#NEXUS [! Example of RNA data] BEGIN taxa; DIMENSIONS ntax=8; TAXLABELS [1] Tobacco [2] Rice [3] Marchantia [4] Chlamydomonas [5] Chlorella [6] Euglena [7] Anacystis_nidulans [8] Olithodiscus ; END; BEGIN characters; DIMENSIONS nchar=920; FORMAT datatype=RNA missing=? gap=- [symbols="A C G U"] labels interleave ; MATRIX Tobacco AAGAACCUGCCCUUGGGAGCUGGAAACGGCUGC Rice AAGAACCUGCCCUUGGGAACUGGAAACGGUUGC Marchantia AAGAACCUGCCCUUGGGAGCUGGAAACGGUUGC Chlamydomonas AAGAACCUACCUAUCGGAUUGGGAAACUGUUGC Chlorella AAGAACCUACCUUUAGGAACUGGAAACGGUUGC Euglena AAGAAUCUGCGCUUGGGAGAUGGAAACGUUUGC Anacystis_nidulans GAGAAUCUGCCUACAGGAGUUGGAAACGACUGC Olithodiscus GAGAAUCUGCCUUUAGGAUUUGGAAACGAAUGC Tobacco UAAUACCCCGUAGGGGCUCGCGUCUGAUUAGCU Rice UAAUACCCCGUAGGGGCUCGCGUCUGAUUAGCU Marchantia UAAUACCCCAUAGGGGCUUGCGUCUGAUUAGCU Chlamydomonas UAAUACCCCAUAGGGGCUUGCGUCUGAUUAGCU Chlorella UAAUACCCCAUAUGGGCUUGCGUCUGAUUAGCU Euglena UAAUGCCUCAUAUGAGCUUGCAUCUGAUUAGCU Anacystis_nidulans UAAUACCCGAUAUGAGCUCGCGUCUGAUUAGCU Olithodiscus UAAUACCUUAUAGGAGCUCGCGGCUGAUUAGCU Tobacco AGUUGGUGGCAAGCUUACCAAGGCGAUGACUGG Rice AGUUGGUGGCAAGCUUACCAAGGCGAUGACUGG Marchantia AGUUGGUGGUAAGCUUACCAAGGCGACGACUGG Chlamydomonas AGUUGGUGGUAAGCCUCCCAAGGCCACGACUGG Chlorella UGUUGGUGGUAAGCUUACCAAGGCAACGACUGG Euglena UGUUGGUGGUAAGCUUACCAAGGCGACGACUGA Anacystis_nidulans AGUUGGUGGUAAGCCUACCAAGGCGACGACUGG Olithodiscus AGUUGGUGGUAAGCCUACCAAGGCGAUCACUGA Tobacco UCCGAGAGGAUGAUCAGCCACACUGGGACUGAG Rice UCCGAGAGGAUGAUCAGCCACACUGGGACUGAG Marchantia UCUGAGAGGAUGAUCAGCCACACUGGGACUGAG Chlamydomonas UCUGAGAGGAUGAUCAGCCACACUGGGACUGAG Chlorella UCUGAGAGGAUGAUCAGCCACACUGGGACUGAG Euglena UUUGAGAGGAUGAUCAGCCACACUGGGAUUGAG Anacystis_nidulans UCUGAGAGGAUGAUCAGCCACACUGGGACUGAG Olithodiscus UUUGAGAGGAUGAUCAGUCACACUGGAACUGAG Tobacco ACACGGCCCAGACUCCUACGGGAGGCAGCAGUG Rice ACACGGCCCAGACUCCUACGGGAGGCAGCAGUG Marchantia ACACGGCCCAGACUCUUACGGGAGGCAGCAGUG Chlamydomonas ACACGGCCCAGACUCCUACGGGAGGCAGCAGUG Chlorella ACACGGCCCAGACUUCUACGGAAGGCAGCAGUG Euglena A-ACGGAACAGACUUCUACGGAAGGCAGCAGUG Anacystis_nidulans ACACGGCCCAGACUCCUACGGGAGGCAGCAGUG Olithodiscus ACACGGUCCAGACUCCUACGGGAGGCAGCAGUG Tobacco GGGAAUUUUCCGCAAUGGGCGAAAGACGGAGCA Rice GGGAAUUUUCCGCAAUGGGCGAAAGACGGAGCA Marchantia