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From Phycas
New version 1.1 posted February 11, 2009
Phycas is a Python application for carrying out phylogenetic analyses. Phycas is also a C++ and Python library that can be used to create new applications or to extend the current functionality.
Phycas version 1.1 can be downloaded for Windows or Mac on the Download page. (Linux versions are available but must be compiled from the C++ sources.)