#NEXUS 


BEGIN DATA;
DIMENSIONS  NTAX=21 NCHAR=2072;
FORMAT MISSING=? GAP=-  INTERLEAVE  DATATYPE=DNA ;

MATRIX

[                      10        20        30        40        50]
[                      .         .         .         .         .]

Phoronis      ---------------------AGTCATATGCTTGTCTCAAAGATTAAGCC   [29]
Paraspadel    --------------------------------------------------   [0]
SaggittaW     --------------------------------------------------   [0]
Artemia       TACCTGGTTGATCCTGCCAGTAG-CATATGCTTGTCTCAAAGATTAAGCC   [49]
Schistosom    AAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAGAGATTAAGCC   [50]
Sagitta_el    --------------------------------------AAAGATTAAGCC   [12]
Moliniform    --------------------------------------AAAGATTAAGCC   [12]
Anemonia      TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [50]
Caenorhabd    TACCTGATTGATTCTGTCAGC-GCGATATGCTCAAGTAAAAGATTAAGCC   [49]
Eurypelma     TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [50]
Placopecte    AACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [50]
Tenebrio_m    TCCCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [50]
Opisthorch    AATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAGAGATTAAGCC   [50]
Scypha        AACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [50]
Chiton        TACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [50]
Snail         TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [50]
Haemonchus    TACCTGATTGATTCTGTCAGC-GCTATATGCTCAGTTTAAAGATTAAGCC   [49]
Nematodiru    TACCTGATTGATTCTGTCAGC-GCTATATGCTCAGTTTAAAGATTAAGCC   [49]
Strongyloc    -ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [49]
Branchiost    --CCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [48]
Saccogloss    -ACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCC   [49]

[                      60        70        80        90        100]
[                      .         .         .         .         .]

Phoronis      ATGCATATCTAAGTACACACTTTC--ACACGGTGAAACCGCGAATGGCTC   [77]
Paraspadel    -----------AGCACATGCCGCC--AAATGGCTAAGC-GCGAACGGCTC   [36]
SaggittaW     -----------AGCACATGCCGCC--AAATGGCTAAGC-GCGAACGGCTC   [36]
Artemia       ATGCATGTCTAAGTACAAGCCCCC--AGTGGGCGAAACCGCGAATGGCTC   [97]
Schistosom    ATGCATGTCTAAGTACATACCTTA--AAACGGTGAAACCGCGAATGGCTC   [98]
Sagitta_el    ATGCAAGTGTCAGCACATGCCGCC--AAATGGCTAAGCCGCGAACGGCTC   [60]
Moliniform    ATGCATGCGTAAGTACATACTTTT--TATGGTGTAAACCGCGAATGGCTC   [60]
Anemonia      ATGCATGTCTAAGTATAAGCACTT--GTACTGTGAAACTGCGAATGGCTC   [98]
Caenorhabd    ATGCATGCTTTGATTCAT-----------CAATGAAATTGCGTACGGCTC   [88]
Eurypelma     ATGCATGTCTAAGTACATGCCTCC--TTAAGGCGAAACCGCGAATGGCTC   [98]
Placopecte    ATGCATGTCTAAGTACATACTTTT--TGATGGTGAAACCGCGAATGGCTC   [98]
Tenebrio_m    ATGCATGTCTCAGTACAAGCCGAA--TTAAGGTGAAACCGCGAAAGGCTC   [98]
Opisthorch    ATGCATGTCTAAGTACAAACCTTC--AAACGGTGAAACCGCGAATGGCTC   [98]
Scypha        ATGCATGTCTAAGTATAAGCGTTCTTATACTGTGAAACTGCGAATGGCTC   [100]
Chiton        ATGCATGTCTAAGTACAGACTTTC--ACATAGTGAAACCGCAAATGGCTC   [98]
Snail         ATGCATGTCTAAGTTCACACTGTC--TCACGGTGAAACCGCGAATGGCTC   [98]
Haemonchus    ATGCATGTC-GAGTTCATCTTT------GAAGAGAAACTGCGAACGGCTC   [92]
Nematodiru    ATGCATGTC-GAGTTCATCTTT-------GAGAGAAACTGCGAACGGCTC   [91]
Strongyloc    ATGCATGTCTAAGTACAAGCTCGT---CTCGACGAAACTGCGGATGGCTC   [96]
Branchiost    ATGCACGTGCAAGTTTAAACT-GT---CTCAGTGAAACTGCGAATGGCTC   [94]
Saccogloss    ATGCATGTCTAAGTACGAGCCTCGGTACACGGTGAAACTGCGAATGGCTC   [99]

[                      110       120       130       140       150]
[                      .         .         .         .         .]

Phoronis      ATTAAATCAGTTATGGTTCCTTAGATCGTACAATCC--TAC---------   [116]
Paraspadel    ATTAAATCAGCTATGGTTCCTTAGATCTTCGGCCGGGCCTTCGC------   [80]
SaggittaW     ATTAAATCAGCTATGGTTCCTTAGATCTTCGGTCGCGTCCTCGGACTGGA   [86]
Artemia       AATAAATCAGTTATGGTTCCTTAGATCGTACTATATCCTAC---------   [138]
Schistosom    ATTAAATCAGCTATGGTTCCTTAGATCGTAAATGC---TAC---------   [136]
Sagitta_el    ATTAAATCAGCTATGGTTCCTTAGATCTTCGGCCGCGTCCTCGGACGTG-   [109]
Moliniform    ATTACATCAGTTGTGGTTCATTAGATCATATGTTTAA-------------   [97]
Anemonia      ATTAAATCAGTTATCGTTTATTTGATTGTACGTTTAC-TAC---------   [138]
Caenorhabd    ATTAGAGCAGATATCACCTTATCCGGGATCCGGATCCTCAT---------   [129]
Eurypelma     ATTAAATCAGTTATGGTTCCTTAGATCGTACCTT-AC-TAC---------   [137]
Placopecte    ATTAAATCAGTTATGGTTCCTTAGATCGTACGATCC--TAC---------   [137]
Tenebrio_m    ATTAAATCAGTTATGGTTCCTTAGATCGTACCCACATTTAC---------   [139]
Opisthorch    ATTAAATCAGCTATGGTTCCTTGGATCGTACATAC---TAC---------   [136]
Scypha        ATTAAATCAGTTATAGTTTATTTGAT-GTTGACTTAC-TAC---------   [139]
Chiton        ATTAAATCAGTTATGATTTCTTAGATCGTACACT-CC-TAC---------   [137]
Snail         ATTAAATCAGTCGAGGTTCCTTAGATGACACGAT-CC-TAC---------   [137]
Haemonchus    ATTAGAGCAGATGTCATTTATTCGGAACGTCCTTT---------------   [127]
Nematodiru    ATTAGAGCAGATGTCATTTATTCGGAAAATCCTTT---------------   [126]
Strongyloc    ATTAAATCAGTTATGGTTCATTGGATCGAGTCCCCCC-GAC---------   [136]
Branchiost    ATTAAATCAGTTATGGTTCCTTTGATCGTCACATCCT--AC---------   [133]
Saccogloss    ATTAAATCAGTTATGGTTCCTTTGATCGTTACCCCTT--AC---------   [138]

[                      160       170       180       190       200]
[                      .         .         .         .         .]

Phoronis      ----TTGGATAACTGTAGTAATTCTAGAGCTAATACATCGAAAC--AAGC   [160]
Paraspadel    GGCTTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGA-CGGCG   [129]
SaggittaW     CGTTTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGA-CGCCG   [135]
Artemia       ----TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCACAA-TAGCC   [183]
Schistosom    ----ATGGATAACTGTAGTAATTCTAGAGCTAATACATGCCTTG-AATCC   [181]
Sagitta_el    GCGTTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCTGA-CGCCG   [158]
Moliniform    ----ATGGATAACTGTGGCAAATCTAGAGCTAATACATGTTTAC-AAGCT   [142]
Anemonia      ----TTGGATAACCGTGGTAATTCTAGAGCTAATACATGCGA-A-GAGTC   [182]
Caenorhabd    ----ATGGATAACTGCGGAAATACTGGAGCTAATACATGCAACT-ATACC   [174]
Eurypelma     ----TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCATCA--GAGC   [181]
Placopecte    ----TTGGATAACTGTGGCAATTCTAGAGCTAATACATGCAAAA--AGGC   [181]
Tenebrio_m    ----TTGGATAACTGTGGTAATTCTAGAGCTAATACATGCAAAC-AGAGC   [184]
Opisthorch    ----ATGGATAACTGTATTAATTCTAGAGCTAATACATGCCACT-ATGCC   [181]
Scypha        ----TTGGATAACCGTGGTAATTCTAGAGCTAATACATGCGTTA-AAGTC   [184]
Chiton        ----TTGGATAACTGTGGTAATTCTAGAGCTAATACATGACGTT--CAGC   [181]
Snail         ----TTGGATAACTGTGGCAATTCTAGAGCTAATACATGCTTAC-CAAGC   [182]
Haemonchus    -----TGGATAACTGCGGTAATTCTGGAGCTAATACATGCAAAT-AAACC   [171]
Nematodiru    ----TTGGATAACTGCGGCAATTCTGGAGCTAATACATGCGTTT-AGGCC   [171]
Strongyloc    ----ATGGATAACTGTGGTAATTCTAGAGCTAATACATGCGTCC-AAGCG   [181]
Branchiost    ----ATGGATAACTGTGGTAATTCTAGAGCTAATACATGCGGAAGAAGCG   [179]
Saccogloss    ----TTGGATAACTGTGGCAATTCTAGAGCTAATACATGCCTAC-CTCGG   [183]

[                      210       220       230       240       250]
[                      .         .         .         .         .]

Phoronis      TCCGACTCGC-----GGGAAGAGCGCTTTTATTAGATCAAAACCAATCG-   [204]
Paraspadel    TCGGGGCCCGCGAGGGTCGCGACGCTTTTATCCCTTCAAGAACCAGCCGG   [179]
SaggittaW     TCGGGGCCCGCGA--GTCGCGACGTGCTTTATCCCGTCAAGACCAGCCGA   [183]
Artemia       CCAACTTCAC-----GGAAGGGGTGCTTTTATTAGATCAAGACCAATCGG   [228]
Schistosom    CTGACC---CGCAAGGGAACGGGTGCATTTATTAGAACAGAACCAATCGG   [228]
Sagitta_el    TCGGG---CCCGCGAGGTCGCGACGTCTTTATGCCGTCAAGACCAGCCGG   [205]
Moliniform    CCGACTTCT------GGAAAGAGCGCTTTTGTTAGATCAAACCAAT----   [182]
Anemonia      CCGACTTCT------GGAAGGGATGTATTTATTAGATTCAAAACCAATGC   [226]
Caenorhabd    CCAACGCAA-------GGCGGGGTGCAATTATTAGAACAGACCAAA----   [213]
Eurypelma     TCCGACCCTCTGG---GGACGAGCGCTTTTATTAGACCAAAACCAATCG-   [227]
Placopecte    ACCGACT------CACGGAGGTGCGATTTTATCAGTCCAAAACCAATCG-   [224]
Tenebrio_m    TCCAACC--GGAAACGGAAGGAGCGCTTTTATTAGATCAAAACCAATCGG   [232]
Opisthorch    CTGACC---CGCAAGGGAACGGGTGGATTTATTAGAACAGAACCAACCGG   [228]
Scypha        CTGACCTCTCGG---GGAAGGGATGTATTTATTAGATCCAAAACCGATGC   [231]
Chiton        TCCGACCTTTTTGCAGGGAAGAGCGCTTTTATTAGATCAAGATCAATCG-   [230]
Snail         TCCGACCCTCGCGGA---AAGAGCGCTTTTATTAGTTCAAAACCAATCGT   [229]
Haemonchus    CTGACTTTT-------GAAAGGGTGCAATTATTAGAGCAAATCAAT----   [210]
Nematodiru    CTGACTTTT-------GAAAGGGTGCAATTATTAGAGCAAATCAAT----   [210]
Strongyloc    CCGACTTTC-----CAGAAGGCGTGCTTTTATTAGGAACAAGACCA----   [222]
Branchiost    CCGACCTCAC----GGTCTGGCGTGCATTTATCAG-ACCAAGACCA----   [220]
Saccogloss    CGCTGACCTC----GCGGGATGCTGCTTTTATTAGGACCAAGACCGACCC   [229]

[                      260       270       280       290       300]
[                      .         .         .         .         .]