GGGAAUUUUCCGCAAUGGGCGAAACACGGAGCA Chlamydomonas AGGAAUUUUUCGCAAUGGGCGCAAGACGGAGCA Chlorella AGGAAUUUUCCGCAAUGGGCGAAAGACGGAGCA Euglena AGGAAUUUUCCGCAAUGGGCGCAAGACGGAGCA Anacystis_nidulans GGGAAUUUUCCGCAAUGGGCGCAAGACGGAGCA Olithodiscus GGGAAUUUUCUGCAAUGGGCGAAAGACAGAGCA Tobacco AUGCCGCGUGGAGGUAGAAGGGGGUCGUGACUU Rice AUGCCGCGUGGAGGUGGAAGGGGUCGUCAACUU Marchantia AUGCCGCGUGGAGGUAGAAGGGGGUCGUAACUU Chlamydomonas AUGCCGCGUGCAGGAAGAAGGGGGUCGUAACUU Chlorella AUGCCGCGUGGAGGAUGACAGGGGUCGUAACUU Euglena AUACCGCGUGAAGGAAGACGGGGGUUGAAACUU Anacystis_nidulans ACGCCGCGUGGGGGAGGAAGGGGACUGUAACUU Olithodiscus AUACCGCGUGAGGGAUGACAGGGAUUGUAACUU Tobacco UUCCCGGAGAAGAUGACGGUAUCUGGGGAAUAA Rice UUCUCGGAGAAGAUGACGGUAUCUGAGGAAUAA Marchantia UUCUCAGAGAAGAUGACGGUAUCUGAGGAAUAA Chlamydomonas UUCUCAGAGAAGAUGACGGUAUCUGAGGAAUAA Chlorella UUCUCAGAGAAGAUGACGGUAUCUGAGGAAUAA Euglena UUCUCAAAGAAGAUGACGGUAUUUGAGGAAUAA Anacystis_nidulans UUCUCAGGGAAGAUGACGGUACCUGAGGAAUAA Olithodiscus UUUUCAGGGAGGAUGACGUUACCUGAAGAAUAA Tobacco GCAUCGGCUAACUCUGAAUCCCAGGGCUCAACC Rice GCAUCGGCUAACUCUGAAUCCCAGGGCUCAACC Marchantia GCAUCGGCUAACUCUGAAUCCCAGGGCUCAACC Chlamydomonas GCACCGGCUAACUCUGAAUACCAGGGCUCAACC Chlorella GCAUCGGCUAACUCCGAAGAUCAGGGCUUAACC Euglena GCAUCGGCUAAUUCCGAAAGUCAAAGCUUAACU Anacystis_nidulans GCCUCGGCUAAUUCCGAAGCGUGGGGCUCAACC Olithodiscus GCAUCGGCUAACUCCGAAUCUUAAGGCUCAACC Tobacco CUGGACAGGCGGUGGACUGGAGUACGGUAGGGG Rice CUGGACAGGCGGUGGACUGGAGUACGGUAGGGG Marchantia CUGGACAGGCGGUGGACUGGAGUACGGUAGGGG Chlamydomonas UUGGACCGGCAUUGGACUUGAGUACGGUAGGGG Chlorella CUGAGUCGGCAGUAGACUUGAGUACGGUAGGGG Euglena UUGGAAGGGCAUUAAACUUGAGUAUGGUAGGGG Anacystis_nidulans UCAUACAGGCAAUGGACUAGAGUAUGGUAGGGG Olithodiscus UUAAACCAGCAAUGGACUUGAGUGUGGUAGAGG Tobacco CAGAGGGAAUUGUGGAGCGGUGAAAUGCGUAGA Rice CAGAGGGAAUUGUGGAGCGGUGAAAUGCAUUGA Marchantia CAGAGGGAAUUGUGGAGCGGUGAAAUGCGUAGA Chlamydomonas CAGAGGGAAUUGUGGAGCGGUGAAAUGCGUAGA Chlorella CAGAGGGAAUUGUGUAGCGGUGAAAUGCGUAGA Euglena UGAAGGGAAUUGUGUAGCGGUGAAAUGCGUAGA Anacystis_nidulans UAGCGGGAAUUGUGUAGCGGUGAAAUGCGUAGA Olithodiscus UAGAGGGAAUUGUGGAGCGGUGAAAUGCGUAGA Tobacco GAUCGGAAAGAACACCAACGGCGAAAGCACUCU Rice GAUCGGAAAGAACACCAACGGCGAAAGCACUCU Marchantia GAUCGGAAAGAACACCAAUGGCGAAAGCACUCU Chlamydomonas GAUAUGGAGGAACACCAGUGGCGAAGGCGCUCU