#NEXUS
[Triticeae, 5S sequences, long locus, with polymorphisms; 10/92]
begin data;
		dimensions ntax=12 nchar=570;
		format datatype=dna interleave missing=- equate="1={A-} 2={C-} 3={G-} 4={T-}";
		matrix
Aeg_spelt		-TTTTTAA-TTAKTTTTT-GCGCCWYG-TGACAAMCATATCGCACRTGYGYGA-----TATAWATK-AATCCCGTTATAKTATTT-TTGASGTTTGCGAYATG-TT
Aeg_tau			-TTTTTAA-TTAKTTTTTG2CGCCTCG-TGACAAACATATCGCATGTGCGCGA-----TATATATT-AACCCCGTYATATTATTT-TTGAYATTTGCGATATG-TT
Agro_cris		TTTTTWAAW--TTTTTTTG-CGACTCR-WGAYAGASATGWCGCACGTGCGCGA-----TATATATT-AACMY-GTTATTTTATTT-TTDACGTTYGCGATAYG-TT
Aust_ret		4TTTTTAA-TTATTTTT-G-CGCRCWY3TGACAAACARARCGYACGTGCSSGH-----TGTRYATT-AACATTGTTWTC4TTTTTTTTGACGYRYGCSATATGYTY
Crites[_brev]	TTTTTTAA-TATATTTTTG-CTCCACGC-GAGAAACATGACGCGCGTGCGCG------TATTTATT-AAACAATGCATCTTATTT-TTGACGTTTGCGGTAAG-TT
Das_vil			-TTTTTAA14TTTTTTTTG-CGCGTCGY-GASAAAGATAACGCACGTGCKCGA-----TATATATT-AAACRCGTTTTCATAGTT-TTGACGTTGTGGATSTG-AT
Hord_bulb		TTTTTGAA-TATATTTTTG-CGCCACG-TGGCAGCGA1ATGACGCACGTGAGTC4134TATATAT-GAAGCCCATTTYATTATTT-TTGACRTTTTGTGAAGTGTT
Pse_spic		TTTTTTAATTTTTTTTTTG-CGACTCA-TGACAAACAAAACGCACGTGCGCGA-----TATATATT-AACCCTGTTATATTATTT-TTGACGTTTGCGATATG-TT
Sec_cer			-TTTTTAAWTTTTTTTT4G-CGTGTCG-TGAGAAACRAAATGCACGTGCGTGA-----TATATATT-AACCT2GTTATATYATTTATTGACGTTTGCGATAT--TT
Sec_mon			-TTTTTAA-TTTTTTTT4G-CGTGTCG-TGAGAAACAAAATGTACGTGCGTGA-----TATATATT3AACCYCGTTATATTATTTATTGACGTTTGCGATAT--TT
Thino_elon		-TTTTTAA-TTATTTTTTG-CGCCTCG-TGACAAACATGTCGCACGTGCGTGA-----TATATATT-AACCCCGCTGTATTCTTT-TTGACATTTCCTATATG-TT
Trit_mon		-TTTTTAA-TTATTTTTTG-TACGTACATGAGGAACAGAACGCACGTGCGTGA-----TATATATT-AAGCCTGTCATCATATTT-TTAACATTTGCGATATGTTT

Aeg_spelt		TAAGCTCGMTGYTCA-TTGCTCGCGC-GTCTTGGGGCR-GCWTTG---TGGCGC-G-AAG----AGCGCG-TT-C2TGAAA-GGGGTGGMAAAAMYW-------------CG-TGTYGS--T
Aeg_tau			TTAGCTCGYTGCTCA-TTGGTCAMGC-GTCTAGAGGYG-GCTTTG---TGGCGY4G-ASG----A3CGCS-TY-C-TGWAA-GGGRT-AAAAAA1TA-------------CG1TGTTGC21T
Agro_cris		TAAGCTCGCTGCTGA-ATACTCAYSC-34STAGGGGCG2GCGTCG---TGGCGC-GAAA-----AGCGCG-CT-C-TCARA--TGGTGGAAAA--TA-------------2G-CGTTGC--C
Aust_ret		-TAGCTCGCTGCTCR-TTACTCACGC-GTCWAGRGGCG-GCG443---4GGCGC-GRAAA-----32GYK-TY-B-YS1AAGSGC-TG-AAAAAATA-------------CG-TGTYGC--Y
Crites[_brev]	ATAGCTTGCGGCGCA-CTACTMACGC-GTCTAGGGGCG-GCRTTGCGGTGGCA------WTGGTACCGCG-TT-G-TGAAA-GGGGTCGAAA-----CCGCGGTAGAACTCG-TGTTGG--T
Das_vil			WTAGGTCGCTGGTCA-TTAYTCACGC-GTGMTGGGGCG-GCGTTG---TGKCGC-AAAA-----AGCGCG-TT-C--KAAAT-GGGTTGGAAAA-CA-------------CG-TGTTGC--T
Hord_bulb		TTAGCTCACGGCTCA-TTGTTCAGGC-GTATATGTGCG-GCAAGGGCGTT-CG--GAAAGTGGT-----------------CGGGGACGTGTTA-----GCG------CTCG-TGTT3G--T
Pse_spic		TAAGCTCGCTGCTCA-TTACTCACGCACTCTAGGGGCG-GCGTTG---TGGCGC-GAAA-----AGCG---TT-C-TCAAA--GGGTGGAAAA--TA-------------CG-TGTTGC--C
Sec_cer			TTAGCTCGCTGMTCA-TAACTCACGC-GTGTAGGGGCG-GCGTTG---TGACGC-G-AAA----AGCGCG-TT-C-TGAGAAGGGA-GG--AAAATA-------------CG-TGYTGC--T
Sec_mon			TTAGCTCGCTGCTCA3TAACTCACGC-GTGTAGGG23S-GCGTTG---TGACGC-G-AAA----AGCGCG-TT-C-TGAGAAGGGA-GG--AAAAWA-------------CG-YGTTGC--T
Thino_elon		TTAGCTCGCTGCTCA-TTGCTCACGC-GTCTAGGGGCG-GCCTTG---TGGCGC-G-AAG----AGCGC-ATTGC-TGAAAGGGG-TG-AAAAAATA-------------CG-TCTTGC--T
Trit_mon		TTAGCTCGGAGCTCA-TTAGTCACGC-GTCTAGGGAGA-G--TTG---GGGCGC-G-AAA----AGCG---TT-C-TGAAAGGGG-TGT--AAAATA-------------CGGTGTTGC--T

