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University of Connecticut Mark Urban
Eco-Evolution in Space

Jonathan Richardson

Postdoctoral Fellow

Contact Information

Office: 213 Pharmacy Biology Building
Phone: 860-486-6154


B.S. Biology 2004 Univerisity of Virginia
Ph.D. Forestry & Env. Studies 2012 Yale University

Research Interests

I am a biologist studying the evolutionary and ecological processes driving patterns of adaptation and community dynamics in nature. I am particularly interested in how these patterns can change at different spatial scales due to variation in gene flow and natural selection. In this research, I use molecular genetic, physiological and experimental techniques to explore the mechanisms shaping the patterns observed in the field. My research also spans levels of biological organization, from genes to phenotypes to communities. To date, most of my research has focused on amphibians, an ideal study system which offers tractable units for research on spatial processes.

Below is a brief overview of several ongoing projects. For more details on my research, teaching and outreach, please visit the link to the right.

Evolutionary ecology across spatial scales

Evolutionary divergence between populations depends on the interplay between natural selection and gene flow between habitats. Given assumptions about high gene flow, very little research has explored this divergence at fine spatial scales. Using transplant experiments between ponds, novel genetic analyses and controlled lab experiments, we have found that adaptive divergence of amphibian populations can occur at fine spatial scales in response to strong natural selection. I am currently extending this work by (A) manipulating natural selection in the field and tracking the community response, (B) using transcriptomics to measure differences in gene expression in response to selection, and (C) surveying the spatial scale of adaptation across a wide range of species.

Landscape genetics

One primary goal of conservation is to understand what features on the landscape serve as barriers to movement, and to mitigate the effects of these barriers. To this end, I use landscape genetic approaches to identify these potential barriers among populations of wood frogs and spotted salamanders throughout the northeastern U.S. The sampling design and statistical analyses of this work allow me to directly compare the landscape effects on each species. The results indicate that wood frogs and spotted salamanders are clearly experiencing the landscape differently, even though they are similar ecologically in terms of phenology and habitat use. Roads are associated with genetic breaks in wood frogs, while the presence of rivers on the landscape lead to genetic divergence in salamanders. This work highlights the fact that landscapes do not have homogonous effects on species, and the importance of investigating multiple species to assess landscape effects on dispersal.

Above: Land cover (top) and resistance surface (bottom) maps used to model dispersal and gene flow across the landscape.

Ecological physiology

All physiological processes occur within an ecological context. Within this environmental context, I am examining the physiological adaptations that allow the marbled salamander (Ambystoma opacum) to persist in the northern part of its range. Their larvae must overwinter in ponds, and as a result, their range is restricted to areas with mean winter temperatures near or above freezing. Marbled salamander occurrence may be associated with dissolved oxygen (DO) levels, which decrease rapidly without air exchange once ponds freeze. To explore the physiological mechanisms behind this pattern we are A) monitoring DO levels in ponds throughout their northern range, B) using experiments to test physiological tolerance to freezing and reduced DO, and C) exploring potential adaptations in gill structure and oxygen consumption across a latitudinal gradient in temperature. This project has direct implications for climate change, as the marbled salamander has been expanding northward as winter temperature increases. In separate ongoing work, I am also exploring variation in amphibian metabolism using data on foraging behavior, assimilation efficiency and elemental nutrient composition (i.e. carbon:nitrogen:hydrogen ratios).

Eco-evolutionary dynamics in natural populations

Over the past ten years there has been a growing appreciation that populations can evolve in response to natural selection over times scales relevant for ecological processes. This means that not only can ecological changes in a habitat lead to phenotypic adaptations (which has long been appreciated), but that evolutionary changes in phenotype can influence ecological variables within a habitat within the same time frame. We are exploring these eco-evolutionary dynamics in a set of natural pond communities that experience heterogeneous predation risks (and hence natural selection) across the landscape. We have found that predation risk across years leads to evolved responses in spotted salamander foraging behavior and growth rates. We are currently conducting whole-pond and enclosure experiments to manipulate natural selection from aquatic predators, and then tracking both the evolutionary response of their salamander prey and the community-level resource effects across trophic levels (i.e. primary productivity, zooplankton diversity and abundance, macroinvertebrate assemblages).

Conservation genetics

Conservation efforts focus on the long-term persistence of populations, including demographic trends and genetic viability over time. Spring-breeding amphibian aggregations provide in interesting system to answer questions that lie at the intersection of population demography and population genetics. In many species adults arrive at vernal ponds to breed shortly after ponds have thawed, and breeding concludes within a week or two. As a result, it is straightforward to census these populations during this contracted breeding period. However, detecting trends can take many years. To compare the use of survey data with efficiently obtained genetic estimates of population size, I am comparing long-term (13 years) demographic estimates of population size (Nc) with genetic estimates of effective population size (Ne) that can be obtained quickly. Encouragingly, the genetic and demographic estimates correspond closely, indicating that Ne may be a suitable tool for pressing conservation assessments of amphibian populations.


Richardson, J. L., M. C. Urban, D. I. Bolnick, and D. K. Skelly. 2014. Microgeographic adaptation and the spatial scale of evolution. Trends in Ecology & Evolution. 29(3): 165-176. Link

Urban, M. C., J. L. Richardson, and N. A. Freidenfelds. 2014. Plasticity and genetic adaptation mediate amphibian and reptile responses to climate change. Evolutionary Applications. 7: 88-103. Link

Richardson, J. L. 2014. Death, taxes and relentless evolution in nature. Trends in Ecology & Evolution. 29: 6-7. Link

Richardson, J. L., and M. C. Urban. 2013. Strong selection barriers explain microgeographic adaptation in wild salamander populations. Evolution. 67(6): 1729-1740. Link

Richards-Hrdlicka, K., J. L. Richardson, and L. Mohabir. 2013. First survey for the amphibian cytrid fungus Batrachochytrium dendrobatidis in Connecticut (USA) finds widespread prevalence. Diseases of Aquatic Organisms. 102: 169-180. Link

Richardson, J. L. 2012. Divergent landscape effects on population connectivity in two co-occurring amphibian species. Molecular Ecology 21(18): 4437-4451. Link

Richardson, J. L. and H. Gruner. 2012. An Ecological Spring Awakening in Our Vernal Ponds. Connecticut Wildlife 32(2): 8-9. Link

Skelly, D. K., and J. L. Richardson. 2010. Larval sampling. Chapter 4 in Amphibian Ecology and Conservation: A Handbook of Techniques. (C. K. Dodd, Editor). Oxford University Press. Link

Wilkinson, E. J., J. L. Richardson, and H. Sherk. 2007. Accurate visual guidance despite severe neglect. European Journal of Neuroscience. 25(7): 2214-2223.

Richardson, J. L. 2006. Novel features of an inducible defense system in larval tree frogs (Hyla chrysoscelis). Ecology. 87(3): 780-787. Link

Checking out egg masses on a vernal pond natural history hike.

Spotted salamander egg mass.

Spotted (left) and predatory marbled (right) salamander larvae by June in Connecticut vernal ponds.

Adult wood frogs (R. sylvatica) in amplexus.