Chlorella GAUCGGGAAGAACACCAAUGGCGAAAG-ACUCU Euglena GAUUGGAAAGAACACCAAUGGCGAAGGCACUUU Anacystis_nidulans UAUCUGGAAGAACACCAGCGGCGAAAGCGCGCU Olithodiscus UAUUGGAAAGACCACCAAUGGCGAAGGCACUCU Tobacco GCUGGGCCGACACUGACACUGAGAGACGAAAGC Rice GCUGGGCCGACACUGACACUGAGAGACGAAAGC Marchantia UCUGGGCCGACACUGACACUGAGAGACGAAAGC Chlamydomonas GCUGGGCCGAAACUGACACUGAGAGACGAAAGC Chlorella GCUGGGCCGAAACUGACACUCAGAGACGAAAGC Euglena UCUAGGCCAAUACUGACGCUGAGAAACGAAAGC Anacystis_nidulans ACUGGGCCAUAACUGACGCUCAUGGACGAAAGC Olithodiscus ACUGGGCCAUUACUGACACUGAGAGACGAAAGC Tobacco UAGGGGAGCGAAUGGGAUUAGAUACCCCAGUAG Rice UAGGGGAGCAAAUGGGAUUAGAGACCCCAGUAG Marchantia UAGGGGAGCAAAUGGGAUUAGAUACCCCAGUAG Chlamydomonas UGGGGGAGCGAAUAGGAUUAGAUACCCUAGUAG Chlorella UAGGGGAGCGAAUGGGAUUAGAUACCCCAGUAG Euglena UGAGGGAGCAAACAGGAUUAGAUACCCU-GUAG Anacystis_nidulans UAGGGGAGCGAAAGGGAUUAGAUACCCCUGUAG Olithodiscus UAGGGGAGCAAAUGGGAUUAGAUACCCCAGUAG Tobacco UCCUAGCCGUAAACGAUGGAUACUAGGCGCUGC Rice UCCUAGCCGUAAACGAUGGAUACUAGGUGCUGC Marchantia UCCUAGCCGUAAACGAUGGAUACUAAGCGCUGC Chlamydomonas UCCCAGCCGUAAACUAUGGAGACUAAGUGCUGC Chlorella UCCUAGCCGUAAACGAUGGAUACUAAGUGCUGC Euglena UCUUGGCCGUAAACUAUGGAUACUAAGUGGUGC Anacystis_nidulans UCCUAGCCGUAAACGAUGAACACUAGGUGUUGC Olithodiscus UCCUAGCUGUAAACGAUGGAUACUAGAUGUCGC Tobacco AGUGCUGUAGCUAACGCGUUAAGUAUCCCGCCU Rice AGUGCUGUAGCUAACGCGUUAAGUAUCCCGCCU Marchantia AGUGCUGUAGCUAACGCGUUAAGUAUCCCGCCU Chlamydomonas AGUGCUGUAGCUAACGCGUUAAGUCUCCCGCCU Chlorella AGUACUGUAGCUAACGCGUGAAGUAUCCCGCCU Euglena ACUGCUGUAGUUAACACGUUAAGUAUCCCGCCU Anacystis_nidulans AGUGCCGUAGCCAACGCGUUAAGUGUUCCGCCU Olithodiscus GGUAUUAUAGCUAACGCGUUAAGUAUCCCGCCU Tobacco GGGGAGUACGUUCGCAAGAAUGAAACUCAAAGG Rice GGGGAGUACGUUCGCAAGAAUGAAACUCAAAGG Marchantia GGGGAGUACGUUCGCAAGAAUGAAACUCAAAGG Chlamydomonas GGGGAGUAUGCUCGCAAGAGUGAAACUCAAAGG Chlorella GGGGAGUAUGCUCGCAAGAGUGAAACUCAAAGG Euglena GGGGAGUACGCUUGCACAAGUGAAACUCAAAGG Anacystis_nidulans GGGGAGUACGCACGCAAGUUGGAAACUCAAAGG Olithodiscus GGGAAGUAUGCUCGCAAGAGUGAAACUCAAAGG Tobacco AAUUGACGGGGGCCCGCACAAGCGGUGGAGCAU Rice AAUUGACGGGGGCCCGCACAAGCGGUGGAGCAU Marchantia AAUUGACGGGGGCCCGCACAAGCGGUGGAGCAU Chlamydomonas AAUUGACGGGA--CCGCACAAGCGGUGGAUUAU Chlorella AAUUGACGGGGGCCCGCACAAGCGGUGGAGCAU Euglena