 (diff | hist) . . (+24) . . Josh Justison Visit to Storrs (→Friday, March 9, 2018)
- 18:54, 6 March 2018 (diff | hist) . . (+8) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 15:04, 6 March 2018 (diff | hist) . . (+23) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 14:20, 6 March 2018 (diff | hist) . . (+3) . . Josh Justison Visit to Storrs (→Wednesday, March 7, 2018)
- 14:20, 6 March 2018 (diff | hist) . . (+6) . . Josh Justison Visit to Storrs (→Wednesday, March 7, 2018)
- 14:20, 6 March 2018 (diff | hist) . . (-63) . . Josh Justison Visit to Storrs (→Wednesday, March 7, 2018)
- 21:22, 5 March 2018 (diff | hist) . . (+1,307) . . N Josh Justison Visit to Storrs (Created page with " == '''Josh Justison''' == Josh is taking time out from his final semester at the University of Minnesota, where he is majoring in Biology and minoring in Computer Science, t...")
- 19:20, 2 March 2018 (diff | hist) . . (+7) . . Phylogenetics: R Primer
- 08:15, 23 February 2018 (diff | hist) . . (+1,708) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 07:15, 23 February 2018 (diff | hist) . . (+263) . . Phylogenetics: Simulating sequence data (→Enter the Felsenstein Zone)
- 07:12, 23 February 2018 (diff | hist) . . (+208) . . Phylogenetics: Simulating sequence data (→Have Some Fun)
- 06:59, 23 February 2018 (diff | hist) . . (+2) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 06:57, 23 February 2018 (diff | hist) . . (+78) . . Phylogenetics: Simulating sequence data (→Enter the Felsenstein Zone)
- 06:55, 23 February 2018 (diff | hist) . . (+229) . . Phylogenetics: Simulating sequence data (→Submitted for Your Approval: The Felsenstein Zone)
- 06:45, 23 February 2018 (diff | hist) . . (+27) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 06:40, 23 February 2018 (diff | hist) . . (-696) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 06:37, 23 February 2018 (diff | hist) . . (+327) . . Phylogenetics: Simulating sequence data (→Exploring the NEXUS File)
- 04:29, 23 February 2018 (diff | hist) . . (+90) . . Phylogenetics: Simulating sequence data
- 14:13, 22 February 2018 (diff | hist) . . (+432) . . Phylogenetics: Simulating sequence data (→Goals)
- 19:12, 16 February 2018 (diff | hist) . . (0) . . IQ-Tree (→Appendix 3)
- 19:10, 16 February 2018 (diff | hist) . . (+17) . . IQ-Tree
- 19:32, 9 February 2018 (diff | hist) . . (+113) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Challenge) (current)
- 19:29, 9 February 2018 (diff | hist) . . (-2) . . Phylogenetics: Large Scale Maximum Likelihood Analyses
- 19:22, 9 February 2018 (diff | hist) . . (+1,393) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Comparing GARLI and RAxML Using PAUP*)
- 19:46, 30 January 2018 (diff | hist) . . (+41) . . Phylogenetics: Likelihood Lab (→Determining significance)
- 19:45, 30 January 2018 (diff | hist) . . (+85) . . Phylogenetics: Likelihood Lab (→Determining significance)
- 19:42, 30 January 2018 (diff | hist) . . (0) . . N File:Chisq.png (current)
- 19:18, 30 January 2018 (diff | hist) . . (+9) . . Phylogenetics: Likelihood Lab (→A challenge)
- 19:40, 28 January 2018 (diff | hist) . . (+223) . . Phylogenetics: Likelihood Lab (→A challenge)
- 19:40, 28 January 2018 (diff | hist) . . (+42) . . Phylogenetics: Likelihood Lab (→Download the data file algae.nex)
- 19:36, 28 January 2018 (diff | hist) . . (+8) . . Phylogenetics: Likelihood Lab (→What parameters make the fit of the model significantly better?)
- 19:34, 28 January 2018 (diff | hist) . . (+297) . . Phylogenetics: Likelihood Lab (→What parameters make the fit of the model significantly better?)
- 19:31, 28 January 2018 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→What parameters make the fit of the model significantly better>)
- 19:31, 28 January 2018 (diff | hist) . . (+72) . . Phylogenetics: Likelihood Lab (→Determining significance)
- 19:30, 28 January 2018 (diff | hist) . . (+1,724) . . Phylogenetics: Likelihood Lab (→Likelihood ratio tests)
- 17:54, 28 January 2018 (diff | hist) . . (+32) . . Phylogenetics: Likelihood Lab (→Obtain the maximum likelihood tree under the F81 model)
- 17:48, 28 January 2018 (diff | hist) . . (+8) . . Phylogenetics: Likelihood Lab (→Obtain the maximum likelihood tree under the F81 model)
- 17:48, 28 January 2018 (diff | hist) . . (-10) . . Phylogenetics: Likelihood Lab (→Obtain the maximum likelihood tree under the F81 model)
- 17:47, 28 January 2018 (diff | hist) . . (+91) . . Phylogenetics: Likelihood Lab (→Obtain the maximum likelihood tree under the F81 model)
- 17:35, 28 January 2018 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→Trees block)
- 17:33, 28 January 2018 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→Data block)
- 17:31, 28 January 2018 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→Create a data file)
- 17:31, 28 January 2018 (diff | hist) . . (+172) . . Phylogenetics: Likelihood Lab (→Getting started)
- 17:29, 28 January 2018 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab
- 21:52, 26 January 2018 (diff | hist) . . (+183) . . Phylogenetics: Python Primer (→Install a text editor)
- 21:48, 26 January 2018 (diff | hist) . . (-5) . . Phylogenetics: Python Primer (→Install a text editor)
- 21:37, 26 January 2018 (diff | hist) . . (+67) . . Phylogenetics: Python Primer (→Lists and tuples)
- 21:33, 26 January 2018 (diff | hist) . . (-1) . . Phylogenetics: Python Primer (→Lists and tuples)
- 21:30, 26 January 2018 (diff | hist) . . (+175) . . Phylogenetics: Python Primer (→Installing Python)
- 19:14, 25 January 2018 (diff | hist) . . (+225) . . Phylogenetics: MrBayes Lab (→(q)login to the cluster)
- 17:15, 25 January 2018 (diff | hist) . . (+11,503) . . N Systematics Seminar Fall 2017 (Created page with "This is the home page of the UConn EEB department's Systematics Seminar (EEB 6486). This is a graduate seminar devoted to issues of interest to graduate students and faculty w...")
- 19:18, 23 January 2018 (diff | hist) . . (+169) . . Phylogenetics: Searching Lab (→Exhaustive parsimony search)
- 18:08, 23 January 2018 (diff | hist) . . (-110) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:08, 23 January 2018 (diff | hist) . . (-133) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
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