Phoronis      ----------------------GGCTCGTCCCCGTCACATTGGTGA-CTC   [231]
Paraspadel    GCAGCGCGGTCTC-CGGACCGTGGCGGCCGACCT---CCTTGATGAACTC   [225]
SaggittaW     CGCACGCGGTTCCTCGGACCGTGGCGGTCGACCT---CCTTGATGAACTC   [230]
Artemia       GGCTTC-----------------------GGCTCGTCTCTTGGTGA-CTC   [254]
Schistosom    GCGCGGCTTCGGCTGTGCCTGCTAC---------ATTCTGTGATGA-CTC   [268]
Sagitta_el    CGCACGCGTCTTC-GGA--CGTGGCGGCCGACCT---CTTTGATGAACTC   [249]
Moliniform    ------------------GATTTCATCCGAAATCACTTAATGCTGA-GTC   [213]
Anemonia      GGGTTCT----------------------GCCCGGTGCTTTGGTGA-TTC   [253]
Caenorhabd    -----------------------CGTTTTCGGACGTTGTTTGTTGA-CTC   [239]
Eurypelma     ----------------------GACTCGTTCCGTATCCCATGGTGA-CTC   [254]
Placopecte    ----------------------GTCGCAAGGCCGTCACTCTGGTGA-ATC   [251]
Tenebrio_m    TGGCGGTCTCCGTC---------------ATCGTACAACTTGGTGA-CTC   [266]
Opisthorch    CGGTGACTTCGGTTGCCGTCGTTGC---------ATTCTGTGATGA-CTC   [268]
Scypha        AGTCGAA----------------------AGGCTGGTTATTGGTGA-TTC   [258]
Chiton        ----------------------GGCCTCGGCCCGTCCTGTTGGTGA-TTC   [257]
Snail         CGTTGCCCTTCAGCGGGCGCGAGCGGGCGCGGCGTCCAACTGGTGA-CTC   [278]
Haemonchus    -----------------------CACTTTCGGGTGCAGTTTGCTGA-CTC   [236]
Nematodiru    -----------------------CTCCTTCGGGTGCTGTTTGCTGA-CTC   [236]
Strongyloc    ------------------GCCCGGTCTCGGCCGGCCACACTGGTGAACTC   [254]
Branchiost    ----------------ACCCGGGGTTCGCCCCGGTCCCTTTGGTGA-CTC   [253]
Saccogloss    GGTGTCCTGCCTCCTTCGCGGGTGGTGGGCCCGGTCCTCCTGGCGAACTC   [279]

[                      310       320       330       340       350]
[                      .         .         .         .         .]

Phoronis      TGGATAACTTTGGGCTGATCGCATGGCCTT--GCGCCGGCGACGTATCTT   [279]
Paraspadel    TGGATAACTCCACT-TGAC-GCACGGCC--TTTGGCCGGCGGCTGATCTA   [271]
SaggittaW     TGGATAACTCCACT-TGACCGCATGGCC--TTG-GCCGGCGGCTGATCTA   [276]
Artemia       TGAATAACTATA-GCCGATCGCACGGTCTC--GCACCGGCGACGTGTCTT   [301]
Schistosom    TGGATAACTTTA--CTGATCGCAGTCGGCCTTGTGTCGGCGACGGATCTT   [316]
Sagitta_el    TGGATAACTCCACT-TGACCGCACGGCC--TTGCGCCGGCGGCTGATCTA   [296]
Moliniform    TGAATAAATTTG--CAGATTGCAGCGGTCTTCGTACCGGCGACGTATCTT   [261]
Anemonia      ATAGTAACT--GATCGAATCGCATGGCCT--TGCGCTGGCGATGTTTCAT   [299]
Caenorhabd    TGAATAAAGCAGTTTAC------TGTCAGTTTCGACTGACTCTATCCGGA   [283]
Eurypelma     TGTATAACTTTGGGCTGATCGCACGGGCTT--GTCCCGGCGACGCATCTT   [302]
Placopecte    TGGATAACTTTGTGCTGATCGCACGGCCCTA-GTGCCGGCGACGTATCTT   [300]
Tenebrio_m    TGAATAACTTTACGCTGATCGCACGGTCT--TGCACCGGCGACGCATCTT   [314]
Opisthorch    TGGATAACTTTA--CTGATCGCAGTCGGCCTTGTGTCGGCGACGG-TCTT   [315]
Scypha        ATGATAACT--GAACGG?TCGCATGGTCT--TGCGCCGGCGATGACTCAT   [304]
Chiton        TGAATAACTTTGTGCTGATCGCATGGCCAC--GCGCCGGCGACGTATCTT   [305]
Snail         TGGATAACTTTGTGCTGATCGCATGGCCTTCTGTGCCGGCGACGCATCTT   [328]
Haemonchus    TGAATAACGCAGCATAT------CGGCGGCTT-GTTCGCCGATATTCCGA   [279]
Nematodiru    TGAATAATGCAGCATAT------CGGCGGCTT-GACCGCTGATAATCCGA   [279]
Strongyloc    TGGATAACACAGCC--GATCGCACGGT-CTTTGCACCGGCGACGGATCCT   [301]
Branchiost    TGGATAACCCAGCC--GATCGCACGGT-CTTCGCACCGGCGACAGATCAT   [300]
Saccogloss    TGGATAACTTGGCG--GATCG-ACGGC-CTCTGC--GGGCGAC-GAACTT   [322]

[                      360       370       380       390       400]
[                      .         .         .         .         .]

Phoronis      TCAAATGTCTGCCCTA-TCAACTTTCGATGGTACGTGACATGCCTACCAT   [328]
Paraspadel    ATAAATGTCTGCCTTA-TCAACTGTCGACGGTAGGTGCCCGGCCTACCGT   [320]
SaggittaW     ATAAATGTCTGCCTTA-TCAACTGTCGACGGTAGGAGCCCGGCCTACCGT   [325]
Artemia       TCAAATGTCTGCCTTA-TCAACTTTCGATGGTAGGCTATGCGCCTACCAT   [350]
Schistosom    TCAAATGTCTGCCCTA-TCAA-TTT-GTTGGTAGGTGATTTGCCTACCAT   [363]
Sagitta_el    ATAAATGTCTGCCTTA-TCAACTGTCGACGGTAGGAGCCCGGCCTACCGT   [345]
Moliniform    TCAAGTGTCTGCCCTA-TCAACTGGCGATGGTAGTTTATGTGCCTACCAT   [310]
Anemonia      TCAAATTTCTGCCCTA-TCAACTGTCGATGGTAAGGTGTTGGCTTACCAT   [348]
Caenorhabd    AAGGGTGTCTGCCCTT-TCAACTA--GATGGTAGTTTATTGGACTACCAT   [330]
Eurypelma     TCAAGTGTCTGCCTTA-TCAACTGTCGATGGTAGGCTTATGCGCCTACCA   [351]
Placopecte    TCAAATGTCTGACCTA-TCAACTTTCGATGGTACGTGCTATGCCTACCAT   [349]
Tenebrio_m    TCAAATGTCTGCCTTA-TCAACTGTCGATGGTAGGTTCTGCGCCTACCAT   [363]
Opisthorch    TCAAATGTCTGCCCTA-TCAATTTTCGATGGTAGGTGACCTGCCTACCAT   [364]
Scypha        ACAAATATCTGCCCTA-TCAACTTTCGATGGTAAGGTAGTGGCTTACCAT   [353]
Chiton        TCAAGTGTCTGCCCTA-TCAACTTTCGATGGTACGTGATATGCCTACCAT   [354]
Snail         TCAAATGTCTGCCCTA-TCAAATGTCGATGGTACGTGACATGCCTACCAT   [377]
Haemonchus    AAAAGTGTCTGCCCTA-TCAACCT--GATGGTAGTCTATTAGTCTACCAT   [326]
Nematodiru    AAAAGTGTCTGCCCTA-TCAACCT--GATGGTAGTCTATTAGTCTACCAT   [326]
Strongyloc    TCGAATGTCTGCCCTAATCAACTTTCGATGGTACGTTATGCGCCTACCAT   [351]
Branchiost    TCGAATGTCTGCCCTA-TCAACTTTCGATGGTAGGTTCTGTGCCTACCAT   [349]
Saccogloss    TCGAGTGTCTGCCCTA-TCAACTTTCGACGGTACGTTATGCGCCTACCGT   [371]

[                      410       420       430       440       450]
[                      .         .         .         .         .]

Phoronis      GGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCAT   [378]
Paraspadel    GGTTATAACGGGTAGCGGGGAATAAGGGTTCTACACCGGAGAGGGAGCAT   [370]
SaggittaW     GGTGATAACGGGTAGCGGGGAATAAGGGTTCTATACCGGAGAGGGAGCAT   [375]
Artemia       GGTTGCAACGGGTAACGGGGAATCGGGGTTCGATTCCGGAGAGGGAGCCT   [400]
Schistosom    GATGATAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCT   [413]
Sagitta_el    GGTGATAACGGGTAGCGGGGAATAAGGGTTCTATACCGGAGAGGGAGCAT   [395]
Moliniform    GGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGAGAGCAT   [360]
Anemonia      GGTTACAACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCT   [398]
Caenorhabd    GGTTGTTACGGGTAACGGAGAATAAGGGTTCGACTCCGGAGAGGGAGCCT   [380]
Eurypelma     TGGTCTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGCAGCCT   [401]
Placopecte    GGTTGTAACGGGTAACGGAGAATCAGGGTTCGGTTCCGGAGAGGGAGCAT   [399]
Tenebrio_m    GGTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCT   [413]
Opisthorch    GGTGATAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCT   [414]
Scypha        GGTTGCAACGGGTAACGGAGAATTAG?GTTCGATTCCGGAGAGGGAGCCT   [403]
Chiton        GGTTGTAACGGGTAACGGAGAATCAGGGTTCGATTCCGGAGAGGGAGCAT   [404]
Snail         GTTTGTAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCAT   [427]
Haemonchus    GGTTATTACGGGTAACGGAGAATAAGGGTTCGACTCCGGAGAGGGAGCCT   [376]
Nematodiru    GGTTATTACGGGTAACGGAGAATAAGGGTTCGACTCCGGAGAGGGAGCCT   [376]
Strongyloc    GGTCGTCACGGGTAACGGAGAATCAGGGTTCGATTCCGTAGAGGGAGCTT   [401]
Branchiost    GGTGGCAACGGGTGACGGGGAATCAGGGTTCGGTTCCGGAGAGGGAGCCT   [399]
Saccogloss    GGTGGCAACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCT   [421]

[                      460       470       480       490       500]
[                      .         .         .         .         .]

Phoronis      GAGAAACGGCTACCACTTCTAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [428]
Paraspadel    GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCACGCAAATTACCCA   [420]
SaggittaW     GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCACGCAAATTACCCA   [425]
Artemia       GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [450]
Schistosom    GAGAAATGGCTACCACATCCAAGGACGGCAGCAGGCGCGAAAATTACCCA   [463]
Sagitta_el    GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCACGCAAATTACCCA   [445]
Moliniform    GAGAAACGGCTATCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [410]
Anemonia      GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [448]
Caenorhabd    TAGAAACGGCTACCACGTCCAAGGAAGGCAGCAGGCGCGAAACTTATCCA   [430]
Eurypelma     GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [451]
Placopecte    GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [449]
Tenebrio_m    GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [463]
Opisthorch    GAGAAACGGCTACCACTTCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [464]
Scypha        GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [453]
Chiton        GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [454]
Snail         GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCA--CAACTTACCCA   [475]
Haemonchus    TAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGAAACTTATCCA   [426]
Nematodiru    TAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGAAACTTATCCA   [426]
Strongyloc    GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [451]
Branchiost    GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [449]
Saccogloss    GAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCA   [471]

[                      510       520       530       540       550]
[                      .         .         .         .         .]

