#NEXUS
[Triticeae, 5S sequences, long locus, with polymorphisms; 10/92 570 chars]
begin data;
		dimensions ntax=15 nchar=716;
		format datatype=dna symbols="05" interleave missing=- equate="1={A-} 2={C-} 3={G-} 4={T-}";
		matrix
Aeg_sears		-TTTTTAA-TTATTTTTTG-CGCCTCG-TGACAAACATATCGCACGTGCGCGA-----TATATATT-AACCCCGTTATATTATTT-TTGACGTTTGCGATATG-TT
Aeg_shar		-TTTTTAA-TTATTTTTTG-CGCCTCG-TGACAAACATATCACACGTGCGCGA-----TATATATT-AACCCCGTTATATTATTT-GTGACGTTTGTGATATG-TT
Aeg_spelt[2]	-TTTTTAA-TTATWTTTT-SCGCCTTG-TGACAAACATATCGCACGTGCGCGA-----TATAYATT-AATCCCSTTATATTATTT-TTGACGTTTGCGACATG-TT
Aeg_tau			-TTTTTAA-TTAKTTTTTG2CGCCTCG-TGACAAACATATCGCATGTGCGCGA-----TATATATT-AACCCCGTYATATTATTT-TTGAYATTTGCGATATG-TT
Aeg_umb			-TTTTTAA-TTATTTTTTG-CGCCTAG-TGACAAACATATCGCACGTGCGCGG-----TATATATT-AACCCCGTTATATTATTT-TTGACRTTYGCGATATG-TT
Agro_cris		TTTTTWAAW--TTTTTTTG-CGACTCR-WGAYAGASATGWCGCACGTGCGCGA-----TATATATT-AACMY-GTTATTTTATTT-TTDACGTTYGCGATAYG-TT
Aust_ret		4TTTTTAA-TTATTTTT-G-CGCRCWY3TGACAAACARARCGYACGTGCSSGH-----TGTRYATT-AACATTGTTWTC4TTTTTTTTGACGYRYGCSATATGYTY
Aust_vel		4TTTTTMA-TTTTTTT4-VYGR-CTCG-TGACAAACAKAACRCACGTGCGCGA-----TATATATY-AACAGWGTTATC-TTATTTTTGACGTATGCGATATGTTT
Crites_brev		TTTTTTAA-TATATTTTTG-CTCCACGC-GAGAAACATGACGCGCGTGCGCG------TATTTATT-AAACAATGCATCTTATTT-TTGACGTTTGCGGTAAG-TT
Das_vil			-TTTTTAA14TTTTTTTTG-CGCGTCGY-GASAAAGATAACGCACGTGCKCGA-----TATATATT-AAACRCGTTTTCATAGTT-TTGACGTTGTGGATSTG-AT
Pse_spic		TTTTTTAATTTTTTTTTTG-CGACTCA-TGACAAACAAAACGCACGTGCGCGA-----TATATATT-AACCCTGTTATATTATTT-TTGACGTTTGCGATATG-TT
Sec_cer			-TTTTTAAWTTTTTTTT4G-CGTGTCG-TGAGAAACRAAATGCACGTGCGTGA-----TATATATT-AACCT2GTTATATYATTTATTGACGTTTGCGATAT--TT
Sec_mon			-TTTTTAA-TTTTTTTT4G-CGTGTCG-TGAGAAACAAAATGTACGTGCGTGA-----TATATATT3AACCYCGTTATATTATTTATTGACGTTTGCGATAT--TT
Thino_el		-TTTTTAA-TTATTTTTTG-CGCCTCG-TGACAAACATGTCGCACGTGCGTGA-----TATATATT-AACCCCGCTGTATTCTTT-TTGACATTTCCTATATG-TT
Trit_mon[1]		-TTTTTAA-TTATTTTTTG-TACGTACATGAGGAACAGAACGCACGTGCGTGA-----TATATATT-AAGCCTGTCATCATATTT-TTAACATTTGCGATATGTTT

