User contributions
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- 01:29, 17 February 2020 (diff | hist) . . (+52) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 01:19, 17 February 2020 (diff | hist) . . (+80) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 13:12, 10 February 2020 (diff | hist) . . (+3,352) . . Phylogenetics: Using IQ-TREE for multilocus likelihood analyses (→Getting started) (current)
- 12:40, 10 February 2020 (diff | hist) . . (+1,257) . . N Phylogenetics: Using IQ-TREE for multilocus likelihood analyses (Created page with "{| border="0" |- |rowspan="2" valign="top"|200px |<span style="font-size: x-large">[http://phylogeny.uconn.edu/courses/ EEB 5349: Phylogenetics]</span>...")
- 19:38, 3 February 2020 (diff | hist) . . (+63) . . Phylogenetics: Likelihood Lab (→Likelihood ratio tests) (current)
- 19:37, 3 February 2020 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→Determining significance)
- 19:32, 3 February 2020 (diff | hist) . . (-59) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:13, 3 February 2020 (diff | hist) . . (+388) . . Phylogenetics: Likelihood Lab (→What parameters make the fit of the model significantly better?)
- 19:08, 3 February 2020 (diff | hist) . . (+9) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:04, 3 February 2020 (diff | hist) . . (+306) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:03, 3 February 2020 (diff | hist) . . (+189) . . Phylogenetics: Likelihood Lab (→Estimate the heterogeneity in rates among sites)
- 18:59, 3 February 2020 (diff | hist) . . (+6) . . Phylogenetics: Likelihood Lab (→Estimate the proportion of invariable sites)
- 18:58, 3 February 2020 (diff | hist) . . (+302) . . Phylogenetics: Likelihood Lab (→Estimate the proportion of invariable sites)
- 18:53, 3 February 2020 (diff | hist) . . (+287) . . Phylogenetics: Likelihood Lab (→Estimate transition/transversion bias)
- 18:48, 3 February 2020 (diff | hist) . . (+250) . . Phylogenetics: Likelihood Lab (→Estimate base frequencies)
- 18:45, 3 February 2020 (diff | hist) . . (+190) . . Phylogenetics: Likelihood Lab (→Obtain the maximum likelihood tree under the F81 model)
- 18:19, 3 February 2020 (diff | hist) . . (-135) . . Phylogenetics: Likelihood Lab
- 00:33, 3 February 2020 (diff | hist) . . (-116) . . Phylogenetics: Python Primer (current)
- 20:18, 28 January 2020 (diff | hist) . . (-60) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search) (current)
- 19:49, 28 January 2020 (diff | hist) . . (+33) . . Phylogenetics: Searching Lab (→Exercise to turn in before the end of lab)
- 19:48, 28 January 2020 (diff | hist) . . (-1) . . Phylogenetics: Searching Lab (→Exercise to turn in before the end of lab)
- 19:48, 28 January 2020 (diff | hist) . . (+137) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:56, 28 January 2020 (diff | hist) . . (+119) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:47, 28 January 2020 (diff | hist) . . (+26) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:31, 28 January 2020 (diff | hist) . . (+579) . . Phylogenetics: Searching Lab
- 17:56, 28 January 2020 (diff | hist) . . (+45) . . Phylogenetics: Searching Lab
- 23:03, 16 January 2020 (diff | hist) . . (-131) . . Phylogenetics: Introduction to PAUP* (current)
- 19:56, 16 January 2020 (diff | hist) . . (+293) . . Phylogenetics: Xanadu Cluster (→Man pages)
- 19:53, 16 January 2020 (diff | hist) . . (+87) . . Phylogenetics: Xanadu Cluster (→Delete junk.txt using the rm command)
- 19:51, 16 January 2020 (diff | hist) . . (+13) . . Phylogenetics: Xanadu Cluster (→Why both junk.txt and algae.output.txt?)
- 19:51, 16 January 2020 (diff | hist) . . (-28) . . Phylogenetics: Xanadu Cluster (→Why both junk.txt and algae.output.txt?)