Phoronis      CTCCTGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCTTTC   [478]
Paraspadel    CTCCCGGCACGG--AGGTAGTGACGATCAATAACGATGCGGGACTCTGAC   [468]
SaggittaW     CTCC-GGCACGGGGAGGTAGTGACGATCAATAACGATGCGGGACTCTGAC   [474]
Artemia       CTCCCAGCACGGGGAGGTAGTGACGAAAAATAACGATGCAGGACTCATCC   [500]
Schistosom    CTCCCGGCACGGGGAGGTAGTGACGAAAAATACGGATACGGGACTCAATT   [513]
Sagitta_el    CTCCCGGCACGGGGAGGTAGTGACGATCAATAACGATGCGGGACTCTGAC   [495]
Moliniform    ATCCTAGATCGGGGAGGTAGTGACGAAAAATAACAATGCCGCAGTCGAAT   [460]
Anemonia      ATCCTGACTCAGGGAGGTAGTGACAAGAACTAACAATACAGGGCTTTTGT   [498]
Caenorhabd    CTGTTGAGTA--TGAGATAGTGACTAAAAATATAAAGACTCATCCTTTTG   [478]
Eurypelma     CTCCCGGCACGGGGAGGTAGTGACGAAAAATAACAATACGGGACTCTTTT   [501]
Placopecte    CTCCTGGCACGGGGAGGTAGTGACGAAAAATAACAATACGGGACTCTTTC   [499]
Tenebrio_m    CTCCCGGCACGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCC   [513]
Opisthorch    ATCCCGGCACGGGGAGGTAGTGACGAAAAATACGGATACGGGACTCATTA   [514]
Scypha        ATCCCGACACGGGGAGGTAGTGACGATAAATAACAATGCAGGACTCTAAC   [503]
Chiton        CTCCTGGCACGGGGAGGTAGTGACGAAAAATAACAATACGGGATCTCTTC   [504]
Snail         CTCC-GGCACGGAGGGGTAGTGACGAAAAATAACAATACGGGACTCTTTC   [524]
Haemonchus    ATCTTGAACAGATGAGATAGTGACTAAAAATAAAAAGAC-CATTCCTATG   [475]
Nematodiru    ATCTTGAATAGATGAGATAGTGACTAAAAATAAAAAGAC-CATTCCTATG   [475]
Strongyloc    CTCCCGACACGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC   [501]
Branchiost    CTCCCGACTCGGGGAGGTAGTGACGAAAAATAACAATACGGGACTCTTTC   [499]
Saccogloss    TTCCCGACACGGG-AGGTAGTGACGAAAAATAACGATACGGGACTCTTTG   [520]

[                      560       570       580       590       600]
[                      .         .         .         .         .]

Phoronis      GAGGCCCCGTAATTGGAATGAGTACACTTTAAATCCTTTAACGAGGATCT   [528]
Paraspadel    GAGGCTCCGTAATCGGAATGGGCGTAATTTAAATCCTTCGACGAGGATCA   [518]
SaggittaW     GAGGCTCCGTAATCGGAATGGGCGTAGTTTAAATCCTTCGACGAGGATCA   [524]
Artemia       GAGGCCCTGTGATTGGAATGAGTACACTTTAAATCCTTTAACGAGGATCC   [550]
Schistosom    GAGGCTCCGTAATTCGAATGAGTACAATTTAAATCCTTTAACGAGGACCA   [563]
Sagitta_el    GAGGCTCCGTAATCGGAATGGGCGTAATTTAAATCCTTCGACGAGGATCA   [545]
Moliniform    -AGACTCGGCAATTGGAATGAGTACAATCTAAATCCTTTAACGAGGAACA   [509]
Anemonia      AAGTCTT-GTAATTGGAATGAGTACAACTTAAATCCTTTAACGAGGATCC   [547]
Caenorhabd    GA---TGAGTTATTTCAATGAGTTGAATACAAATGATTCTTCGAGTAGCA   [525]
Eurypelma     GAGACCCCGTAATTGGAATGAGTACACTCTAAATCCTTTAAC-AGGATCT   [550]
Placopecte    GAGGCCCCGTAATTGGAATGAGTACACTTTAAACCCTTTAACGAGTATCC   [549]
Tenebrio_m    GAGGCCCCGTAATCGGAATGAGTACACTCTAAACCCTTTAACGAGGATCA   [563]
Opisthorch    GAGGCTCCGTAATTCGAATGAGTACAATTTAAATCCTTTAACGAGGATCA   [564]
Scypha        GAGTCTT-GCAATTGGAATGAGAACAATTTAAACCCCTTAACGAGGAACA   [552]
Chiton        GAGGCCCCGTAATTGGAATGAGTACACTTTAAATCCTTTAACGAGGATCT   [554]
Snail         GAGGCCCCGTAATTGGAATGAGTACACTTTAAACCCTTTAACGAGGATCT   [574]
Haemonchus    GA---ACGGTCATTTCAATGAGTTGATCATAAACCTTTTTTCGAGGATCA   [522]
Nematodiru    GA---ACGGTCATTTCAATGAGTTGAGCTTAAACCTTTTTTCGAGGATCA   [522]
Strongyloc    GAGGCCCTGTAATTGGAATGAGTACACTTTAAATCCTTTAACGAGGATCC   [551]
Branchiost    GAGGCCCCGTAATTGGAATGGGTACACTTTAAATCCTTTAACGAGGATCT   [549]
Saccogloss    GAGGCCC-GTAATCGGAATGAGCACAGTCCAAATCCTTTAGCGAGGATCC   [569]

[                      610       620       630       640       650]
[                      .         .         .         .         .]

Phoronis      ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [577]
Paraspadel    AGTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACT   [567]
SaggittaW     AGTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACT   [573]
Artemia       ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAAT   [599]
Schistosom    ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAA   [612]
Sagitta_el    AGTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACT   [594]
Moliniform    ATTGGAGGGCAAGTTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCGAAT   [559]
Anemonia      ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [596]
Caenorhabd    AGGAGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCTCCT   [574]
Eurypelma     ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [599]
Placopecte    ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [598]
Tenebrio_m    ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [612]
Opisthorch    ACTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAGA   [613]
Scypha        ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [601]
Chiton        ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [603]
Snail         ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [623]
Haemonchus    AGTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACT   [571]
Nematodiru    AGTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACT   [571]
Strongyloc    ACTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCG-TAATTCCAGCTCCAGT   [599]
Branchiost    ATTGGAGGGCAAGT-CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAAT   [598]
Saccogloss    ATTGGAGGGCAAGT-CTGGTGCCAGCTTGCCGCGTAATTCCAGCTCCAAT   [618]

[                      660       670       680       690       700]
[                      .         .         .         .         .]

Phoronis      AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGG   [627]
Paraspadel    AGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGGATCTCGGG   [617]
SaggittaW     AGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGGATCTCGGG   [623]
Artemia       AGCGTATATTAAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATATGGGT   [649]
Schistosom    AGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTGGGT   [662]
Sagitta_el    AGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTCGGATCTCGGG   [644]
Moliniform    AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATATCAGG   [609]
Anemonia      AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACTTCGGG   [646]
Caenorhabd    AGTGTATCTCGTTATTGCTGCGGTTAAAAAGCTCGTAGTTGGATCTAGGT   [624]
Eurypelma     AGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCAGT   [649]
Placopecte    AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGG   [648]
Tenebrio_m    AGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTCGAATCTGTGT   [662]
Opisthorch    AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTGGGT   [663]
Scypha        AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCGGA   [651]
Chiton        AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGG   [653]
Snail         AGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGG   [673]
Haemonchus    AGTGTAAATCGTCATTGCTGCGGTTAAAAAGCTCGTAGTTGGATCTGAGT   [621]
Nematodiru    AGTGTAAATCGTCATTGCTGCGGTTAAAAAGCTCGTAGTTGGATCTGAGT   [621]
Strongyloc    AGCGTATATTAAAGCTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGG   [649]
Branchiost    AGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTTGGG   [648]
Saccogloss    AGCGTATATTAAAGCTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGT   [668]

[                      710       720       730       740       750]
[                      .         .         .         .         .]

Phoronis      TTTAGGCTAGCGGTCCGCC-------------------------------   [646]
Paraspadel    ATCGTGTCGGGAGTTCCGTGGCGTG-------------------CTCTGC   [648]
SaggittaW     ATCGTGTCG-CGTTCTCGTGGTTTC-------------------TCCTGC   [653]
Artemia       CTCGGTCGGGTGGTGCCGCC------------------------------   [669]
Schistosom    CGTGCGGTCGCATGCCGCTGCTTGT-TCACGGTTTTGGTTACGATCAGGA   [711]
Sagitta_el    ATCGTGTCGGCGTCTTTGTTGCTTC-------------------TTCTGC   [675]
Moliniform    AGATGATTGACGGACTTCTCAATGGAGCAACCGTGTTTTC----------   [649]
Anemonia      GTGGCACGGCCGGTCCGCCG---CAAGTGTGTCACTGGCC----------   [683]
Caenorhabd    TACGTGCCGCAGTTCGCAATT-----------------------------   [645]
Eurypelma     TCCAGACGGGCGGTCCGCC-------------------------------   [668]
Placopecte    TCCAGGCTTGCGGTCCACT-------------------------------   [667]
Tenebrio_m    CCCGCGCCGCCGGTTCATCGTTCGCGGTGTTAACTGGCGT----------   [702]
Opisthorch    CGCATGGCTACATGCCGTTGCTCGTATTCCTGGCCTGGTTCACACCGGGA   [713]
Scypha        GCGGAGCTCACGGTCCGCCTTTTCGGGTGTGCACTGTGCT----------   [691]
Chiton        TTCAGGCTGGAGGTCCGCC-------------------------------   [672]
Snail         CGCAGGCGGGCGGTCCGGC-------------------------------   [692]
Haemonchus    TACATGCAGTGATTCGCCTTT-----------------------------   [642]
Nematodiru    CACATGCAGTGGTTCGCCTTT-----------------------------   [642]
Strongyloc    CCCAGGCCTGCGGTCCGCCGT-----------------------------   [670]
Branchiost    ACCGGGCTTGCGGTCCGCCGC-----------------------------   [669]
Saccogloss    CCGCGGGCGGGCGGAAGTTCTCCGTAC-----------------------   [695]

[                      760       770       780       790       800]
[                      .         .         .         .         .]

Phoronis      ---------------------TCGCGC--GTTACTGCTCGTCCTGACCTA   [673]
Paraspadel    GGCTTACGCCGTTGGGGTGCGTTGCGGGGTCTCGGCCCTGTCGGCGAGGT   [698]
SaggittaW     GGCTCTGCCGTTTGGGAGTTTCCGCGGGTCGTCGGCCCTGCCGGCCTAGG   [703]
Artemia       ---------------------TCACGGTGGTCACTGCCTCGATCGGACAA   [698]
Schistosom    CGTGTTCAGC--TCGGTGTAGTGGCTGTGCAGCCTTTCAGCCGTGTCTGT   [759]
Sagitta_el    G--TTTCGGCGTCGGAGTT-GTGGCAGGTCGTCGGCCCTGTCGGCGAGGT   [722]
Moliniform    --------------------GCTCCTCTTTGTACCGT-------------   [666]
Anemonia      --------------------GGGCCG------------------------   [689]
Caenorhabd    --------------------------------------------------   [645]
Eurypelma     ---------------------TAACGGTGGTTACTGCCTGGCCTGAACAG   [697]
Placopecte    ---------------------CCTTGGTGGCTACTGCTCGTCCTGACCTA   [696]
Tenebrio_m    --------------------GCCGCGGGACGTCCTGCCGGTGGGCTTAGC   [732]
Opisthorch    CGGGTTTGTGAGTCGGTGTCGTGGTTGTGCAGCCTTTCTGCCGTGTCTGT   [763]
Scypha        --------------------GTTCTG------------------------   [697]
Chiton        ---------------------TCGCGGCGGCTACTTCCCGCTCCTGACCT   [701]
Snail         ---------------------TCGCGCCGTTCACTGCCCGTTGTCCTCCT   [721]
Haemonchus    --------------------------------------------------   [642]
Nematodiru    --------------------------------------------------   [642]
Strongyloc    --------------------------------------------------   [670]
Branchiost    --------------------------------------------------   [669]
Saccogloss    --------------------------------------------------   [695]

[                      810       820       830       840       850]
[                      .         .         .         .         .]

Phoronis      CCTCCCGG-TTTT-------------------------------CCCTT-   [690]
Paraspadel    CCTCGGCTGTTGCCGGGGTTCCAACCTTGCTTGTGCAGCCCGCCGTTGCG   [748]
SaggittaW     --TCCCTACCTGATGGCGTTCTCAACTGGCTTCTGCAGCCCGCCGTCGCG   [751]
Artemia       TTCATTGGATCGTT------------------------------------   [712]
Schistosom    GTTAAACGGGTGCTGGTGGGTTGACGAGTTCGTC--TTGTTGACCTGTCG   [807]
Sagitta_el    CC----CACCTTTGGTGGGTTCCACCTCGCTCGTGCAGCCCGCCGTCGCG   [768]
Moliniform    --------------------------------------------------   [666]
Anemonia      ----------CTC-------------------------------TTCTTC   [698]
Caenorhabd    ----------------------------TGCGTCAACTGTGGTCGTGACT   [667]
Eurypelma     CCCAGCCGGTTT--------------------------------CCCTA-   [714]
Placopecte    CCTCCCGGTTTTA-------------------------------CCCTT-   [714]
Tenebrio_m    TCGTGAGGGCGGC-------------------------------CCAACT   [751]
Opisthorch    TTCGACAGGTGTTAGCATGATTGGTGGGTTCGTCCCTGCCTGATCTGTTG   [813]
Scypha        ----------TTC-------------------------------TTCTTC   [706]
Chiton        ACCATCGGGTTTT-------------------------------CCCTT-   [719]
Snail         GCCCTACCGTCTG-------------------------------CCGGCT   [740]
Haemonchus    ----------------------------GGCGTTAATCGCTGTTGTAACT   [664]
Nematodiru    ----------------------------GGCGTTAATCGCTGTTGTGACT   [664]
Strongyloc    ---------------GAGGCGTGT-ACTGCA-GTCCTGGCCTTCCTCTC-   [702]
Branchiost    ---------------GAGGCGTGTCACTGCTCGTCCCGGCCCTCCCCGCC   [704]
Saccogloss    -------------GAGTGGGTCTTCGCTGCCCGTCCCGGAC-TCTCCTCC   [731]

[                      860       870       880       890       900]
[                      .         .         .         .         .]