Aeg_sears		TTAGCTCGCTGCTCA-TTGGTCACGC-GTCTAGAGGCG-GCTTTG---TGGCAC-G-AGG----AGCGCG-TT-C-TGAAA-GGGGTGAAAAAA-TA-------------CG-TGTTGC--T
Aeg_shar		TTAGCTCGCTGCTCA-TTGGTCACGC-GTCTAGAGGCG-GCTTTG---TGGCAC-G-AGG----AGCGCG-TT-T-TGAAA-GGGGTGAAAAAA-TA-------------CG-TGTTGG--T
Aeg_spelt[2]	TAAGCTCGATGCTCA-TTSSTCGCGC-GTCTTGGGGCG-GCTTTG---TGGCGC-G-AAG----AGCGCG-TT-C-TGAWA-GGG3T3GAAAAAACT-------------CG-TGTTGC--4
Aeg_tau			TTAGCTCGYTGCTCA-TTGGTCAMGC-GTCTAGAGGYG-GCTTTG---TGGCGY4G-ASG----A3CGCS-TY-C-TGWAA-GGGRT-AAAAAA1TA-------------CG1TGTTGC21T
Aeg_umb			TTAGCTCGCTGCTCA-TTGGTCACGC-GCCTAGAGGCG-GCTTGG---TGGCGC-G-AGG----ARCGCG-TT-C-TGAAA-GGGATGAAAAAA-TA-------------CG-TGTTGC--T
Agro_cris		TAAGCTCGCTGCTGA-ATACTCAYSC-34STAGGGGCG2GCGTCG---TGGCGC-GAAA-----AGCGCG-CT-C-TCARA--TGGTGGAAAA--TA-------------2G-CGTTGC--C
Aust_ret		-TAGCTCGCTGCTCR-TTACTCACGC-GTCWAGRGGCG-GCG443---4GGCGC-GRAAA-----32GYK-TY-B-YS1AAGSGC-TG-AAAAAATA-------------CG-TGTYGC--Y
Aust_vel		-TAGCTCKYTGCTCA-TTASTCACGC-RTCTAGGRGCR-SSGTWG---TGGCG-MGAAWA-----32GCG-TT-C-TCAAAGGGG-TGR--AAAATA-------------CG-TGTTAA--C
Crites_brev		ATAGCTTGCGGCGCA-CTACTMACGC-GTCTAGGGGCG-GCRTTGCGGTGGCA------WTGGTACCGCG-TT-G-TGAAA-GGGGTCGAAA-----CCGCGGTAGAACTCG-TGTTGG--T
Das_vil			WTAGGTCGCTGGTCA-TTAYTCACGC-GTGMTGGGGCG-GCGTTG---TGKCGC-AAAA-----AGCGCG-TT-C--KAAAT-GGGTTGGAAAA-CA-------------CG-TGTTGC--T
Pse_spic		TAAGCTCGCTGCTCA-TTACTCACGCACTCTAGGGGCG-GCGTTG---TGGCGC-GAAA-----AGCG---TT-C-TCAAA--GGGTGGAAAA--TA-------------CG-TGTTGC--C
Sec_cer			TTAGCTCGCTGMTCA-TAACTCACGC-GTGTAGGGGCG-GCGTTG---TGACGC-G-AAA----AGCGCG-TT-C-TGAGAAGGGA-GG--AAAATA-------------CG-TGYTGC--T
Sec_mon			TTAGCTCGCTGCTCA3TAACTCACGC-GTGTAGGG23S-GCGTTG---TGACGC-G-AAA----AGCGCG-TT-C-TGAGAAGGGA-GG--AAAAWA-------------CG-YGTTGC--T
Thino_el		TTAGCTCGCTGCTCA-TTGCTCACGC-GTCTAGGGGCG-GCCTTG---TGGCGC-G-AAG----AGCGC-ATTGC-TGAAAGGGG-TG-AAAAAATA-------------CG-TCTTGC--T
Trit_mon[1]		TTAGCTCGGAGCTCA-TTAGTCACGC-GTCTAGGGAGA-G--TTG---GGGCGC-G-AAA----AGCG---TT-C-TGAAAGGGG-TGT--AAAATA-------------CGGTGTTGC--T