- 19:48, 16 January 2020 (diff | hist) . . (+230) . . Phylogenetics: Xanadu Cluster (→Starting a PAUP* analysis)
- 19:25, 16 January 2020 (diff | hist) . . (-1) . . Phylogenetics: Xanadu Cluster (→A few more UNIX commands)
- 19:21, 16 January 2020 (diff | hist) . . (-33) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:20, 16 January 2020 (diff | hist) . . (+373) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:12, 16 January 2020 (diff | hist) . . (+208) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:10, 16 January 2020 (diff | hist) . . (-29) . . Phylogenetics: Xanadu Cluster (→Using scp to upload the algae.nex data file)
- 19:09, 16 January 2020 (diff | hist) . . (0) . . Phylogenetics: Xanadu Cluster (→Using Cyberduck to upload the algae.nex data file)
- 19:08, 16 January 2020 (diff | hist) . . (0) . . N File:Cyberduck-bookmark-xanadu.png (current)
- 18:36, 16 January 2020 (diff | hist) . . (+13) . . Phylogenetics: Xanadu Cluster (→Create the gopaup file)
- 18:36, 16 January 2020 (diff | hist) . . (+85) . . Phylogenetics: Xanadu Cluster (→Create the gopaup file)
- 17:44, 16 January 2020 (diff | hist) . . (+1) . . Phylogenetics: Xanadu Cluster (→rm command: cleaning up)
- 17:44, 16 January 2020 (diff | hist) . . (-63) . . Phylogenetics: Xanadu Cluster (→rm command: cleaning up)
- 17:36, 16 January 2020 (diff | hist) . . (+20) . . Phylogenetics: Xanadu Cluster (→Using Cyberduck to upload the algae.nex data file)
- 17:30, 16 January 2020 (diff | hist) . . (-23) . . Phylogenetics: Xanadu Cluster
- 17:03, 16 January 2020 (diff | hist) . . (+70) . . Phylogenetics: Xanadu Cluster (→If you use MacOS 10.x...)
- 17:02, 16 January 2020 (diff | hist) . . (+837) . . Phylogenetics: Xanadu Cluster
- 03:33, 16 January 2020 (diff | hist) . . (-83) . . Phylogenetics: Xanadu Cluster
- 04:01, 15 January 2020 (diff | hist) . . (+24,066) . . N Phylogenetics: Xanadu Cluster (Created page with "{| border="0" |- |rowspan="2" valign="top"|150px |<span style="font-size: x-large">[http://phylogeny.uconn.edu/courses/ EEB 5349: Phylogenetics]</span>...")
- 01:47, 24 August 2019 (diff | hist) . . (+9,394) . . N EEB 3895 Medical Parasitology Fall 2019 (Created page with "right == EEB 3895 Medical Parasitology Fall 2019== <span style="font-size: medium"><font color="#C70039"> '''Course description'''</font color="#...")
- 14:14, 7 March 2019 (diff | hist) . . (-28) . . Molecular systematics Spring 2018 (current)
- 15:38, 25 February 2019 (diff | hist) . . (-19) . . Seminar speaker sign-up (→Friday, March 1, 2019)
- 15:38, 25 February 2019 (diff | hist) . . (+37) . . Seminar speaker sign-up (→Thursday, February 28, 2019)
- 14:37, 25 February 2019 (diff | hist) . . (-4) . . Seminar speaker sign-up (→Friday, February 29, 2019)
- 14:35, 25 February 2019 (diff | hist) . . (+19) . . Seminar speaker sign-up (→Friday, February 29, 2019)
- 14:31, 24 September 2018 (diff | hist) . . (-2) . . Systematics Seminar (→Theme and Schedule for Spring 2018)
- 20:15, 7 September 2018 (diff | hist) . . (-665) . . Seminar speaker sign-up
- 19:16, 4 September 2018 (diff | hist) . . (0) . . Seminar speaker sign-up (→Wednesday, September 6th, 2018)
- 11:17, 1 May 2018 (diff | hist) . . (+18) . . Seminar speaker sign-up (→Friday, May 4th, 2018)
- 22:45, 25 April 2018 (diff | hist) . . (+101) . . Phylogenetics: BEAST2 Lab (→(q)login to the cluster)
- 22:45, 25 April 2018 (diff | hist) . . (+223) . . Phylogenetics: BEAST2 Lab (→Download BEAST2)
- 22:40, 25 April 2018 (diff | hist) . . (+14) . . Phylogenetics: BEAST2 Lab
- 22:38, 25 April 2018 (diff | hist) . . (+2,325) . . Phylogenetics: BEAST2 Lab (→Marginal Likelihood Estimation)
- 22:15, 25 April 2018 (diff | hist) . . (+86) . . Phylogenetics: BEAST2 Lab (→Run options)
- 17:33, 25 April 2018 (diff | hist) . . (+18) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:32, 25 April 2018 (diff | hist) . . (+1) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:32, 25 April 2018 (diff | hist) . . (0) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:30, 25 April 2018 (diff | hist) . . (+89) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:10, 25 April 2018 (diff | hist) . . (+124) . . Phylogenetics: BEAST2 Lab (→Important: read before starting the tutorial)
- 17:01, 25 April 2018 (diff | hist) . . (+153) . . Phylogenetics: BEAST2 Lab (→Download BEAST2)
- 16:49, 25 April 2018 (diff | hist) . . (+8,066) . . N Phylogenetics: BEAST2 Lab (Created page with "{| border="0" |- |rowspan="2" valign="top"|150px |<span style="font-size: x-large">[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Phylogenetics:_S...")