Phoronis      ----------G--GTGCTCTTGATTGA-GTGTCTCGGGTGGCTGGAACGT   [727]
Paraspadel    TCT-GGACGGGTGCCCTTACC-GGATG-CCCGTTTTTGGACGTGACCCGT   [795]
SaggittaW     TTTTGGGCGGGTGTCCTTATTT------------------CATAGCCCGT   [783]
Artemia       ---------CGGGGTGCTCTTAACCGA-GTGTCCTGGGTGGCCGATACGT   [752]
Schistosom    GCATGCTTCCGGATGCCTTTAAACGGG-T-GTCGGGAGCGGACGGCATCT   [855]
Sagitta_el    TTT-GGGCGGGTGTCCTTAATTGGATG-CCCGCTCTCGAACGTGGCCCGT   [816]
Moliniform    ---TTCATCGTTGATGCACTTTATTGT-GTGTCACGTTTGAACGGCCTTT   [712]
Anemonia      GCAAAGACCGCGTGTGCTCTTGACTGA-GTGTGCGCGGGAGTTGCGACGT   [747]
Caenorhabd    TCTAATTTGCTGGTTTGAGGTTGGGTT-CGCCCTTCAACTGCCAGCAGGT   [716]
Eurypelma     ----------G--ATGATCTTCACCGG-TTGTCCTGGGTGACCGGCACGT   [751]
Placopecte    ----------G--GTGCTCTTGATTGA-GTGTCTCGGGTGGCCGGAACAT   [751]
Tenebrio_m    CAATCCCGCCGCGGTGCTCTTCGTTGA-GTGTCGAGGTGGGCCGGCACGT   [800]
Opisthorch    ACATGCTTCCCAGGTGCCTTAACCGGG-TCGTCGGGGGCGGACGGCACGT   [862]
Scypha        TCGTGGAGCGTGTGTGCTCTTCATTGA-GTGTGCACGTAACTCGGGACTT   [755]
Chiton        ----------G--GTGCTCTTGACTGA-GTGTCTCGGGGGGCCAGAACGT   [756]
Snail         CTCTCCCGCGG--GTGCTCTTCGCTGA-GCGTCC?GGGTGGCCGGCGCGT   [787]
Haemonchus    ATTTGCTGGTTTTCTATTGAGGTTTCG-GCTTCTTTAGTGGCTAGCGAGT   [713]
Nematodiru    ATTTGCTGGTTTTCTATTGAGGTTTCG-ATCTCTTTAGTGGCTAGCGAGT   [713]
Strongyloc    GGTTTTCGCCCG-GTGCCCTTAATTGATGTGCCAGGAGAGGCCGGAACGT   [751]
Branchiost    GGATTCTCCTTG-GTGCTCTTAACTGA-GTGCCTCGGGGTGCCGGAGCGT   [752]
Saccogloss    GGTCCTCTCCCG-GTGCTCTTGGTTGA-GTGTCGGGGGCGGCCGGAACGT   [779]

[                      910       920       930       940       950]
[                      .         .         .         .         .]

Phoronis      TTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGACTCGC---CT-GAA   [773]
Paraspadel    TTACCTTGAACAAATCGGAGTGCTCAAAGCAGGCTCTTCGCTG-CTCGAA   [844]
SaggittaW     TTACCTTGAACAAATCGTAGTGCTCAAAGCAGGCTCTACGCT--CT-GAA   [830]
Artemia       TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGTGCACCGCG-CCT-GAA   [800]
Schistosom    TTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCTGTGC--GCCT-GAA   [902]
Sagitta_el    TTACCTTGAACAAATCGGAGTGCTCAAAGCAGGCTCTTCATCGC-TCGAA   [865]
Moliniform    TTACTTTGAGAAAATTAGCGTGCTTAACGCAGGCGTTACAGC---TTGTA   [759]
Anemonia      TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCAGCGC-----TTGAA   [792]
Caenorhabd    TTACCTTGAATAAATCAGAGTGCTCAATACAAGCGCTTGC-----TTGAA   [761]
Eurypelma     TTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGTGTA---GCCT-GAA   [797]
Placopecte    TTACTTTGAAAAA-TTAGAGTGTTCAAAGCAGGCAAT---TCGCCT-GAA   [796]
Tenebrio_m    TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTAAAACTTCGCCTGAA   [850]
Opisthorch    TTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCCGTGT---GCCTGAA   [909]
Scypha        TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTGGCTT-----GAA   [800]
Chiton        TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCC-G--TCGCCTGAA   [803]
Snail         TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCCAG--CTGCCTGAA   [835]
Haemonchus    TTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTT-----GAA   [758]
Nematodiru    TTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTT-----GAA   [758]
Strongyloc    TTACTTTGAAAAAATTGGAGTGTTCAAAGCA-GCCTCGCGCCT----GAA   [796]
Branchiost    TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTGGCGCCT----GAA   [798]
Saccogloss    TTACTTTGAAGAAATTAGAGTGTTCAAAGCAGGCCGCCACGCCT---GGA   [826]

[                      960       970       980       990       1000]
[                      .         .         .         .         .]

Phoronis      TA--ATGGTGCATGGAATAATGGAATAGGACCTCGGTTCT-ATTTTGTTG   [820]
Paraspadel    -CG-GTAGCGCATGGAATAATGGAAGAGGACC-CGCTTCCCCTTCTGTTG   [891]
SaggittaW     TCGCTATTAGCATGGAATAATGGAAGAGGACCTCGGTCCGCATTCTGTTG   [880]
Artemia       TA--TCACAGCA-GGAATGATGGAATAGGACCTCGGTCTT-ATTATGTTG   [846]
Schistosom    AA--TTCTTGCATGGAATAATGAAATAGGACTTCGGTTCT-ATTTTGTTG   [949]
Sagitta_el    -CG-GTAGCGCATGGAATAATGGAAGAGGACC-GGCTTCCGCTTCTGTTG   [912]
Moliniform    TA--GTGTTGCATGGAATAATGAAATAGGACCTCGGTTCT-GTTTTGTTG   [806]
Anemonia      TA--CATAAGCATGGAATAATGGAATAGGACTTGGGTTCT-ATTTTGTTG   [839]
Caenorhabd    TA--GCTCATCATGGAATAATGAAACAGGACTTCGGTTCT-TTTTGTTGG   [808]
Eurypelma     TA--ATGGTGCATGGAATAATGGAATAGGACTTCGTTTCT-ATTTTGTTG   [844]
Placopecte    TA--ATGGTGCATGGAATAATGGAATAGGACCTCGGTTCT-ATTTTGTTG   [843]
Tenebrio_m    TA-CTGTGTGCATGGAATAATGGAATAGGACCTCGGTTCT-ATTTTGTTG   [898]
Opisthorch    AA--TTCTTGCATGGAATAATGGAATAGGACTTCGGTTCT-ATTTTGTTG   [956]
Scypha        T?--CATTAGCATGGAATAATGAAATAGGACTTTGGTTCT-ATTTTGTTG   [847]
Chiton        TA--ATGGTGCATGGAATAATGGAAGAGGACCTCGGTTCT-ATTTTGTTG   [850]
Snail         TA--ATGGTGCATGGAATAATGGAATAGGACCTCGGTTCT-ATTTTGTTG   [882]
Haemonchus    TG--GTCGATCATGGAATAATAAAAGAGGACTTCGGTTCT-ATTTATTGG   [805]
Nematodiru    TG--GTCGATCATGGAATAATAAAAGAGGACTTCGGTTCT-ATTTATTGG   [805]
Strongyloc    CA--GCAGAGCATGGAATAATGGAATAGGACCTCGGTTCT-ATTGCGTTG   [843]
Branchiost    TA--GTGGTGCATGGAATAATGGAATAGGACCTCGGTTCT-ATTTCGTTG   [845]
Saccogloss    TA--GTCCAGCATGGAATAATGGAATAGGACCTCGGTCC--ATTGCGTTG   [872]

[                      1010      1020      1030      1040      1050]
[                      .         .         .         .         .]

Phoronis      GTTTTCGGAACTT-GAGGTAA-TGATTAATAGGGACGGC-CGGGGGCATT   [867]
Paraspadel    GTCTCAC--GGAAGCAGGTAA-TGATCAAGAGGGACGGA-CGGGGGCAGA   [937]
SaggittaW     GTCTTCCTAGGAGCCAAGTAA-TGATTAAGAGGGACAGTT-GGGGGCATA   [928]
Artemia       GTTTTCTGGACT-TGAGGTAA-TGGT-AACAGAGACAGA-CGGGGGCATT   [892]
Schistosom    GTTTTCGGA--TCCGAAGTAA-TGGTTAAGAGGGACAGA-CGGGGGCATT   [995]
Sagitta_el    GTCTCAC--GGAGGCAGGTAA-TGATCAAGAGGTACGGAT-GGGGGCAGA   [958]
Moliniform    GTTTCCGGAAG-CTGAGGTAA-TGATTAATAGGGACAGA-CGGGG--ATT   [851]
Anemonia      GTTTCTGGAAC-CTGAAGTAA-TGATTAAGAGGGACAGTT-GGGGGCATT   [886]
Caenorhabd    TTCT----AGAACTGATTTAA-TGGTTAAGAGGGACAAACCGGGGGCATT   [853]
Eurypelma     GTTTTCGGAATAC-GAGGTAA-TGATTAAGAGGGACAGA-CGGGGGCATT   [891]
Placopecte    GTTTTCGGAACTT-GAGGTAA-TGATTATGAGGGACAGA-CGGGGGCATT   [890]
Tenebrio_m    GTTTTCGGAATTTTGAGGTAA-TGATTAATAGGAACGGAT-GGGGGCATT   [946]
Opisthorch    GTTTTCGGA--TCCGAAGTAA-TGGTTAAAAGGGACAGA-CGGGGGCATT   [1002]
Scypha        GTTTTCGGAAC--CAAGGTAA-TGAC?AATAGGGACAGTT-GGGGGCATT   [893]
Chiton        GTTTTCGGAAGTC-GAGGTAA-TGATTAAGAGGGACAGA-CGGGGGCATT   [897]
Snail         -TTTTCGGAACTG-GAGGTAA-TGATTAACAGGGACAAA-CGGGGGCATT   [928]
Haemonchus    TTCA--GGAACT--GAAATAA-TGGTTAAGAGGGACAATTCGGGGGCATT   [850]
Nematodiru    TTCA--GGAACT--GAAATAA-TGGTTAAGAGGGACAATTCGGGGGCATT   [850]
Strongyloc    GTTTTCGGAACTC-GAGGTAAGTGATTAAGAGGGACTGA-CGGGGGCATT   [891]
Branchiost    GTTTTCGGAACGT-GAGGTAA-TGATCAAGAGGGACGGA-CGGGGGCATT   [892]
Saccogloss    GTCTTAGGAACGC-GAGGTAA-TGATCGAGAGGGACTGA-CGGGGGCATT   [919]

[                      1060      1070      1080      1090      1100]
[                      .         .         .         .         .]

