• A Wish List for Systematic Biology – Michael J. Donoghue

• Exploring Data Interaction and Nucleotide Alignment in a Multiple Gene Analysis of I (Coleoptera: Scolytinae) – Anthony I. Cognato and Alfried P. Vogler.
  
  • Ips phenetic alignment
  • Ips poy g1
  • Ips poy g2
  • Ips poy g3
    
    
• Phylogeny of Trichoptera (Caddisflies): Characterization of Signal and Noise Within Multiple Datasets – Karl M. Kjer, Roger J. Blahnik, and Ralph W. Holzenthal.
  
  • Combined dataset
  • Trichoptera dataset
  • corrected Table 1
    
  • Explanation of Appendix 1
    
  • Appendix 2
    
  • COI TreeBase 1
    
  • EF1a TreeBase 1
    
  • RNA_Syst_Biol
    
  • Combined data TREEBASE 1
    
    
• Phylogeny of Saxifragales (Angiosperms, Eudicots): Analysis of a Rapid Ancient Radiation – Mark Fishbein, Carola Hibsch-Jetter, Douglas E. Soltis, and Larry Hufford.
  
  • Fishbein dataset
  • 26S dataset
  • 26S revised dataset
  • matK dataset
    
    
• Molecular Data Indicate the Protostome Affinity of Brachiopods – Renaud de Rosa.
  
  
• Combining and Comparing Morphometric Shape Descriptors with a Molecular Phylogeny: The Case of Fruit Type Evolution in Bornean Lithocarpus (Fagaceae) – Charles H. Cannon and Paul S. Manos.
  
  • Cannon and Manos dataset
    
    
• War and Peace in Phylogenetics: A Rejoinder on Total Evidence and Consensus – Claudine Levasseur and François-Joseph Lapointe.
  
  
• On Areas of Endemism, with an Example from the African Restionaceae – H. P. Linder.
  
  
• A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data – Paul O. Lewis.
  
  
• Unraveling the Evolutionary Radiation of the Families of the Zingiberales Using Morphological and Molecular Evidence – W. John Kress, Linda M. Prince, William J. Hahn, and Elizabeth A. Zimmer.
  
  • Kress et al. dataset
    
    
• Sequence Alignment of 18S Ribosomal RNA and the Basal Relationships of Adephagan Beetles: Evidence for Monophyly of Aquatic Families and the Placement of Trachypachidae – Verel L. Shull, Alfried P. Vogler, Michael D. Baker, David R. Maddison, and Peter M. Hammond.
  • Shull et al datasets
    

POINTS OF VIEW

• Complexity of the Likelihood Surface for a Large DNA Dataset – Laura A. Salter.
  
  • Salter dataset
    
    
• Difficulties in Detecting Hybridization – Mark T. Holder, Jennifer A. Anderson, and Alisha K. Holloway.