#NEXUS
Begin data;
	Dimensions ntax=14 nchar=607;
	Format datatype=dna gap=- interleave;
	Matrix


Aeg_tau		TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CACT
Aust_pect	TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGCCGGCGATGA-CATC
Bromus[tec]	TCGTGACCCTGACCAAAACAAACCGCGCACGCGTTATCCAATCCGTCGACGATGGGCATC
Crith_del	TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGACGACGG-TTTA
Hen_pers	TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CATC
Psa_junc	TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGCCGGTGACGG-CACC
Pse_lib		TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGCGACGG-CACC
Pse_spic	TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGCGACGG-CACC
Sec_cer		TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CACC
Sec_mon		TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CACC
Tae_cm		TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCAAATCCGTCGGCGACGG-CACC
Thino_bes	TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGCGACGG-CACC
Thino_elon	TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGCGACGG-CATC
Trit_mon	TCGTGACCCTGACCAAAACAGACCGTGCACGCGTCATCCAATCCGTCGGCGATGG-CATT


Aeg_tau		GTCCGTCGCTCGGCCAAT--GCCTCGACCACCTCCCCTCCTCGGAGCGGGTGGTGGCTCG
Aust_pect	GTTCGTCGCTCGGCCAAG--TCCTCGACCACCTCCCCTCCTCGGAGCGGG----GGCTCG
Bromus[tec]	GTCCATTGCTCGGCCA----TCCTCGGTCACCTACACTTCTCGGAGTGGG---GTGCTCG
Crith_del	CACCGTCGCTCGGCCAA--TGCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG
Hen_pers	GTCCGTCGCTCGGCCAAT--GCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG
Psa_junc	GTCCGTCGCTCGGCCAAG--TCCTCGACCGCCTCCCCTCCTCGGAGTGGG----GGCTCG
Pse_lib		GTCCGTCGCTCGGCCAAG--TCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG
Pse_spic	GTCCGTCGCTCGGCCAAG--TCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG
Sec_cer		GTCCGTCGCTCGGCC--TATGCCTCGACCACCTCCCCTCCACGGAGTGGGTGGGGGCTCG
Sec_mon		GTCCGTCGCTCGGCC--TATGCCTCGACCACCTCCCCTCCACGGAGTGGGTGGGGGCTCG
Tae_cm		GACCGTCGCTCGGCCAAT--GCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG
Thino_bes	GTCCGTCGCTTGACCAAT--GCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG
Thino_elon	GTCTGTCGCTCGACCAAT--GCCCCGACCACCTCCCCTCCTTGGAGTGGGTGGGGGCTCG
Trit_mon	GTCCGTCGCTCGGCCAATATGCCTCGACCACCTCCCCTCCTTGGAGTGGGTGGGGGCTCG


Aeg_tau		GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT
Aust_pect	GGGTAAAAGAACC-ACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACTCGGGGGCAT
Bromus[tec]	GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGTCTAACCCGAGGGCAT
Crith_del	GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT
Hen_pers	GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT
Psa_junc	GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT
Pse_lib		GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT
Pse_spic	GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT
Sec_cer		AGGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACACGGGGCCAT
Sec_mon		AGGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACACGGGGCCAT
Tae_cm		AGGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGTGGGCAT
Thino_bes	GGGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACTCGGGGGCAT
Thino_elon	GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT
Trit_mon	GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT


Aeg_tau		GGCTA-GCTTGCTAGCCGTCCCTTGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Aust_pect	GGCTA-GCTTGCTAGCCGTCCCCCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Bromus[tec]	GGCTA-GCTTGCTGGTCATCTCTTGGGTTGCAATCGTATTTAATCCACACGACTCTCGGC
Crith_del	GCCTA-GCTTGCTAGGCGTCCCTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Hen_pers	GGCTA-GCTTGCTAGCCGTCCCTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Psa_junc	GGCTA-GCTTGCTAGCCGTCCCCCGTGTTGCGAAGCTATTTAATCCACACGACTCTCGGC
Pse_lib		GGCTA-GCTTGCTAGCCGTCCCCCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Pse_spic	GGCTA-GCTTGCTAGCCGTCCCCCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Sec_cer		GGCTA-GCTTGCTAGCTGTGACTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Sec_mon		GGCTA-GCTTGCTAGCTGTGACTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Tae_cm		GGCTA-GCTTGCTAGCCGTCCCATGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Thino_bes	GGCTA-GCTTGCTAGCCGTCCCTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Thino_elon	GGCTA-GCTTGCTAGCCGTCCCTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC
Trit_mon	GGCTA-GCTTGCTAGCCATCCCTTGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC


Aeg_tau		AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Aust_pect	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Bromus[tec]	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Crith_del	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Hen_pers	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Psa_junc	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Pse_lib		AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Pse_spic	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Sec_cer		AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Sec_mon		AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Tae_cm		AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Thino_bes	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Thino_elon	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA
Trit_mon	AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA


Aeg_tau		ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Aust_pect	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Bromus[tec]	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Crith_del	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Hen_pers	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Psa_junc	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Pse_lib		ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Pse_spic	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Sec_cer		ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Sec_mon		ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Tae_cm		ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Thino_bes	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Thino_elon	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG
Trit_mon	ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG


Aeg_tau		CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCACCCTCATCGGGA
Aust_pect	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCCCC-TCATCGGGA
Bromus[tec]	TCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTTCCAACC-CTCTCATCGGGG
Crith_del	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCCCACTCATTGGAT
Hen_pers	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACA-CCCTCATCGGGA
Psa_junc	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCCCCTTCATCGGGA
Pse_lib		CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAATC-CCCTCATCGGGA
Pse_spic	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAATC-CCCTCATCGGGA
Sec_cer		CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCA-CACCCCTCATTGGGA
Sec_mon		CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCA-CACCCCTCATTGGGA
Tae_cm		CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCCCCCTCATCGGGA
Thino_bes	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAAAC-CCCTCATCGGGA
Thino_elon	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAAAC-CCCTCATCGGGA
Trit_mon	CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACC-CCCTCATCGGGA


Aeg_tau		ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Aust_pect	ATTGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Bromus[tec]	ATCGGGATGCGGCATATGGCCCCTCGTCTCGCAAGGGACGGTGAGCCGAAGATTGGGCTG
Crith_del	TTTGGGATGCGGCCTCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Hen_pers	ATTGGGATGCGGCATCTGGTCCCTCGTCTCTCAAGGGACGGTGGACCGAAGATCGGGCTG
Psa_junc	ATAGGGATGCGGCATATGGTCCCTCGTCTCGCAAGAGGCGGTGGGCCGAAGATCGGGCTG
Pse_lib		ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Pse_spic	ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Sec_cer		ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGTTCGGGCTG
Sec_mon		ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGTTCGGGCTG
Tae_cm		ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Thino_bes	ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Thino_elon	ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG
Trit_mon	ATCAGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG


Aeg_tau		CCGGTGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Aust_pect	CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTAGCTTTA-TCAACGCAGTGC
Bromus[tec]	CCGACGTATCGTGTCGGACACAGCGCATGGTGGGCGTCTTTGCTTTA-TCTGCGCAGTGC
Crith_del	CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Hen_pers	CCGGTGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Psa_junc	CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTTGCTTTA-TCAACGCAGTGC
Pse_lib		CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Pse_spic	CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Sec_cer		CCGGCGTACCGTGTCAAACACAGCGCGTGGTGGGCGTCTTTGCTTTA-TCAACGCAGTGC
Sec_mon		CCGGCGTACCGTGTCAAACACAGCGCGTGGTGGGCGTCTTTGCTTTA-TCAACGCAGTGC
Tae_cm		CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Thino_bes	CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Thino_elon	CCGGCGTACCGCGTCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC
Trit_mon	CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC


Aeg_tau		ATCCGACGCGCAGCCGACATTATGGCCTCAGAACGACCCAGCAAACGAAGCGCACGTCGC
Aust_pect	ATCCGACGCGCAGCCGGCATGATGGCCTCAAAACGACCCAGCGAACGAAGCGCACGTCGC
Bromus[tec]	ATTCGATGCGTAGCCG-CATGATGGCCTAAAAAAGACCCAACTAACCGAGCGCGTGTCGC
Crith_del	ATCCGACGCGCAGCCGACATGATGGCCTCAAAACGACCCAGCAAACGAAGCGCACGTCGC
Hen_pers	ATCCGACGCGTAGCCGACATGATGGCCTCAAAACGACCCAGTAAACGAAGCGCACGTCGC
Psa_junc	ATCCGACGCGTAGCCGGCGTGATGGCCTCAAAACGACCCAGGAAACGAAGCGCACGTCGC
Pse_lib		ATCCGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAGCAAACGAAGCGCACGTCGC
Pse_spic	ATCCGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAGCAAACGAAGCGCACGTCGC
Sec_cer		ATACGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAACAAACGTAGCGCACGTCGC
Sec_mon		ATACGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAACAAACGTAGCGCACGTCGC
Tae_cm		ATCCGACGCGCAGCCGGCATGATGGCCTCAAAACGACCCAGCAAACGAAGCGCACGTCGC
Thino_bes	ATCCGACGCGCAGCCGGCATGCTGGCCTCAAAATGACCCAGCAAACGAAGCGCACGTCGC
Thino_elon	ATCCGACGCGCAGCCGGCATGATGGCCTCAAAACGACCCAGCAAACGAAGCGCACGTCGC
Trit_mon	ATCCGACGCGCAGCCGGCATGACGGCCTCAAAATGACCCAGCAAACGAAGCGCACGTCGC



Aeg_tau		TTCGACC
Aust_pect	TTCGACC
Bromus[tec]	TTCGATC
Crith_del	TTCGACC
Hen_pers	TTCGACC
Psa_junc	TTCGACC
Pse_lib		TTCGACC
Pse_spic	TTCGACC
Sec_cer		TTCGACC
Sec_mon		TTCGACC
Tae_cm		TTCGACC
Thino_bes	TTCGACC
Thino_elon	TTCGACC
Trit_mon	TTCGACC

;

endblock;

begin assumptions;
	usertype nucleotide stepmatrix = 4 ACGT
		0 3 1 3
		3 0 3 1
		1 3 0 3
		3 1 3 0
		;
		
	usertype reverse stepmatrix = 4 ACGT
		0 1 3 1
		1 0 1 3
		3 1 0 1
		1 3 1 0
		;


	usertype transversion stepmatrix = 4 ACGT
		0 1 0 1
		1 0 1 0
		0 1 0 1
		1 0 1 0
		;


	usertype transition stepmatrix = 4 ACGT
		0 0 1 0
		0 0 0 1
		1 0 0 0
		0 1 0 0
		;

		
	endblock;