Phoronis      GCTATTACGGTG-TTAGAGGTGAAATTCTTGGATCGCCGTAAGACGGACA   [916]
Paraspadel    GGTATGGCCCGG-CGAGAGGTGAAATTCTTGGACCCCGGCCAGACCCTCG   [986]
SaggittaW     CGTATGGCTCGG-CGAGAGGTGAAATTCTTGGACCCTAGCCAGACCCTCG   [977]
Artemia       CGTACTGCGACG-CTAGAGGTGAAATTCTTGGACCGT-GCAAGACGAACA   [940]
Schistosom    TGTATGGCGGTG-TTAGAGGTGAAATTCTGGGATCGCCGCCAGACAAACT   [1044]
Sagitta_el    GGTATGGCTCGG-CGAGAGGTGAAATTCTTGGACCCTAGCCAGACCCTCG   [1007]
Moliniform    CGTATTGTGGTG-TTAGAGGTGAAATTCTTGGATCACCGCCAGACGAACA   [900]
Anemonia      CGTATTCG-TTG-TCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACT   [934]
Caenorhabd    CGTATCATTACG-CGAGAGGTGAAATTCGTGGACCGTAGTGAGACGCCCA   [902]
Eurypelma     CGTATTGCGACG-CTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACT   [940]
Placopecte    CGTATTACGGTG-TTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACT   [939]
Tenebrio_m    CGTATTGCGACG-TTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACA   [995]
Opisthorch    TGTATGGCGGTG-TTAGAGGTGAAATTCTTGGATCACCGCCAGACAAACT   [1051]
Scypha        CGTATTCAATTG-TCAGAGGTGAAATTCTTGGATTTATGGAAGACGAACA   [942]
Chiton        CGTATTACGGTG-TTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACT   [946]
Snail         CGTATTGCGGCG-TTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAGCT   [977]
Haemonchus    CGTATCCCTGCG-CGAGAGGTGAAATTCGTGGACCGCAGGGGGACGCCCT   [899]
Nematodiru    CGTATCCCTGCG-CGAGAGGTGAAATTCGTGGACCGCAGGGGGACGCCCT   [899]
Strongyloc    CGTATTGCGGTGGTGAGAGGTGAAATTCTTGGTCGCCGCAG---CGACCG   [938]
Branchiost    CGTATTGCGGCG-GGAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACC   [941]
Saccogloss    CGTATTGCGGCG-TTAGAGGTGAAATTCTTGGATCGTCGCAAGA---ACG   [965]

[                      1110      1120      1130      1140      1150]
[                      .         .         .         .         .]

Phoronis      GCTGCGAAA-CG-TTTGCCAAGAGCGTTTT-CATTAGTCAAGAACGAAAG   [963]
Paraspadel    AGAGCGAAAGCA-TCTGCCAAGGATGTTTC-CATTGATCAAGAACGAAAG   [1034]
SaggittaW     AGAGCGAAAGCA-TCTGCCAAGGATGTTTC-CATTGATCAAGAACGAAAG   [1025]
Artemia       ACTGCGAACAAG-TTTGCCAAGAATGTTTT-CATTAATCAAGAACGAAA-   [987]
Schistosom    ACAGCGAAAGCA-TTTGCCAAGAATGTTTT-CATTGATCAGGAGCGAAAG   [1092]
Sagitta_el    AGAGCGAAAGCA-TCTGCCAAAGATGTTTC-CATTGATCAAGAACGAAAG   [1055]
Moliniform    ACTGCGAAAGCA-TTTGCCAAGAATGTTTT-CATTAATCAAGAACGAAAG   [948]
Anemonia      ACTGCGAAAGCA-TTTGCCAAGAATGTTTT-CATTAATCAAGAACGAAAG   [982]
Caenorhabd    ACAGCGAAAGCA-TTTGCCAAGAATGTCTT-CATTAATCAAGAACGAAAG   [950]
Eurypelma     ACTGCGAAAGCA-TTTGCCAAGAATGTTTT-CATTAATCAAGAACGAAAG   [988]
Placopecte    ACTGCGAAAGCA-TTTGCCAAGAATGTTTT-CATTAATCAAGATCGAAAG   [987]
Tenebrio_m    GAAGCGAAAGCA-TTTGCCAAAAACGCTTT-CATTGATCAAGAACGAAAG   [1043]
Opisthorch    ACAGCGAAAGCA-TTTGCCAAGGATGTTTT-CATTGATCTGGAGCGAAAG   [1099]
Scypha        ACTGCGAAAGCA-TTTGCCAAGGATGTTTT-CATTAATCAAGAACGAAAG   [990]
Chiton        ACTGCGAAAGCA-TTTGCCAAGAATGTTTT-CATTAATCAAGAACGAAAG   [994]
Snail         ACTGCGAAAGCA-TTTGTCAAGAATGTTTT-CATTAATCAAGAACGAAAG   [1025]
Haemonchus    AAAGCGAAAGCA-TTTGCCAAGAATGTCTT-CATTAATCAAGAACGAAAG   [947]
Nematodiru    AAAGCGAAAGCA-TTTGCCAAGAATGTCTT-CATTAATCAAGAACGAAAG   [947]
Strongyloc    AC-GCGAAAGCAATTTGCCAAGAATGTTTTTCATTAATCAAGAACGAAAG   [987]
Branchiost    ACTGCGAAAGCA-TTTGCCAAGAATGTTTT-CATTGATCAAGAACGAAAG   [989]
Saccogloss    ACTGCGAACG---TTTGCCAAGAATGTTTT-CATTGATCAAGAACGAAAG   [1011]

[                      1160      1170      1180      1190      1200]
[                      .         .         .         .         .]

Phoronis      TCAGAGGTTCGAAGACGATCAGATACC--GTCCTAGTTCTGACCATAAAC   [1011]
Paraspadel    TCGCGGGATCGAAGAGGATTAGAGACCCTGACGTAGTCGCGACCGTAAAC   [1084]
SaggittaW     TCGCGGGATCGAACGGGATTAGATACC--CCGGTAGTCGCGACCGTAAAC   [1073]
Artemia       TTAGAGGTTCGAAGGCGATCAGATACC--GCCCTAGTTCTAACCATAAAC   [1035]
Schistosom    TCAGAGTTTCGAAGACGATCAGATACC--GTCGTAGTTCTGACCATAAAC   [1140]
Sagitta_el    TCGCGGGATCGAACGGGATTAGATACC--CCGGTAGTCGCGACCGTAAAC   [1103]
Moliniform    TTAGAGGTTCGAAGACGATTAGATACC--GTCCTAGTTCTAACTATAAAC   [996]
Anemonia      TTAGAGGCTCGAAGACGATCAGATACC--GTCCTAGTTATAACCATAAAC   [1030]
Caenorhabd    TCAGAGGTTCGAAGGCGATTAGATACC--GCCCTAGTTCTGACCGTAAAC   [998]
Eurypelma     TTAGAGGTTCGAAGGCGATCAGATACC--GCCCTAGTTCTAACCATAAAC   [1036]
Placopecte    TCAGAGGTTCGAAGACGATCAGATACC--GTCGTAGTTCTGACCATAAAC   [1035]
Tenebrio_m    TTAGAGGTTCGAAGGCGATCAGATACC--GCCCTAGTTCTAACCATAAAC   [1091]
Opisthorch    TCAGAGGTTCGAAGACGATCAGATACC--GTCCTAGTTCTGACCATAAAC   [1147]
Scypha        TTGGAGGTTCGAAGACGATCAGATACC--GTCGTAGTTCCAACCATAAAC   [1038]
Chiton        TCAGAGGTTCGAAGACGATCAGATACC--GTCGTAGTTCTGACCATAAAC   [1042]
Snail         TCAGAGGCGCGAAGACGATCAGATACC--GTCGTAGTTCTGACCATAAAC   [1073]
Haemonchus    TCAGAGGTTCGAAGGCGATTAGATACC--GCCCTAGTTCTGACCGTAAAC   [995]
Nematodiru    TCAGAGGTTCGAAGGCGATTAGATACC--GCCCTAGTTCTGACCGTAAAC   [995]
Strongyloc    TTAGAGGTTCGAAGGCGATCAGATACC--GCCCTAGTTCTAACCATAAAC   [1035]
Branchiost    TTGTGGGCGCGAAGGCGATCAGATACC--GCCCTAGTCACAACCATAAAC   [1037]
Saccogloss    TCGGAGGTTCGAAGACGATCAGATAC----GTCTAGTTCCGACCGTAAAC   [1057]

[                      1210      1220      1230      1240      1250]
[                      .         .         .         .         .]

Phoronis      GATGCCAACTGAGCATCCGCCGGAGTTGCTTCAATGACTCGGCGAGCAGC   [1061]
Paraspadel    GATGCCAACCGGGAATTTGGCGGCGTTACTTCCATGACCCGTCAAGCGCC   [1134]
SaggittaW     GATGCCAACCGGGAATTCGGCGGCGTTACTTCCATGACCCGTCGAGCGCC   [1123]
Artemia       GATGCCAACCA-CGATCCGCGGACGTTACTTGAATGACTCCGCGGGCAGC   [1084]
Schistosom    AATGCCGACTGATGATCCGCGTTGGTTCTATAATTGACATCGCAGGCAGT   [1190]
Sagitta_el    GATGCCAACCGGGAATTCGGCGGCGTTACTTCCATGACCCGTCGAGCGCC   [1153]
Moliniform    TATGCCAACTGGGGATCCGTCGGTTGCCATTTGTAGGCTCGGCGGGCACC   [1046]
Anemonia      GATGCCGACTAGGGATCAGAGAGTGTTA-TTGGATGACCTCTTTGGCACC   [1079]
Caenorhabd    GATGCCATCTCGCGATTCGGAGG-GTT-----TTTGCCCTGCCGAGGAGC   [1042]
Eurypelma     GATGCCAACCAGCGATCCGCCTGAGTTCCTCAAATGACTCGGCGGGCAGC   [1086]
Placopecte    GATGCCAACTAGCGATCCGCCGGAGTTGCTTCAATGACTCGGCGGGCAGC   [1085]
Tenebrio_m    GATGCCAGCTAGCGATCCGCCGACGTTCCTCCGATGACTCGGCGGGCAGC   [1141]
Opisthorch    GATGCCAACTGACGATCCGTGGTGGCGCGATTATTGGCCCCGCGGGCAGC   [1197]
Scypha        GATGCCGACTAGGGATCGGTGGATGTTA-TTAAATGACTCCATCGGCACC   [1087]
Chiton        GATGCCAACTAGCGATCCGCCGGAGTTGTTTCAATGACTCGGCGGGCAGC   [1092]
Snail         GATGCCGACTAGCGATCCGCAGGAGTTGCTTCGATGACTCTGCGGGCAGC   [1123]
Haemonchus    TATGCCATCTAGCGATCCGATGGGGT---ATAGTTGCCTTGTCGAGGAGC   [1042]
Nematodiru    TATGCCATCTAGCGATCCGATGGGGT---ATATTTGCCTTGTCGAGGAGC   [1042]
Strongyloc    GATGCCGACTGACGATCCGCCGGCGTTACTCCCATGACGCGGC-GGCAGT   [1084]
Branchiost    GATGCCAACCAGCGATCCGCCGGCGTTACTTCGATGACCCGATGGGCAGC   [1087]
Saccogloss    GATGCCGACT--CGATCTGC-GGCGTTACTCTCTAGACCCGGC--GCAGC   [1102]

[                      1260      1270      1280      1290      1300]
[                      .         .         .         .         .]

Phoronis      T-TCCGGGAAACCA--AAGTCTTTGGGTTCCGGGGGAAGTATGGTTGCAA   [1108]
Paraspadel    CGACCCGGGAAACCGAGAGTTTTTGGGTTCCGGGGGGAGTATGGTTGCAA   [1184]
SaggittaW     CGACCCGGGAAACCGAGAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAA   [1173]
Artemia       T-TCCGGGAAACCA--AAGTGTTT-GGTTCCGGGGGAAGTATGGTTGCAA   [1130]
Schistosom    C-CCCGGGAAACCTTTAAGTCTTTGGGCTCCGGGGGGAGTATGGTTGCAA   [1239]
Sagitta_el    CGACCCGGGAAACCGAGAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAA   [1203]
Moliniform    C-TACGGGAAACCA--AAGTGAACAGGTTCCGGGGGGAGTATGGTTGCAA   [1093]
Anemonia      T-TAGGGGAAACCA--AAGTTTTTGGGTTTCGGGGGGAGTATGGTTGCAA   [1126]
Caenorhabd    T-ATCCGGAAACGA--AAGTCTTTCGGTTCCGGGGGTAGTATGGTTGCAA   [1089]
Eurypelma     T-TCCGGGAAACCA--AAGTGTTTGGGTTCCGGGGGAAGTATGGTTGCAA   [1133]
Placopecte    T-TACGGGAAACCA--AAGTTTTTGGGTTCCGGGGGAAGTATGGTTGCAA   [1132]
Tenebrio_m    T-TCCGGGAAACCA--AAGCTTTTGGGTTCCGGGGGAAGTATGGTTGCAA   [1188]
Opisthorch    C-CCCGGGAAACCTTTAAGTCTTTGGGCTCCGGGGGAAGTATGGTTGCAA   [1246]
Scypha        T-TATGAGAAATCA--AAGTTTTTGGGTTCCGGGGGGAGTATAATCGCAA   [1134]
Chiton        T-TCCGGGAAACCA--AAGTTTGTGGGTTCCGGGGGAAGTATGGTTGCAA   [1139]
Snail         T-TCCGGGAAACCA--AAGTTTTTGGGTTCCGGGGGAAGTATGGTTGCAA   [1170]
Haemonchus    T-TCCCGGAAACGA--AAGTCTTTCGGTTCCTGGGGTAGTATGGTTGCAA   [1089]
Nematodiru    T-TCCCGGAAACGA--AAGTCTTTCGGTTCCTGGGGTAGTATGGTTGCAA   [1089]
Strongyloc    C-TAAGGGAAACCA--AAGTCTTTGGGTTCCGGGGGAAGTATGGTTGCAA   [1131]
Branchiost    T-CCCGGGAAACCT--GAGTTTTCGGGTTCCGGGGGAAGTATGGTTGCAA   [1134]
Saccogloss    T--CC-GGAAACCA--AAGTCTTTGGGTTCCGGGGGAAGTATGGTTGCAA   [1147]

[                      1310      1320      1330      1340      1350]
[                      .         .         .         .         .]