- 17:11, 13 April 2018 (diff | hist) . . (+55) . . Ggtree (→Start R and Load Packages)
- 16:50, 13 April 2018 (diff | hist) . . (0) . . m Ggtree (→Tip Labels)
- 16:50, 13 April 2018 (diff | hist) . . (+94) . . Ggtree (→Get Situated on the Cluster)
- 18:35, 3 April 2018 (diff | hist) . . (+34) . . Phylogenetics: APE Lab (→Phylogenetic Generalized Least Squares (PGLS) regression)
- 18:34, 3 April 2018 (diff | hist) . . (-25) . . Phylogenetics: APE Lab (→Label interior nodes with the contrasts)
- 18:33, 3 April 2018 (diff | hist) . . (+25) . . Phylogenetics: APE Lab (→Label interior nodes with the contrasts)
- 18:00, 3 April 2018 (diff | hist) . . (-212) . . Phylogenetics: APE Lab (→Birth/death analysis)
- 17:58, 3 April 2018 (diff | hist) . . (+25) . . Phylogenetics: APE Lab (→Birth/death analysis)
- 17:54, 3 April 2018 (diff | hist) . . (+62) . . Phylogenetics: APE Lab
- 18:54, 30 March 2018 (diff | hist) . . (-29) . . Phylogenetics: BayesTraits Lab
- 18:53, 30 March 2018 (diff | hist) . . (-296) . . Phylogenetics: BayesTraits Lab
- 17:19, 23 March 2018 (diff | hist) . . (+19) . . Phylogenetics: Morphology and Partitioning in MrBayes (→Estimating the marginal likelihood using the stepping-stone method)
- 17:01, 23 March 2018 (diff | hist) . . (+1) . . Phylogenetics: Morphology and Partitioning in MrBayes (→The prset command)
- 22:09, 20 March 2018 (diff | hist) . . (+18) . . Prospective Student Mark Stukel
- 13:51, 9 March 2018 (diff | hist) . . (0) . . Phylogenetics: MrBayes Lab (→Specifying the prior on kappa)
- 22:03, 7 March 2018 (diff | hist) . . (-17) . . Ggtree (→Getting Started)
- 22:02, 7 March 2018 (diff | hist) . . (+114) . . Ggtree (→Getting Started)
- 14:42, 7 March 2018 (diff | hist) . . (+39) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018) (current)
- 01:02, 7 March 2018 (diff | hist) . . (-2) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-213) . . Josh Justison Visit to Storrs (→Wednesday, March 7, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-16) . . Josh Justison Visit to Storrs (→Friday, March 9, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-16) . . Josh Justison Visit to Storrs (→Friday, March 9, 2018)
- 00:56, 7 March 2018 (diff | hist) . . (-16) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 00:55, 7 March 2018 (diff | hist) . . (-38) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 21:59, 6 March 2018 (diff | hist) . . (+24) . . Josh Justison Visit to Storrs (→Friday, March 9, 2018)
- 18:54, 6 March 2018 (diff | hist) . . (+8) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 15:04, 6 March 2018 (diff | hist) . . (+23) . . Josh Justison Visit to Storrs (→Thursday, March 8, 2018)
- 14:20, 6 March 2018 (diff | hist) . . (+3) . . Josh Justison Visit to Storrs (→Wednesday, March 7, 2018)
- 14:20, 6 March 2018 (diff | hist) . . (+6) . . Josh Justison Visit to Storrs (→Wednesday, March 7, 2018)
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