Aeg_sears		-GTGGTATAG-AGGGA-GG-GGTAGAAACCGTGGTAAACTCGTCT-CCGTGTTTGA--G-GGGCAGAGTAAGTAGTATATACAGGGCA-TTATCC--ATTATTA-GGCAACGGTTG
Aeg_shar		-GTGGTATAG-AGGGA-GG-GGTGGAAACCGTGGTAAACTCGTCT-CCGTGTTTGA--G-GGGGAGAGTAAGTAGTATATATAGGGCA-TTATCC--ATTATTA-GGCAACGGTTG
Aeg_spelt[2]	-GCG3TAT-33AG3GA-GG-33TG3AGACTGTGGAAAACTCGTCT-CCGTGATTGA--G-CGGGAGAGTAAGTAG----TATMGGACA-TCATCC--ATTGTTA-GGGAACGGTTG
Aeg_tau			-GYGGTATAG-AGGGAR-G-GGTGGAAACCGTGGTAAACTCGTCT-YCGTGTTTGA3GG3GGGGGGAGTAAGTAGTATATATAGGGCA-TTATCC--ATTATTA-GGCWRMGGTTG
Aeg_umb			-GCGGYATAG-AGGGA-GG-GGTGGAAACCGTGGTAAACCMGTTT3CYGTGTTTGA--GGGGG2AGAGTAA3TASTATATATAGGGCA-TTATCC--ATTATTA-GGCAACGGTTG
Agro_cris		-GCGGTATAG-WGGGA33GGGGTGRAACCMRTGGTAAACTCGTCT-CCGTAGTTRA--G-YRGGRKCGTAAGTAG----TRYAKGRCA-TCATCC--ATCRT-AAGGGAACRGTCG
Aust_ret		-GCRGYATWG-AGSGA-GG-KGTGGCAACCGTGGTAAACTCGTCT-TCGTAGCCGA--R-TGGGAKAGTAAGTAG----TAYAGGGMA-TTATCC--RTTATTA-GGCAACGGTTG
Aust_vel		-RCKGTATAG-AGGYA-GG-GGTGGAAACCGTGGTAAMCTCGTCT-TCGTAKTTGA--G-TGGGAGARTAAGTGG----TRTAGGGCA-TTGTCC--ATTAYTA-GGCAACGGTTG
Crites_brev		-GCGGTAGAG-AGGGAA--SGGTGGAAACGSTKGAAAACCCGTCT-TTGTTGTTGA--G-CGGGAGAATACGTGG----TACGGYGCGG-TATCC--GTTATTA-GGAG-CGGTGG
Das_vil			-GCGGCAGAG-AGGGA-GG-GGTGGAAACCGTGGTAAACTCGTCT-CCGYAGTTGA--G-C3GGAGAGTAAGTAG--------GMGK------------------GGCAACGGTTG
Pse_spic		-GCGGTATAG-AGGGA--G-GGTGGAAACCGTGGTAAAGTCGTCT-CCGTAGTTGA--G-CGGGAGAGTAAGTAG----CATAGGACACTTATCC--ATTGTTA-GGCCAAGGTTG
Sec_cer			-GCGGTATAG3AGGGA-GG-GGTGGAAACCGTGGTAAACTCGTCT-CCGTAGCTGR--G-MGGGAGAGTGAGTAG----TATAGGGCA-TTAGCC--ATTATTA-GGCAACGGTCG
Sec_mon			-GC3GTATAG-AGGGA-GG-GGTGGAAACCGTGRTAAACTCGTCT-CCGTAGYTGA--G-CGGGAGRGTGAGTAG----TATAGGGCA-TTAGCC--ATTATTA-GGCAACGGTCG
Thino_el		-GCTGTATAG-AGGGA-GG-GGTAGAAACCGTGGTAAACTCGTCC-CCGTGTTTGA--G-CGGGACATTAAGTAG----TATAG-CGA-TTATCC--ATTATTA-GGCAACGGTTG
Trit_mon[1]		-GCGGTATAG-AGGGA-GG-GGTGGAAATCATGGTAAACTCGTCT-TCGTAGTTGA--G-CGAGAGAGTAAGTAG----TATAGGGCA-TTATCC--ATTAGTA-GGCGACGGT-G

