Difference between revisions of "Phycas Home"

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'''Phycas''' is a Python extension for carrying out Bayesian phylogenetic analyses.  
 
'''Phycas''' is a Python extension for carrying out Bayesian phylogenetic analyses.  
 
<!-- The current version (2.0.0) was posted here July 12, 2014. -->
 
<!-- The current version (2.0.0) was posted here July 12, 2014. -->
The current version (2.0.1) was posted here August 5, 2014.  
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<!-- The current version (2.0.1) was posted here August 5, 2014. -->
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<!-- The current version (2.1.0) was posted here August 13, 2014. -->
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The current version (2.2.0) was posted here December 14, 2014.  
 
While it should be possible to build Phycas on most Linux systems, we can only provide pre-built versions for a couple of different combinations of operating system and Python version.
 
While it should be possible to build Phycas on most Linux systems, we can only provide pre-built versions for a couple of different combinations of operating system and Python version.
  
 
== Manual ==
 
== Manual ==
  
* Download [http://www.eeb.uconn.edu/projects/phycas/downloads/v2.0/phycas-manual-2.0.0.pdf phycas-manual-2.0.0.pdf]
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* Download [http://hydrodictyon.eeb.uconn.edu/projects/phycas/downloads/v2.2/phycas-manual-2.2.0.pdf phycas-manual-2.2.0.pdf]
  
 
== Pre-built version for MacOS 10.9 (Mavericks) ==
 
== Pre-built version for MacOS 10.9 (Mavericks) ==
  
# Download [http://www.eeb.uconn.edu/projects/phycas/downloads/v2.0/phycas-2.0.1-mac.tar.gz phycas-2.0.1-mac.tar.gz]
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# Download [http://hydrodictyon.eeb.uconn.edu/projects/phycas/downloads/v2.2/phycas-2.2.0-mac.tar.gz phycas-2.2.0-mac.tar.gz]
 
# Follow directions in the manual to install
 
# Follow directions in the manual to install
  
== Pre-built version for Windows 7, Python 2.7 ==
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== Pre-built 32-bit version for Windows 7/8, Python 2.7 ==
  
# Download [http://www.eeb.uconn.edu/projects/phycas/downloads/v2.0/phycas-2.0.1-win.zip phycas-2.0.1-win.zip]
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# Download [http://hydrodictyon.eeb.uconn.edu/projects/phycas/downloads/v2.2/phycas-2.2.0-win.zip phycas-2.2.0-win.zip]
 
# Follow directions in the manual to install
 
# Follow directions in the manual to install
  
 
== Build from source on Linux ==
 
== Build from source on Linux ==
  
# Download [http://www.eeb.uconn.edu/projects/phycas/downloads/v2.0/phycas-2.0.0-src.tar.gz phycas-2.0.0-src.tar.gz]
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# Download [http://hydrodictyon.eeb.uconn.edu/projects/phycas/downloads/v2.2/phycas-2.2.0-src.tar.gz phycas-2.2.0-src.tar.gz]
# Download [http://www.eeb.uconn.edu/projects/phycas/downloads/v2.0/INSTALL INSTALL]
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# Download [http://hydrodictyon.eeb.uconn.edu/projects/phycas/downloads/v2.2/INSTALL INSTALL]
 
# Follow directions in the INSTALL file to build a version from source
 
# Follow directions in the INSTALL file to build a version from source
  
 
== Problems? ==
 
== Problems? ==
  
Version 2.0 is a major revision, and we have changed the way we distribute Phycas, so it is quite possible that there are glitches that need to be worked out. If you have problems getting Phycas to work, please write to [mailto:paul.lewis@uconn.edu Paul Lewis].
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Version 2.0 was a major revision, and we have changed the way we distribute Phycas, so it is quite possible that there are glitches that need to be worked out. If you have problems getting Phycas to work, please write to [mailto:paul.lewis@uconn.edu Paul Lewis].
  
 
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Latest revision as of 02:30, 27 August 2015

Phycas is a Python extension for carrying out Bayesian phylogenetic analyses. The current version (2.2.0) was posted here December 14, 2014. While it should be possible to build Phycas on most Linux systems, we can only provide pre-built versions for a couple of different combinations of operating system and Python version.

Manual

Pre-built version for MacOS 10.9 (Mavericks)

  1. Download phycas-2.2.0-mac.tar.gz
  2. Follow directions in the manual to install

Pre-built 32-bit version for Windows 7/8, Python 2.7

  1. Download phycas-2.2.0-win.zip
  2. Follow directions in the manual to install

Build from source on Linux

  1. Download phycas-2.2.0-src.tar.gz
  2. Download INSTALL
  3. Follow directions in the INSTALL file to build a version from source

Problems?

Version 2.0 was a major revision, and we have changed the way we distribute Phycas, so it is quite possible that there are glitches that need to be worked out. If you have problems getting Phycas to work, please write to Paul Lewis.