Phoronis      AGCCGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCA   [1158]
Paraspadel    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1234]
SaggittaW     AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1223]
Artemia       AGCTGAAACTTAAAGGAATTGACGGAAGGGCACC-CCAGGAGTGGAGCCT   [1179]
Schistosom    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1289]
Sagitta_el    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1253]
Moliniform    AATCGAAACTTAAAGGAATTGACGGAGGGGCAC-ACCAGAAGTGGAGCCT   [1142]
Anemonia      AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1176]
Caenorhabd    AGCTGAAACTTAAAGAAATTGACGGAAGGGCACCACAAGGCGTGGAGCTT   [1139]
Eurypelma     AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1183]
Placopecte    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1182]
Tenebrio_m    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1238]
Opisthorch    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGCAG-T   [1295]
Scypha        GATCGGAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1184]
Chiton        AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1189]
Snail         AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1220]
Haemonchus    AGCTGAAACTTAAAGAAATTGACGGAATGGCACCACCAGGAGTGGAGCCT   [1139]
Nematodiru    AGCTGAAACTTAAAGAAATTGACGGAATGGCACCACCAGGAGTGGAGCCT   [1139]
Strongyloc    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1181]
Branchiost    AGCTGGAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT   [1184]
Saccogloss    AGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTG-AGC-T   [1195]

[                      1360      1370      1380      1390      1400]
[                      .         .         .         .         .]

Phoronis      GCG-CTTAATTTGACTCAACACGGGAAAGCTCACCCGGCCCGGACACTGT   [1207]
Paraspadel    GCG-CTTAATTTGACTCAACACGGGGAACCTCACCCGGCCCGGACACCGC   [1283]
SaggittaW     GCG-CTTAATTTGACTCAACACGGGGAACCTCACCCGGCCCGGACACCGC   [1272]
Artemia       GCGGCTTAATTTGACTCAACACGGGAAACCTCACCAGGCCCGGA-ACTGG   [1228]
Schistosom    GCGGTTTAATTCGACTCAACACGGGAAAACTCACCCGGCCCGGACACTGT   [1339]
Sagitta_el    GCGGCTTAATTTGACTCAACACGGGGAACCTCACCCGGCCCGGACACCGC   [1303]
Moliniform    GCGGCTCAATTTGACTCAACGCACGAAAACTTACCCGGCCCGAACACCGT   [1192]
Anemonia      GCG-CTTAATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACATAGG   [1225]
Caenorhabd    GCGGCTTAATTTGACTCAACACGGGAAAACTCACCCGGTCCGGACACCAT   [1189]
Eurypelma     GCGGCTTAATTTGACTCAACACGGGAAACCTTACCCGGCCCGGACACTGG   [1233]
Placopecte    GCG-CTTAATTTGACTCAACACGGGAAAACTCACCCGGCCCGGACACTGT   [1231]
Tenebrio_m    GCGGCTTAATTTGACTCAACACGGGAAACCTCACCAGGCCCGGACACCGG   [1288]
Opisthorch    GCGGCTTAATTCGACTCAACACGGGAAATCTCACCCGGCCCGGACACTGT   [1345]
Scypha        GCGGCTTAATTTGACTCAACACGGGAAAACTCACCAGGTCCAGACATAGT   [1234]
Chiton        GCG-CTTAATTTGACTCAACACGGGAAAACTCACCCGGCCCGGACACTGT   [1238]
Snail         GCG-CTTAATTTGACTCAACACGGGAAAACTCACCCGGTCCGGACACTGT   [1269]
Haemonchus    GCGGCTTAATTTGACTCAACACGGGAAAACTCACCCGGCCCGGACACCGT   [1189]
Nematodiru    GCGGCTTAATTTGACTCAACACGGGAAAACTCACCCGGCCCGGACACCGT   [1189]
Strongyloc    GCG-CTTAATTTGACTCAACACGGGAAAACTCACCCGGCCCGGACACAGT   [1230]
Branchiost    GCGGCTTAATTTGACTCAACACGGGGAAACTCACCCGGCCCGGACACAGT   [1234]
Saccogloss    GCG-CTTAATTTGACTCAACACGGGAAAACTCACCCGGCCCGGACACGGC   [1244]

[                      1410      1420      1430      1440      1450]
[                      .         .         .         .         .]

Phoronis      AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCA   [1257]
Paraspadel    GAGGATTGACAGACTGAGAGCTCTTTCTCGATTCGGTGGGTGGTGGTGCA   [1333]
SaggittaW     GAG-ATTGACAGACTGAGAGCTCTTTCTCGATTCGGTGGGTGGTGGTGCA   [1321]
Artemia       AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCAGTGGGTGGTGGTGCA   [1278]
Schistosom    GAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCA   [1389]
Sagitta_el    GAGGATTGACAGACTGAGAGCTCTTTCTCGATTCGGTGGGTGGTGGTGCA   [1353]
Moliniform    GAGGATTGACAGATTGACAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCA   [1242]
Anemonia      AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCA   [1275]
Caenorhabd    TAGGACTGACAGATTGAAAGCTCTTTCTCGATTTGGTGGTTGGTGGTGCA   [1239]
Eurypelma     AAGGATTGACAGATTAAGAGCTCTTTCTTGATTCAGTGGGTGGTGGTGCA   [1283]
Placopecte    AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCA   [1281]
Tenebrio_m    AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCA   [1338]
Opisthorch    GAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGTTGGTGGTGCA   [1395]
Scypha        AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCA   [1284]
Chiton        AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCA   [1288]
Snail         AAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCA   [1319]
Haemonchus    AAG-ATTGACAGATTGAAAGCTCTTTCTCGATTTGGTGGTTGGTGGTGCA   [1238]
Nematodiru    AAG-ATTGACAGATTGAAAGCTCTTTCTCGATTTGGTGGTTGGTGGTGCA   [1238]
Strongyloc    GAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTGTGGGTGGTGGTGCA   [1280]
Branchiost    AAGGATTGACAGATTGAGAGCTCTTTCTTGATTCTGTGGGTGGTGGTGCA   [1284]
Saccogloss    GAGGATTGACAGATTGAGAGCTCTTTCTTGATTTGGTGGGTGGTGGTGCA   [1294]

[                      1460      1470      1480      1490      1500]
[                      .         .         .         .         .]

Phoronis      TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1307]
Paraspadel    TGGCCGTTCTTAGTTGGTGGAGCGATCTGTCTGGTTAATTCCGATAACGA   [1383]
SaggittaW     TGGCCGTTCTTAGTTGGTGGAGCGATCTGTCTGGTTAATTCCGATAACGA   [1371]
Artemia       TGGC-GTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1327]
Schistosom    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1439]
Sagitta_el    TGGCCGTTCTTAGTTGGTGGA-CGATCTGTCTGGTTAATTCCGATAACGA   [1402]
Moliniform    TGGCCGTTCGTAGTTGGTGGAGCGATTTGTCTGGTTTATTCCGATAACGA   [1292]
Anemonia      TGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGA   [1325]
Caenorhabd    TGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTTATTCCGATAACGA   [1289]
Eurypelma     TGGCCGTTCATAGTTGGTGGAGCGATTTGTCTGGTTTATTCCGATAACGA   [1333]
Placopecte    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1331]
Tenebrio_m    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1388]
Opisthorch    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1445]
Scypha        TGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGTTAACGA   [1334]
Chiton        TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1338]
Snail         TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1369]
Haemonchus    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTTATTCCGATAACGA   [1288]
Nematodiru    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTTATTCCGATAACGA   [1288]
Strongyloc    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA   [1330]
Branchiost    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGCTAATCCCGATAACGA   [1334]
Saccogloss    TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCAGGTTGATTCCGATAACGA   [1344]

[                      1510      1520      1530      1540      1550]
[                      .         .         .         .         .]

Phoronis      ACGAGACTCTAGCCTGCTAAATAGTT------------------------   [1333]
Paraspadel    ACGAGACCCCGACCTGCTAACTAGCCCTCGGGTCC---------------   [1418]
SaggittaW     ACGAGACCCCAACCTGCTAACTAGCCCTCGGGTCT---------------   [1406]
Artemia       ACGAGACTCTAGCC-GCTAAATAGACGATGGATCCTA-------------   [1363]
Schistosom    ACGAGACTTTAACCTGCTAAATAGTAGACTGGTCCTCTGTGCTCGTTTAG   [1489]
Sagitta_el    ACGAGACCCCAACCTGCTAACTAGCCCTCGGGTCC---------------   [1437]
Moliniform    ACGAGACTCTAGCCTATTAATTAGG-------------------------   [1317]
Anemonia      ACGAGACCTTAACCTGCTAAATAG--------------------------   [1349]
Caenorhabd    GCGAGACTCTAGCCTGCTAAATAGTTGGCGAATCTTC-------------   [1326]
Eurypelma     ACGAGACTCTAGCCTACTAAATAGGC------------------------   [1359]
Placopecte    ACGAGACTCTAGCCTGCTAAATAGTT------------------------   [1357]
Tenebrio_m    ACGAGACTCTAGCCTGCTAAATAGGCGTATTTCGACATCCCAAAG-----   [1433]
Opisthorch    ACGAGACTTTGGCCTGCTAAATAGTACGCCTGTCCTCTGTGCTCGTGCAG   [1495]
Scypha        ACGAGACCTTAACCTGCTAAATAG--------------------------   [1358]
Chiton        ACGAGACTCTAGCCTATTAAATAGTT------------------------   [1364]
Snail         ACGAGACTCTAGCCTATTAAATAGTT------------------------   [1395]
Haemonchus    GCGAGACTCTAGCCTGCTAAATAGTGGCTGGATTTTT-------------   [1325]
Nematodiru    GCGAGACTCTAGCCTGCTAAATAGTGCCTGGATTTTT-------------   [1325]
Strongyloc    ACGAGACTCTGGCTTGCTAAATAGTTGCGCCACCCCG-------------   [1367]
Branchiost    ACGAGACTCTGGCATGCTAACTAGTTGCGGCGATCCCG------------   [1372]
Saccogloss    ACGAGACTCTGGCTTGCTAAATAGTCGTG-CGACCCT-------------   [1380]

[                      1560      1570      1580      1590      1600]
[                      .         .         .         .         .]

Phoronis      --------CACCGGTCCCGA--TGTGCCGGTGC-----------------   [1356]
Paraspadel    ------------------------------------GGCTTCT---GGCG   [1429]
SaggittaW     ------------------------------------AGCTTCTCCTGCCG   [1420]
Artemia       --------------------------------------------------   [1363]
Schistosom    GGCGCGGCTTCTATTGCTTCTTTATGGAGTAGTGTGGTCGTGATCCGGCG   [1539]
Sagitta_el    ------------------------------------TGCTTCT---GTTG   [1448]
Moliniform    ---------------------------------------GTGCCGATTCA   [1328]
Anemonia      -------------------------------------------TTACGCC   [1356]
Caenorhabd    --------------------------------------------------   [1326]
Eurypelma     --------GTCCCGATCAC--TTCTGTCGGGCG-----------------   [1382]
Placopecte    --------CACCGATCCGCTCTGCGTCGGTGC------------------   [1381]
Tenebrio_m    -----GCCCGCTGGTCCCGGGTTCGCTCGGTGACCGTGCGCGGTTTTTAC   [1478]
Opisthorch    GTGGCGGTGCTCATTGCCTCTC--TGGGGTGATGGTGCCGTTCGCCGGCG   [1543]
Scypha        -------------------------------------------TTACGCG   [1365]
Chiton        --------CGCCGATCCCTGATGCGTCGGCGCC-----------------   [1389]
Snail         --------CGCCGGTTCCTCGATCGCCGGCGC------------------   [1419]
Haemonchus    --------------------------------------------------   [1325]
Nematodiru    --------------------------------------------------   [1325]
Strongyloc    --------------------------------------------------   [1367]
Branchiost    --------------------------------------------------   [1372]
Saccogloss    -------------------------------------------------T   [1381]

[                      1610      1620      1630      1640      1650]
[                      .         .         .         .         .]