Aeg_sears		TAA-TGGTAGTAA----GAA-TG-ACAA-TCATCTTTGCAGTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--CAGGCGGGGGTAACA-TGTCGGA-TGC-GATCAT-A
Aeg_shar		TAA-TGGTAGTAA----TAA-TG-ACA-TTCATCCTTGTAGTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--CAGGCGGGGGTAACA-TGTCGGA-TGC-GATCAT-A
Aeg_spelt[2]	TAA-TGGTAGTGA----GAA-TGTAGAA-TCGTCTGTGGAGCGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGAC-GGGGAAACA-TGTCGGA-TGC-GATCAT-A
Aeg_tau			TAA-TGGTAGTAA----GAA-TK-ACAA-TCATCTTTGYAGTGGA3CCT3GGA-GTGGCAAGCA-TAAGGGA3CG--AAGGCGGGSGTAACA-TGTCGGA3TGC1GATCAT-A
Aeg_umb			TAA2TGGTAGTAA----GAA2TG-ACAA2TCATCTCTGCAGTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-SG11AAGGSGGAGGTAACA2TGTCGGA-KGY-GATCAT-A
Agro_cris		TAA-TGSTAGTAA----GAA-TGTGCAA-TCGTSWTTGTTGTGGA-CCTGSGA-GYGGAAAGCA-TAWSGGA-CG--AAGACGGGGGTA12A-TGTCGGA-TGC-GRTCAT-A
Aust_ret		TAA-TGATWGTAG----GRA-TGCACAAT-CGCCTTTCTCATGGA-CCWKGGA-GCGGCAAGCA4TAAGGGG-CG--AAGGCGGGGGTAACA-TGTCGGA-TGC-GATCAT1W
Aust_vel		TAA-YGATAGTAA----GAA-TGTACAAT-CGTCWTTCTCGTGGA-MCTSGGA-GTGRCAAGCA-TAAGKRG-CG--AAGGCGGGKGTAACA-TGTYGGA-TGC-GATCAT-A
Crites_brev		-------------AAAAGAA-YRTACGG-AGGTGTTTATGGTGGAGC-TGAGA-GGGGCTAGAA-TAAGGGA-CG--AAGGCGGRAGTAACA-TGTCGGA-TGC-GATCAT-A
Das_vil			TAA-TGGTMGTARGAAAGAA-TGTRCAA-ACGTCTTTGTAATGGA-CCTGGGA-GGGGCAAGCA-TAAGGGA-CG--RAGGCGGGAGTAACA-TGTCGGA-TGC-GATCAT-A
Pse_spic		TCA-TGGTAGTAA----GAA-TGTACAA-TCGTCATTGTTGTGG--CCTAGGAAGTGGCAAG-AATAAGGAA-CG--AAG-GGGGGGTAACA-TGTCGGA-TGC-GATCAT-A
Sec_cer			TGAA-GGTGGCAA----GAG-TGTAATAC-CGTCTTCGTACTGGA-CCTGGGA-GTGGCAAGCA-TAAGGSA-CG-1AAGGCAGGGGTAACA-TGTCGGA-TGC-GATCAT-A
Sec_mon			TGAA-GGTRGYAA----GAG-TGTAATAC-SGTCTTCGTACTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGGCAGGGGTAACA-TGTCRGA-TGC-GATCAT-A
Thino_el		TAA-TGGTAGTAA----GAA-TGTACAAT-CGTCTTTGTAGTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGGCGGGGGTAACAC-GCCGGA-TGC-GATCAT-A
Trit_mon[1]		TAA-TGGTAGTAG----GAA-TGTATAGC-CGTCGGTGTAGCGGA-CGTGGGA-GTGGCAAGC-TTAAGGGA-TG--AAGCC-GGGGTAACA-TGTCGGA-TGC-GATCAT-A

Aeg_sears		CCAGCAGTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATAGGTGACCTCCTGGGAAG-TCCTCGTGTT
Aeg_shar		CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
Aeg_spelt[2]	CCAGCACTAAAG-C-AC--GGATCCCAT-CAG-AACTCCGAAGTTAAGYGTGCTTGGGCGASAGTAGTACTAGGATGGGTGACMTCCTGGGAAG-TCCTCGTGTT
Aeg_tau			CCAGCACTAAMG-C-W2C-GGATCCCAT-CA32AMCTYYKAAGTTAAGCGTGCTTGGGCGAGAGTWGTACTAGGATGGGTGACCTC24333AAG2TCCTCGTGTT
Aeg_umb			CCAGCACTAAAGC22ACC-GGATCCCAT-CAR-AMCTCCGAAGTTAAGCGTGCTTGGSCGAGAGTARTACTAGGATGVGTGACCTCCTGGGAAG-TCCTCGTGTT
Agro_cris		YCAGCACTAAAG-S-ACY-GGATCCCAT-CAG-AACTCCRAWGTTAAGCGTGCTTGGRSGAGAGTAGTACTAGGATGGGTGACCTCYTGGGAAG-TCCTCRTGTT
Aust_ret		CCAGCACTAAAG-C-ACY-GGATCCYAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
Aust_vel		CCAGCACTAAAG4C-WM--GGATCCCAT1CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATDGGTGACCTCCTGGGAAG-TCSTCGTGTT
Crites_brev		CCAGCACTAAAG-C-ACC-GGATCCCATY-AG-AACTCC3AAGTTAAGCGTGCTTGGGCGAGAGWAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTSGTGYT
Das_vil			CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
Pse_spic		CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TACTCCTGTT
Sec_cer			CCAGCACTAAAG-C-ACC-GGATCCCAT-CAR-AAMTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
Sec_mon			CCAGCACTAAA3Y2-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTRGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCRTGTT
Thino_el		ATGGCAGTAAAG-C-TGT-GGATCCCAT-GAG-AACTCTGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAG-TCCTCGTGTT
Trit_mon[1]		CCAGCACTAAAG-C-ACC-GGATCCCATT-AG-AACTCTGATGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT
	