Aeg_spelt		-GYGGTAY-GG1GGGA-GG-GGTGGARACYGTGGWAAACTCGTCT-YCGTGATTGA--G2CGGGAGAKTAAGTAG----TATAGGACA-TYATCC--ATTGTTA-GGGAACGGTTG
Aeg_tau			-GYGGTATAG-AGGGAR-G-GGTGGAAACCGTGGTAAACTCGTCT-YCGTGTTTGA3GG3GGGGGGAGTAAGTAGTATATATAGGGCA-TTATCC--ATTATTA-GGCWRMGGTTG
Agro_cris		-GCGGTATAG-WGGGA33GGGGTGRAACCMRTGGTAAACTCGTCT-CCGTAGTTRA--G-YRGGRKCGTAAGTAG----TRYAKGRCA-TCATCC--ATCRT-AAGGGAACRGTCG
Aust_ret		-GCRGYATWG-AGSGA-GG-KGTGGCAACCGTGGTAAACTCGTCT-TCGTAGCCGA--R-TGGGAKAGTAAGTAG----TAYAGGGMA-TTATCC--RTTATTA-GGCAACGGTTG
Crites[_brev]	-GCGGTAGAG-AGGGAA--SGGTGGAAACGSTKGAAAACCCGTCT-TTGTTGTTGA--G-CGGGAGAATACGTGG----TACGGYGCGG-TATCC--GTTATTA-GGAG-CGGTGG
Das_vil			-GCGGCAGAG-AGGGA-GG-GGTGGAAACCGTGGTAAACTCGTCT-CCGYAGTTGA--G-C3GGAGAGTAAGTAG--------GMGK------------------GGCAACGGTTG
Hord_bulb		CGAGGTAGAG--GGGT3-GS-GCGAAATCYGTGGTAACCTCGTGT-CCGTTGTTGA--G-CGGGAGGGTGAGTA3----TGTGGTGCGG-TATCC--ATTACTAGGCGAATGGTGG
Pse_spic		-GCGGTATAG-AGGGA--G-GGTGGAAACCGTGGTAAAGTCGTCT-CCGTAGTTGA--G-CGGGAGAGTAAGTAG----CATAGGACACTTATCC--ATTGTTA-GGCCAAGGTTG
Sec_cer			-GCGGTATAG3AGGGA-GG-GGTGGAAACCGTGGTAAACTCGTCT-CCGTAGCTGR--G-MGGGAGAGTGAGTAG----TATAGGGCA-TTAGCC--ATTATTA-GGCAACGGTCG
Sec_mon			-GC3GTATAG-AGGGA-GG-GGTGGAAACCGTGRTAAACTCGTCT-CCGTAGYTGA--G-CGGGAGRGTGAGTAG----TATAGGGCA-TTAGCC--ATTATTA-GGCAACGGTCG
Thino_elon		-GCTGTATAG-AGGGA-GG-GGTAGAAACCGTGGTAAACTCGTCC-CCGTGTTTGA--G-CGGGACATTAAGTAG----TATAG-CGA-TTATCC--ATTATTA-GGCAACGGTTG
Trit_mon		-GCGGTATAG-AGGGA-GG-GGTGGAAATCATGGTAAACTCGTCT-TCGTAGTTGA--G-CGAGAGAGTAAGTAG----TATAGGGCA-TTATCC--ATTAGTA-GGCGACGGT-G