Phoronis      -----------------AACTTCTTAGAGG-ACAAGCGCG--ATAGCCGC   [1386]
Paraspadel    GGCCCGACGGAATTATTCGCTTCTTAGAGGGACTCGCGGCGCCTAGCCGC   [1479]
SaggittaW     GGCCCGACGAACTGATTCGCTTCTTAGAGGGACTGCGCGGCCCTAGCCGC   [1470]
Artemia       ------GTGGTGGATCGCTCTTCTTAGAGGGACAAGTGGCGT-CAGCC--   [1404]
Schistosom    GGTGCGGTGCCAGTTTTTACTTCTTAGAGGGACAAGCGGCACACTTAAGT   [1589]
Sagitta_el    GGCCCGACGGAATGATTCGCTTCTTAGAGGGACTCGCGGCGC-TAGCCGC   [1497]
Moliniform    ATTAGTCGGCATTGTTAAACTTCTTAGAGG-ACAGGTGCTTCTTAAGCAC   [1377]
Anemonia      CATCGCGATGGGCAACTAACTTCTTAGAGGGACTGTTGGTGTTTAACCAA   [1406]
Caenorhabd    -------GGGTTCGTATAACTTCTTAGAGGGATAAGCGGTGTTTAGCCGC   [1369]
Eurypelma     -----------------TTCTTCTTAGAGGGACAAATGGCGTTTAGCCGC   [1415]
Placopecte    -----------------AACTTCTTAGAGGGACAAGTGGCGTTTAGCCAC   [1414]
Tenebrio_m    TGTCGGCGTACAAACAATTCTTCTTAGAGGGACAGGCGGCTTCTAGCCGA   [1528]
Opisthorch    GGTGCGGC-CAGGTGTCTACTTCTTAGAGGGACAAGCGGCGTGC--CAGT   [1590]
Scypha        ATTCTCGAATCGCGGCCAACTTCTTAGAGGGACTATTGGTGTTTAACCGA   [1415]
Chiton        -----------------AACTTCTTAGAGGGACAAGTGGCGTTTAGCCAC   [1422]
Snail         -----------------AACTTCTTAGAGGGACGAGTGGCGTTTAGCCA-   [1451]
Haemonchus    -------GAGTCCAGTCTACTTCTTAGAGGGATAAGCGGTGTTTAGCCGC   [1368]
Nematodiru    -------ACGTCCAGTCTACTTCTTAGAGGGATAAGCGGTGTTTAGCCGC   [1368]
Strongyloc    ------CGGTGCGCGTCAACTTCTTAGAGGGACAAGTGGCGTTTAG-AG-   [1409]
Branchiost    ----CGCGATCGGCCGCAACTTCTTAGAGGGACAGCCGGCAGTAAGCCGG   [1418]
Saccogloss    AACGTTGTCGGCGACCGAACTTCTTAGAGGGACAAGCGGCGTTCCCGAG-   [1430]

[                      1660      1670      1680      1690      1700]
[                      .         .         .         .         .]

Phoronis      ACGA--GA-TTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGG   [1433]
Paraspadel    ACAAGGGG---GGGCGATAACAGGTCTGTGATGCCCTTAGATGTTCGGGG   [1526]
SaggittaW     ACGAAGGG---GGGCGATAACAGGTCTGTGATGCCCTTAGATGTTCGGGG   [1517]
Artemia       -ATATGAGAGTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGG   [1453]
Schistosom    CGCACGAAATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1639]
Sagitta_el    ACGAAGGG---GGG-GATAACAGGTCTGTGATGCCCTTAGATGTTCGGGG   [1543]
Moliniform    ACGAAGA---GGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGG   [1424]
Anemonia      AGTCAGGA---AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGG   [1453]
Caenorhabd    ACGA---GATTGAGCGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1416]
Eurypelma     ACGA--GA-CAGAGCAATAACAGGTCTGAGATGCCCTTAGATGTCCGGGG   [1462]
Placopecte    ACGA--GA-TTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTAGGGG   [1461]
Tenebrio_m    ACGA--GA-TTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGG   [1575]
Opisthorch    CGCACGAAATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1640]
Scypha        TGGAAGTT-TGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGG   [1464]
Chiton        ACGA--AA-TTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGG   [1469]
Snail         ACGA--GA-TTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1498]
Haemonchus    ACGA---GATTGAGCGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1415]
Nematodiru    ACGA---GATTGAGCGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1415]
Strongyloc    --------ATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCGGGG   [1451]
Branchiost    ACGAG---ATGGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1465]
Saccogloss    --------ATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGG   [1472]

[                      1710      1720      1730      1740      1750]
[                      .         .         .         .         .]

Phoronis      CCGCACGTGCGCTACACTGAAGGGATCAGGCGTGCG------TC-TACCC   [1476]
Paraspadel    CTGCACGCGCGCTACACTGAAGGCATCAG-CGTGCGCTTTGTCCGTTCCC   [1575]
SaggittaW     CTGCACGCGCGCTACACTGAAGGCATCAG--GTGCGCTTTGTCGGTTCCC   [1565]
Artemia       CCGCAC-CGCGCTACACTGGAAGAATCAG-CGCGTC---------CTCCC   [1492]
Schistosom    CCACACGTGCGCTACAATGACGGTGCCAG-CGAGTCT-----GGGAACCT   [1683]
Sagitta_el    CTGCACGCGCGCTACACTGAAGGCATCAG-CG?GCGCTTTGTCCGTTCCC   [1592]
Moliniform    CTGCACGCGCGCTACAATGGAGGGCTCAG-AAAGCGT-----AA-CGATT   [1467]
Anemonia      CCGCACGCGCGCTACACTGACGATGTCAA-CGAGT-------CT-CTCCT   [1494]
Caenorhabd    CTGCACGCGTGCTACACTGGTGGAGTCAG-CGGGTTT--------TTCCT   [1457]
Eurypelma     CCGCACGCGCGCTACACTGAAGGAATCAG-CGTGTGC-----TT-TCCCT   [1505]
Placopecte    CCGCACGCGCGCTACACTGAAGGAATCAA-CGTGCTC-----TT-ATCCT   [1504]
Tenebrio_m    CCGCACGCGCGCTACACTGAAGGAATCAG-CGTG--------TC-CTCCC   [1615]
Opisthorch    CCGCACGTGCGCTACAATGACGGTTTCAA-CGAGTTT-----GGGATCCT   [1684]
Scypha        CCGCACGCGCGCTACACTGATGAAGTCAG-CGAGT-------TC-TTCCT   [1505]
Chiton        CCGCACGCGCGCTACACTGAAGGAATCAG-CGTGTGT-----CG-TTCCT   [1512]
Snail         CCGCACACACGCTACACTGAAGGAATCAG-CGTGGAT-----GC-CTCCC   [1541]
Haemonchus    CTGCACGCGCGCTACAATGGAAGAATCAG-CTGGCCT--------ATCCA   [1456]
Nematodiru    CTGCACGCGCGCTACAATGGAAGAATCAG-CTGGCCT--------ATCCA   [1456]
Strongyloc    CCGCACGCGCCGTACACTGGCGGAATCCA-GCGGGTA----CACTGCCCT   [1496]
Branchiost    CCGCACGCGCGCTACAATGAAGGCATCAG-CGAGTCT------TTCGCCT   [1508]
Saccogloss    CCACGCGCGCG-TACACTGAAGGGATCAG-CGGGTGT-----CGCCTCCC   [1515]

[                      1760      1770      1780      1790      1800]
[                      .         .         .         .         .]

Phoronis      TGGCCTGGAAGGTT-GGGTAACCCGTTGAACCCCCTTCGTGCTAGGGATT   [1525]
Paraspadel    TGCCTGAAAAGGCC-GGGTAACCCGCTGAACCGCCTTCGTGCCTGGGATA   [1624]
SaggittaW     TGCCTGAAAAGGCT-GGGTAACCCGCTGAACCGCCTTCGTGCCTGGGATA   [1614]
Artemia       TGTCCGAGAGGACC-GGGTAACC-GCT-GACCTCTTCCGTGGTTGGGATT   [1539]
Schistosom    GGCCCGAAAGGGTT-GGGCAAACTGTTTCATCACCGTCGTGACTGGGATC   [1732]
Sagitta_el    TGCCTGAAAAGGCT-GGGTAACCCGCTGAACCGCCTTCGTGCCTGGGATA   [1641]
Moliniform    TCGACAGAAATCGG-CAATCA-----TAAATAGCCTTCTTGATTGGGATC   [1511]
Anemonia      TGGCCGAAAGGTCT-GGGTAATCTTCTCAAACATCGTCGTGCTGGGGATA   [1543]
Caenorhabd    ATGCCGAAAGGTATC-GGTAAACCGTTGAAATTCTTCCATGTCCGGGATA   [1506]
Eurypelma     -GTCCGGTAGGACT-GGGTAACCCGTTCAACCTCCTTCGTGATAGGGATA   [1553]
Placopecte    TGCCCGGAAGGGTT-GGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATT   [1553]
Tenebrio_m    TGGCCGAGCGGCCC-GGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATT   [1664]
Opisthorch    AGCCCGAAAGGTTT-GGGTAAACTGAACCATAACCGTCGTGACTGGGATC   [1733]
Scypha        TCACCGATAGGTGT-GGGTAATCTTGTGAAACTTCATCGTGCTGGGGATA   [1554]
Chiton        GGCCCGGAAGGGCT-GGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATT   [1561]
Snail         TGGCCCGAAAGGTT-GGGAAACCCGTTGAATCTCCTTCGTGCTAGGGATT   [1590]
Haemonchus    TTGCCGAAAGGCATT-GGTAAACCGTTGAAACTCTTCCGTGACCGGGATA   [1505]
Nematodiru    TTACCGAAAGGTATT-GGTAAACCGTTGAAACTCTTCCGTGACCGGGATA   [1505]
Strongyloc    TGGCCGGAAGGTCT-GGGTAATCCGCTGAACCTCCTCCGTGATGGGGATA   [1545]
Branchiost    TCGCCGAAAGGTGC-GGGTAACCTGCTGAACCGCCTTCGTGCTAGGGATC   [1557]
Saccogloss    TGGCCGACAGGACCCAGGCAATCCGATGAGCCCCCTTCGTGCTAGGGATA   [1565]

[                      1810      1820      1830      1840      1850]
[                      .         .         .         .         .]

Phoronis      GGGGCTTGTAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGT   [1575]
Paraspadel    GGGATTTGCAATTATCTCCCTTGAACGAGGAATTCCCAGTAGGCGCGAGT   [1674]
SaggittaW     GGGATTTGCAATTATCTCCCTTGAACGAGGAATTCCCAGTAGGCGCGAGT   [1664]
Artemia       GGGGACTGCAAGGAT-CCCCATGAACCAGGAATCCCTAG-AGGCGCAAGT   [1587]
Schistosom    GGGGCTTGCAATTATTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGT   [1782]
Sagitta_el    GGGATTTGCAATTATCTCCCTTGAACGAGGAATTCCCAGTAGGCGCGAGT   [1691]
Moliniform    GGAGATTGTAATTATTCTTCGTCAACGAGGAATTCCTAGTAAACGCGAAT   [1561]
Anemonia      GATCATTGCAATTTTTGATCTTGAACGAGGAATTCCTAGTAAGCGCGAGT   [1593]
Caenorhabd    GGGTATTGTAATTATTGCCCTTAAACGAGGAATGCCTAGTAAGTGTGAGT   [1556]
Eurypelma     GGGGCTTGTAATTGTTCCCCTTGAACGAGGAATTCCCAGTAAGCACGAGT   [1603]
Placopecte    GGGGCTTGTAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGT   [1603]
Tenebrio_m    GGGGCTTGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGT   [1714]
Opisthorch    GGGGCTTGCAATTGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGT   [1783]
Scypha        GACCATTGCAATTATTGGTCTTCAACGAGGAATTCCTAGTAAGCGCAAGT   [1604]
Chiton        GGGGCTTGTAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGT   [1611]
Snail         GGGGCTTGTAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGAGAGT   [1640]
Haemonchus    GGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGT   [1555]
Nematodiru    GGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGT   [1555]
Strongyloc    GGGAGTTGCAATTATCTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGT   [1595]
Branchiost    GGGGATTGCAATTATCTCCCATGAACGAGGAATTCCCAGTAGATGCGTGT   [1607]
Saccogloss    GGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCCAGTAGGCGCGAGT   [1615]

[                      1860      1870      1880      1890      1900]
[                      .         .         .         .         .]

