#nexus

BEGIN DATA;
DIMENSIONS  NTAX=39 NCHAR=145;
FORMAT DATATYPE=DNA  MISSING=N GAP=- MATCH=.;
MATRIX

cow             CCGCCGCTACCGCCTGCCTTCCAACGTGGACCAGTCCGCACTCTCCTGCTCCCTGTCCGCTGATGGCATGCTGACCTTCTCTGGCCCCAAGATCCCATCTGGCGTGGACGCCGGCCACAGCGAGCGGGCCATCCCCGTGTCCCGG 
flying_fox      NNNNNNNNNNNNNNNN..C.................G..G..G.................C..C.................C.........G..................................A..............G... 
round_eared_bat NNNNNNNNNNNNNNNN..C.................G..C.....T...........A..C..C...............................AG......C.....NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 
golden_hamster  ...T........T...........T...........T..C.................T..G..........................A...G...AG..C...T....T..T........T...A.......T..T.....A... 
Norway_rat      ...T........T...........T..............C............T....T..G..............................G...AG......T....T..T............A.......T........A... 
house_mouse     ...T........T...........T..............C.................T................................AG...AG..C..TT....T..T............A.......T..T.....A... 
mole_rat        ......A................GT...........T..C..T..............T..A.............................AG...A.......C....T..T........T..AA.......T..T.....T.A. 
tree_shrew      NNNNNNNNNNNNNNNN....................G..C.................A..A..C.................G.........G...AG..G...C.......T..............AC................A 
galago          NNNNNNNNNNNNNNNN....................G..C..G.........G.......A..C...........A...............G...AG..C...C....T.................A..............G... 
sifaka          NNNNNNNNNNNNNNNN..C.................G..GT.G.................G..C...........G.....C..............G......C......................A..............G... 
tarsier         NNNNNNNNNNNNNNNN..G.................G..C.....T..............C..................................AG..C...C......................A..............A... 
tamarin         NNNNNNNNNNNNNNNN..G.................G..C..G......A..........C..C...............A...............AGA.....C........AC....G.......A..............G... 
capuchin        NNNNNNNNNNNNNNNN..G.................G..C.....T.................C...............................AGA.....C.....A..AC....G.......A..............G... 
colobus         NNNNNNNNNNNNNNNN..G.................G..C.....T..............C..................................AGA.....C.A..T...AC....G---....A.....T......G.G... 
rhesus_monkey   NNNNNNNNNNNNNNNNNNN.................G..C.....T..............C..C...............................AGA.....C.A......AC...TG---....A.....T......G.G... 
chimpanzee      NNNNNNNNNNNNNNNN..G.................G..C.....T..............C...................G..............AGA.....C....T...AC....GC......A..............G... 
human           ..................G.................G..C.....T...........T..C...................G..............AGA.....C....T...AC....GC......A..............G... 
rabbit          ...G................................G..G..G........G..C.....G..C........C........C.........G.G.AG..C...C.......T..............A.................. 
Afr._elephant   NNNNNNNNNNNNNNNN..C.................T........T...........T..G..C................G..............AG......A....T...A.......T...A.A.................. 
2_toed_sloth    ..................CA.GGC...............G..G..............G..C..C.................G...........---------.......C..A.............CA................. 
3_toed_sloth    ..................CA.GGCT...........T.....G..............G..C..C.................G...........---------.......C..A.............CC................. 
tamandua        ..................CA.AGC...............G..G..............G..C..C.................G.........C.---------.......C..A.....G........A................. 
2_toed_anteater ..................CA.AGC............T..G..G..............G..C..C.................G.........C.---------.......C..A................................ 
11_b._armadillo ..................CA..GC...............G..GA........T....G..C..C............................C---------......TC..A..............C.......T......... 
9_b._armadillo  ..................GC..TCG...........G..G.................G..C..C.................G.........GC---------......GC........G........C................. 
red_kangaroo    T..T..A.....T.................T...G..T.CA.T..............T..........................T..........AC..CAA.A....T..AA.......T..T..AT.......T..A..T..T 
south._opossum  T.....A.................T.........G..T.CA.T..............T..........................T..........AC...AA.A....AT.AA.......T..T...T.......T..A..T..T 
hoatzin         ......G...........CG..............G.T..CA.CAG.............AGC..C.................G.........G....C..CAA.A..............GT....A..C......NNNNNNNNNNN 
groove_b._ani   ......G............G..............G.T..CA..A.............GAAC..C.................G.........G.T..C..CAA.A.....A..A.....GT....A.AC......NNNNNNNNNNN 
sooty_tern      ......G...........CG..............G.T..CA..A..............AAC..C..................C........G....CG.CAA.A........A...........A..C.T....NNNNNNNNNNN 
rock_pigeon     ......G...........CG..............G.T..CA..A..............AAC..C.................G.........G....CG.CAA.A........A.....G.....A..C........NNNNNNNNN 
blackbird       ..................CG..............G.T..CA..A..............AAC....................G.........G....C..CAA.A........A...........A..C......NNNNNNNNNNN 
mallard_duck    ......G...........CG................T..CA..A..........C....GC..C.................A.........G....C..CAA.A.....C..AC..........A..C........NNNNNNNNN 
silver_pheasant ......G...........CG....T...........T..CA..A....T...T.....AGC..C.................G.....A...G....T..CAATA.....C..A...........A..C......NNNNNNNNNNN 
domestic_fowl   ......G............G.T...........A.....CA..A....T.........AGC..C.................G.....A...G....C..CAATA.....C..A...........A..C................. 
tinamou         ......G...........C.................T..CA..A..........C...AG...C.................C.........G...AGG.CAA.A.....C..A...........A.AC.......TNNNNNNNNN 
slider_turtle   ....A.A..........................A..T..CA..A.............T.................T...........A..AG...AG..CAA.A.....A..A..T.T......A.AC....T..TNNNNNNNNN 
bullfrog        ...............C..C......C.......A...T.TA..AG......A..C..T...........TT........AGC..A..A..A..GATG..A...C.....T..A...........A..C.T.....T......A.A 
common_frog     ...............C..C......C.......A...T.TA..AG......A..C..T..C........T.........AGC..A..A..A..GATG..AAA.C...T.T..A...........A..C.......T......A.A 
;
END;
outgroup bullfrog common_frog;