Aeg_sears		GCATTCCC
Aeg_shar		GCATTCCC
Aeg_spelt[2]	GCATTCCC
Aeg_tau			GCATTCCC
Aeg_umb			GCATTCCC
Agro_cris		GCATTYCC
Aust_ret		GYATTCCC
Aust_vel		GCATTCC2
Crites_brev		GCATTCCC
Das_vil			GCATTCCC
Pse_spic		GCATTCCC
Sec_cer			GCATTCCM
Sec_mon			GCATTCCM
Thino_el		ACATTCCC
Trit_mon[1]		GCATTCCC

[cp DNA Restriction sites; chars = 146]
	
			   
			 [HindIII	    BamHI  			  PstI  KpnI   BglII                       PvuI  ]   
			 [        1111         1111111112222                        11111111122222222        ]  
			 [123456780123  34567890123456780123  2345  12345  12345678901345678902345678  123456]  
Aeg_sears	  500500005000  50500555550500555000  5550  00005  55000500005555000500005000  005555
Aeg_shar	  ---500------  50500555550500555000  5550  00005  55000500005555000500000000  005555
Aeg_spelt	  -00500------  50500555550500555000  5550  00005  55000500005555050505505500  005555
Aeg_tau	  	  500500005000  50500555550500555000  5550  00005  55000500005555005505005050  005555
Aeg_umb	 	  500500005000  505005055-0500555000  5550  00005  55000500005555005505005005  005555
Agro_cris	  500500005500  505055055-0550555000  505-  05005  05005550055555050055005000  005555
Aust_ret	  500500005000  50555555000500555000  --5-  00505  55005500005555550055005000  005555
Aust_vel	  505500005000  50505555000500555000  --5-  00005  55005500005555550055005000  005555
Crites_brev	  000500505000  50505555500500555550  505-  50000  50005500005555550005005000  055055
Dasy_vil[15]  500500005000  55500555550500555000  055-  00005  55000500005555550005055000  005555
Pse_spic	  500500005000  50500555550500555000  055-  00005  55000500005555050505005000  005555
Sec_cer	  	  500500005000  505005555-0500555000  5550  00055  5500---0005555050505005000  005555
Sec_mon	 	  500500005000  505005555-0500555000  5550  00055  5500---0005555050505005000  005555
Thino_el	  500500055000  50500555550500555000  055-  00005  55000500005555550505005000  005555
Trit_mon	  ---500------  50500555550500555000  5550  00005  55000500005555005505005000  000555
	
			[SacI  SalI ScaI          SmaI       XbaI             XhoI  EcoRI                    Del]
			[                   1111                     1111111                1111111111222222    ]
			[1234  123  123467890134  123456789  123567890234567  1234  234567890123456789012345 52 ]
Aeg_sears	 5550  555  500055000505  505005000  000550055055505  5500  550500505500000000000500 00
Aeg_shar	 5550  ---  ------------  505005000  000550055055500  5500  550500505500000000000500 00
Aeg_spelt	 5500  ---  ------------  505005050  000550055055005  5500  550500505500000000000505 0-
Aeg_tau		 5500  555  500055000505  505005000  000550055055505  5500  550500505500000000000005 0-
Aeg_umb		 5500  555  500055000505  505005500  000550055055505  5500  550500505500000000000505 00
Agro_cris	 5500  555  500555500505  500005000  000505050055505  5500  550000055500000000000505 05
Aust_ret	 5500  555  500555500505  500005000  00005500-050505  5500  050000005500000000000505 05
Aust_vel	 5500  555  500555500505  500005000  00005500-050505  5500  550000005500000000500505 05
Crites_brev	 0500  555  500555500005  500000000  000555055555505  5505  550500005500050000050505 00
Dasy_vil[15] 5500  550  500555050505  500000000  000555055055505  5000  550550505500000000050505 50
Pse_spic  	 5500  555  500555050505  500005000  000555055055505  5500  550550505500000000050505 50
Sec_cer		 5500  555  500055000505  505005000  550550055055505  5500  550500505500000000000505 00
Sec_mon		 5500  555  500055000505  505005000  550550055055505  5500  550500505500000000000505 00
Thino_el	 5500  555  500555050505  500005000  000555055055505  5500  550550505500000000050505 50
Trit_mon	 5500  ---  ------------  505005005  000550055055505  5500  550500505550000000000505 00
		 
	 ;
	end;