Aeg_spelt		TAA-TGGTAGTGA----GAA-TGTAGAA-TCGTCTDTGGAGCGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGAC-GGGSMARCA-TGTCGGA-TGC-GAYCAT-A
Aeg_tau			TAA-TGGTAGTAA----GAA-TK-ACAA-TCATCTTTGYAGTGGA3CCT3GGA-GTGGCAAGCA-TAAGGGA3CG--AAGGCGGGSGTAACA-TGTCGGA3TGC1GATCAT-A
Agro_cris		TAA-TGSTAGTAA----GAA-TGTGCAA-TCGTSWTTGTTGTGGA-CCTGSGA-GYGGAAAGCA-TAWSGGA-CG--AAGACGGGGGTA12A-TGTCGGA-TGC-GRTCAT-A
Aust_ret		TAA-TGATWGTAG----GRA-TGCACAAT-CGCCTTTCTCATGGA-CCWKGGA-GCGGCAAGCA4TAAGGGG-CG--AAGGCGGGGGTAACA-TGTCGGA-TGC-GATCAT1W
Crites[_brev]	-------------AAAAGAA-YRTACGG-AGGTGTTTATGGTGGAGC-TGAGA-GGGGCTAGAA-TAAGGGA-CG--AAGGCGGRAGTAACA-TGTCGGA-TGC-GATCAT-A
Das_vil			TAA-TGGTMGTARGAAAGAA-TGTRCAA-ACGTCTTTGTAATGGA-CCTGGGA-GGGGCAAGCA-TAAGGGA-CG--RAGGCGGGAGTAACA-TGTCGGA-TGC-GATCAT-A
Hord_bulb		TGA--------------GAA-TGCACGGCCCGTCTTTTTAGTGAA-CGTGGGA-GGGACT-GCA-TAAGGAAAC---AAATAGTTATGAASA-TGTCGGA-TGC-GATCAT-A
Pse_spic		TCA-TGGTAGTAA----GAA-TGTACAA-TCGTCATTGTTGTGG--CCTAGGAAGTGGCAAG-AATAAGGAA-CG--AAG-GGGGGGTAACA-TGTCGGA-TGC-GATCAT-A
Sec_cer			TGAA-GGTGGCAA----GAG-TGTAATAC-CGTCTTCGTACTGGA-CCTGGGA-GTGGCAAGCA-TAAGGSA-CG-1AAGGCAGGGGTAACA-TGTCGGA-TGC-GATCAT-A
Sec_mon			TGAA-GGTRGYAA----GAG-TGTAATAC-SGTCTTCGTACTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGGCAGGGGTAACA-TGTCRGA-TGC-GATCAT-A
Thino_elon		TAA-TGGTAGTAA----GAA-TGTACAAT-CGTCTTTGTAGTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGGCGGGGGTAACAC-GCCGGA-TGC-GATCAT-A
Trit_mon		TAA-TGGTAGTAG----GAA-TGTATAGC-CGTCGGTGTAGCGGA-CGTGGGA-GTGGCAAGC-TTAAGGGA-TG--AAGCC-GGGGTAACA-TGTCGGA-TGC-GATCAT-A

Aeg_spelt		CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACKAGGATGGGTGACCTCCTGGGAAG-TCCTYGTGTT
Aeg_tau			CCAGCACTAAMG-C-W2C-GGATCCCAT-CA32AMCTYYKAAGTTAAGCGTGCTTGGGCGAGAGTWGTACTAGGATGGGTGACCTC24333AAG2TCCTCGTGTT
Agro_cris		YCAGCACTAAAG-S-ACY-GGATCCCAT-CAG-AACTCCRAWGTTAAGCGTGCTTGGRSGAGAGTAGTACTAGGATGGGTGACCTCYTGGGAAG-TCCTCRTGTT
Aust_ret		CCAGCACTAAAG-C-ACY-GGATCCYAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
Crites[_brev]	CCAGCACTAAAG-C-ACC-GGATCCCATY-AG-AACTCC3AAGTTAAGCGTGCTTGGGCGAGAGWAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTSGTGYT
Das_vil			CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
Hord_bulb		CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTGGGAAG-TCCTCGTGTT
Pse_spic		CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TACTCCTGTT
Sec_cer			CCAGCACTAAAG-C-ACC-GGATCCCAT-CAR-AAMTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
Sec_mon			CCAGCACTAAA3Y2-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTRGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCRTGTT
Thino_elon		ATGGCAGTAAAG-C-TGT-GGATCCCAT-GAG-AACTCTGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAG-TCCTCGTGTT
Trit_mon		CCAGCACTAAAG-C-ACC-GGATCCCATT-AG-AACTCTGATGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT

Aeg_spelt		GCATTCCC
Aeg_tau			GCATTCCC
Agro_cris		GCATTYCC
Aust_ret		GYATTCCC
Crites[_brev]	GCATTCCC
Das_vil			GCATTCCC
Hord_bulb		GCATTCC-
Pse_spic		GCATTCCC
Sec_cer			GCATTCCM
Sec_mon			GCATTCCM
Thino_elon		ACATTCCC
Trit_mon		GCATTCCC
;

end;