Phoronis      CATAAGCTCCGGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1625]
Paraspadel    CATCAGCTCGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1724]
SaggittaW     CATCAGCTCGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1714]
Artemia       CATTAGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC-   [1636]
Schistosom    CATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1832]
Sagitta_el    CATCAGC?CGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1741]
Moliniform    CGTTATTTCGTGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1611]
Anemonia      CATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1643]
Caenorhabd    CATCAGCTCACGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1606]
Eurypelma     CATAAGCTCGTGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1653]
Placopecte    CATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1653]
Tenebrio_m    CATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1764]
Opisthorch    CATAAGCTTGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1833]
Scypha        CATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1654]
Chiton        CATAAGCTCG?GTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1661]
Snail         CATAAG?TCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1690]
Haemonchus    CATCAGCTCACGCTGATTACGTCCCTGCCATTTGTACACACCGCCCGTCG   [1605]
Nematodiru    CATCAGCTCACGCTGATTACGTCCCTGCCATTTGTACACACCGCCCGTCG   [1605]
Strongyloc    CATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1645]
Branchiost    CATCAGCGCGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1657]
Saccogloss    CATAAGCTCGTGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCG   [1665]

[                      1910      1920      1930      1940      1950]
[                      .         .         .         .         .]

Phoronis      CTA-CTACCGATTGAACGGTTTAGTGAGAGCCTCGGATTGGTCCTG-CAT   [1673]
Paraspadel    CTA-CTACCGATCGAACGATGTAGTGAGGTCCTCGGACTGGCCACTACTC   [1773]
SaggittaW     CTA-CTACCGATCGAACGATGTAGTGAGGTCCTCGGACTGGCGACTACTC   [1763]
Artemia       CTA-CTACCGATTGAATGATTTAGTGAGAACTTCGGACGACTCGCCAGGG   [1685]
Schistosom    CTA-CTACCGATTGAATGGTTTAGTGAGGTCGTTGGATTGGTGTCGTTGT   [1881]
Sagitta_el    CTA-CTACCGATCGAACGATGTAGTGAGGTCCTCGGACTGGCATGTACTC   [1790]
Moliniform    CTA-CTACCGATTGAATGGCTTAGTGAGGTCTACGGATAGGCTACAAGGT   [1660]
Anemonia      CTA-CTACCGATTGAATGGTTTAGTGAGGACTCCTGATTGGCGCCGCGCC   [1692]
Caenorhabd    CTA-TCCGGGACTGAACTGATTCGAGAAGAGTGGGGACTGTC--------   [1647]
Eurypelma     CTA-CTACCGATTGAATGATTTAGTGAGGTCTTCGGATTGGCGCTCGGAG   [1702]
Placopecte    CTACCTACCGATTGATTGGTTTGGTGAGCTCCTCGGATTGGTCCCGACAC   [1703]
Tenebrio_m    CTA-CTACCGATTGAATGATTTAGTGAGGTCTTCGGACCGGTACGCGGTG   [1813]
Opisthorch    CTA-CTACCGATTGAATGGTTTAGCAAGGTCCTCGGATTGGTGCCATTGT   [1882]
Scypha        CTA-CTACCGATTGAATGGTTTAGTGAGATCTTCGGATTGCTGGCCCGGC   [1703]
Chiton        CTA-CTACCGATTGAATGGTTTAGTGAGAGCCCCGGATTGGTCCCGGCAT   [1710]
Snail         CTA-CTATCGATTGAGCGGTTCAGTGAGGGCCTCGGATTGGTCTCGGTCT   [1739]
Haemonchus    CTG-TCCGGGACTGAGCTGTCTCGAGAGGACTGCGGACTGCT--------   [1646]
Nematodiru    CTG-TCCGGGACTGAGCTGTCTCGAGAGGACTGCGGACTGCT--------   [1646]
Strongyloc    CTA-CTACCGATTGAATGGTTTAGTGAGATCCTCGGATCGTC--------   [1686]
Branchiost    CTA-CTACCGATTGAATGGTTTAGTGAGGTCAGTCGATCGGC--------   [1698]
Saccogloss    CTA-CTACCGATTGAACGGTTTAGTGAGATCTTCGGATCGC---------   [1705]

[                      1960      1970      1980      1990      2000]
[                      .         .         .         .         .]

Phoronis      GGTGGGCAACCATCGCGCCGGTGTGC---------CGAGAAGC---TGCT   [1711]
Paraspadel    GGAACCCCGC--TCCGGTGGGGAGAAGAGCTTGCTTGCCGGGAAGAGGAT   [1821]
SaggittaW     GGAAGCCGGGCTTCGGTCTGGTAGAAGAGCTTGTTTGCCGGGAAGAGCAT   [1813]
Artemia       CAGCTCCGGGCGCT----CGTGGTGT---------GGTTGAAAGGTTGTT   [1722]
Schistosom    AGTGG---CGTTGCC-GCTCGACTGA---------TGCTGAGAAGATGAC   [1918]
Sagitta_el    GGAAGCCGGG--TTCGCTCGGTAGAAGAGCTTGTTTGCCGGGAAGAGAAC   [1838]
Moliniform    AGCCATCAGCTCT------GTTGTAT---------TACCTAAAAGTTGGC   [1695]
Anemonia      CCG------GCCACGGAGCAGCGGAC---------TGCCGAGAAGTTGTT   [1727]
Caenorhabd    -GCTTCGAGGTTTAACGACTTCGTTG---------TTGCGGAAACCATTT   [1687]
Eurypelma     CGGCCGCAAGG-TCGCGCCGGCGTGC---------CGGAAAGCGATTGAC   [1742]
Placopecte    GGGGGGCAACCCTCGAGTCGGTGCGC---------CG---AGAAGACGAG   [1741]
Tenebrio_m    GCGTTTCGGCGTCGCCGATGTTGCTG---------GG-----AAGATGAC   [1849]
Opisthorch    AGTTG---CTTCGGCAGCTCGACCGG---------TGCTGAAAAGACGAC   [1920]
Scypha        GGC------CTTGTGTTGCCGGACAC---------AGC-GAGAAGTTGAT   [1737]
Chiton        GGGGG?AACCTCC---GCCGGTGCGC---------CG---AGAAGTTGTT   [1745]
Snail         GGTACGCAAGTGCTGGCACCGCTGGC---------CG---AGAAGAAGCT   [1777]
Haemonchus    -GTATCGAGGCCTTCGGGTCGCGGTA---------TGGCGGGAAACAGTT   [1686]
Nematodiru    -GTATCGAGGCTTTCGGGTCGCGGTA---------TGGCGGGAAACAGTT   [1686]
Strongyloc    -GGCGTCGGGCTTGCGCCTCGCTCGCA-------TGTACGAGAAGACGAT   [1728]
Branchiost    CCCTCTCGGGCCGGCAACGGTCTGGAG-----GAGCGCCGAGAAGCCGAT   [1743]
Saccogloss    ACGCGCGGGGACTGGTTCTCGGCCCTCG----TGTGTCCGAGAAGACGAT   [1751]

[                      2010      2020      2030      2040      2050]
[                      .         .         .         .         .]

Phoronis      CAAACTTGATCGTTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGT---   [1758]
Paraspadel    CAAACTGTATCGTTT-----------------------------------   [1836]
SaggittaW     CAAACTG-------------------------------------------   [1820]
Artemia       CAAACTTGATCCTTTAGAGGAAGTAAAAGTCG-AACAAGGTTTCCGTAGG   [1771]
Schistosom    CTAATTTGACTATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1968]
Sagitta_el    CAAACTGAATCGTTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1888]
Moliniform    CGAACTTTACCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1745]
Anemonia      CAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1777]
Caenorhabd    TTATCGCATTGGTTTGAACCGGGTAAAAGTCGTAACAAGGTAGCTGTAGG   [1737]
Eurypelma     CAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1792]
Placopecte    CAAACTTGATTATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1791]
Tenebrio_m    CAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1899]
Opisthorch    CAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1970]
Scypha        CAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1787]
Chiton        CGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1795]
Snail         CGAACTCGATCGCTTGGAGAAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1827]
Haemonchus    CAATCGCAATGGCTTGAACCGGGTAAAAGTCGTAACAAGGTATCTGTAGG   [1736]
Nematodiru    CAATCGCAATGGCTTGAACCGGGTAAAAGTCGTAACAAGGTATCTGTAGG   [1736]
Strongyloc    CAAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG   [1778]
Branchiost    CAAACTTGACCATTTAGAGGAAGTAAAAGTCGT-----------------   [1776]
Saccogloss    CGAACTTGATCGTTTAGAGGAAGTAAAAGTCGTAACAAGGTTTC-GTAGG   [1800]

[                      2060      2070]
[                      .         .  ]

Phoronis      ----------------------   [1758]
Paraspadel    ----------------------   [1836]
SaggittaW     ----------------------   [1820]
Artemia       TGAACCTGCGGAAGGATCATTA   [1793]
Schistosom    TGAA------------------   [1972]
Sagitta_el    TGAACCTGCGGAAGGATCATTA   [1910]
Moliniform    TGAACCTGCGGAAGGATCATTA   [1767]
Anemonia      TGAACCTGCGGAAGGATCATTA   [1799]
Caenorhabd    TGAACCTGCAGCTGGATCATCG   [1759]
Eurypelma     TGAACCTGCGGAAGGATCATTA   [1814]
Placopecte    TGAACCTGCAGAAGGATCAAGC   [1813]
Tenebrio_m    TGAACCTGCGGAAGGATCATTA   [1921]
Opisthorch    TGAACCTGCGGAAGGATCATTG   [1992]
Scypha        TGAACCTGCAGAAGGATCA---   [1806]
Chiton        TGAACCTGCGGAAGGATCA---   [1814]
Snail         TGAACCTGCGGAAGGATCA---   [1846]
Haemonchus    TGAACCTGCAGATGGATCATCG   [1758]
Nematodiru    TGAACCTGCAGATGGATCATCG   [1758]
Strongyloc    TGAACCTGCAGAAGGATC----   [1796]
Branchiost    ----------------------   [1776]
Saccogloss    TGAACCTGCAGATGGATC----   [1818]
;
END;


BEGIN CODONS;
GENCODE UNIVNUC
;
END;

BEGIN ASSUMPTIONS;


	USERTYPE 2_1 STEPMATRIX = 4
	     A C G T
	 [A] . 2 1 2
	 [C] 2 . 2 1
	 [G] 1 2 . 2
	 [T] 2 1 2 .
	;

	USERTYPE 1.2_1 STEPMATRIX = 4
	     A C G T
	 [A] . 6 5 6
	 [C] 6 . 6 5
	 [G] 5 6 . 6
	 [T] 6 5 6 .
	;

	USERTYPE 3_1 STEPMATRIX = 4
	     A C G T
	 [A] . 3 1 3
	 [C] 3 . 3 1
	 [G] 1 3 . 3
	 [T] 3 1 3 .
	;

	USERTYPE 1_0 STEPMATRIX = 4
	     A C G T
	 [A] . 1 0 1
	 [C] 1 . 1 0
	 [G] 0 1 . 1
	 [T] 1 0 1 .
	;

	USERTYPE 10_1 STEPMATRIX = 4
	     A C G T
	 [A] . 10 1 10
	 [C] 10 . 10 1
	 [G] 1 10 . 10
	 [T] 10 1 10 .
	;

	USERTYPE 100_1 STEPMATRIX = 4
	     A C G T
	 [A] . 100 1 100
	 [C] 100 . 100 1
	 [G] 1 100 . 100
	 [T] 100 1 100 .
	;

	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;

	EXSET * ambiguous  =  71-84 130-155 191-290 310-337 554-558 700-899 935-959 1005-1014 1178-1181 1228-1235 1525-1618 1639-1663 1729-1747 1941-2000;

END; 
begin paup;
	outgroup Anemonia Scypha ;
	constraints onethree = (((Paraspadel,
SaggittaW, Sagitta_el),( Caenorhabd, Haemonchus, Nematodiru)));
	constraints Nielsen = (((Paraspadel,
SaggittaW, Sagitta_el),Moliniform));
	constraints Casanova = (((Paraspadel,
SaggittaW, Sagitta_el),(Placopecte, Snail, Chiton)));
	constraints Deutero = (((Paraspadel,
SaggittaW, Sagitta_el),(Strongyloc, Branchiost,Saccogloss)));
	end;


BEGIN MACCLADE;
v 3.0
-1402512304
1000&/0
0
0
END;