AAUUGACGGGGGCCCGCACAAGCGGUGGAGCAU Anacystis_nidulans AAUUGACGGGGGCCCGCACAAGCGGUGGAGUAU Olithodiscus AAUUGACGGGGGCCCGCACAAGCGGUGGAGCAU Tobacco GUGGUUUAAUUCGAUGCAAAGCGAAGAACCUUA Rice GUGGUUUAAUUCGAUGCAAAGCGAAGAACCUUA Marchantia GUGGUUUAAUUCGAUGCAACGCGAAGAACCUUA Chlamydomonas GUGGAUUAAUUCGAUACAACGCGAAGAACCUUA Chlorella GUGGUUUAAUUCGAUGCAACGCGAAGAACCUUA Euglena GUGGUUUAAUUCGAUGCAACACGAAGAACCUUA Anacystis_nidulans GUGGUUUAAUUCGAUGCAACGCGAAGAACCUUA Olithodiscus GUGGUUUAAUUCGAUGCAACGCGAAGAACCUUA Tobacco CCAGGGCUUGACAAUCCUCUUGAAAACAGGUGG Rice CCAGGGCUUGACAAUCCUCUUGAAAACAGGUGG Marchantia CCAGGGCUUGACAAUCUUUUUGAAAACAGGUGG Chlamydomonas CCAGGGUUUGACAACCUCUCAGAAAACAGGUGG Chlorella CCAGGGCUUGACA------------ACAGGUGG Euglena CCAGGAUUUGACAA-------GAAAACAGGUGG Anacystis_nidulans CCAGGGUUUGACAAUCUCUUGGAAAACAGGUGG Olithodiscus CCAGGGUUUGACAAGUUUUUUGAAAACAGGUGG Tobacco UGCAUGGCUGUCGUCAGCGUGCCGUAAGUGUUG Rice UGCAUGGCUGUCGUCAGCGUGCCGUAAGUGUUG Marchantia UGCAUGGCUGUCGUCAGCGUGCCGUAAGUGUUG Chlamydomonas UGCAUGGCUGUCGUCAGCGUGCUGUGAAUGUAU Chlorella UGCAUGGCUGUCGUCAGCGUGUCGUGAGUGUUG Euglena UGCAUGGCUGUCGUCAGCGUGUCGUGAGUGUUG Anacystis_nidulans UGCAUGGCUGUCGUCAGCGUGUCGUGAGUGUUG Olithodiscus UGCAUGGCUGUCGUCAGCGUGUCGUGAGUGUUG Tobacco GGUUAAGUCCCGCAACGAGCGCAACCCUCGUGU Rice GGUUAAGUCUCGCAACGAGCGCAACCCUCGUGU Marchantia GGUUAAGUCCCGCAACGAGCGCAACCCUCUUGU Chlamydomonas AGUUAAGUCUCAUAACGAGCGCAACCCUCGUCU Chlorella GGUUAAGUCCCGCAACGAGCGCAACCCUUGUUU Euglena GGUUAAGUCCCGCAACGAGCGCAACCCUUUUUU Anacystis_nidulans GGUUAAGUCCCGCAACGAGCGCAACCCACGUUU Olithodiscus GGUUAAGUCCCGCAACGAGCGUAACCCUUGUUU Tobacco UCGGAGGAAGGUGAGGAUGACGUCAAGUCAUCA Rice UCGGAGGAAGGAGAGGAUGAGGCCAAGUCAUCA Marchantia UCGGAGGAAGGUGAGGAUGACGUCAAGUCAGCA Chlamydomonas UCGGAGGAAGGUGAGGAUGACGUCAAGUCAGCA Chlorella UCGGAGGAAGGUGAGGAUGACGUCAAGUCAGCA Euglena UCGGAGGAAGGUGAGGACGACGUCAAGUCAUCA Anacystis_nidulans UCGGAGGAAGGUGUGGACGACGUCAAGUCAUCA Olithodiscus UCGGAGGAAGGUAAGGACGACGUCAAGUCAUCA Tobacco UGCCCCUUAGGGCGACACACGUGCUACAAUGGC Rice UGCCCCUUAGGGCGACACACGUGCUACAAUGGG Marchantia UGCCCCUUAGGGCGACACACGUGCUACAAUGGC Chlamydomonas UGCCCCUUAGGGCUUCACACGUAAUACAAUGGU Chlorella UGCCCCUUAGGGCGACACACGUGCUACAAUGGC Euglena UGCCCCUUAGGGCUACACACGUGCUACAAUGGU Anacystis_nidulans UGCCCCUUAGGGCUACACACGUACUACAAUGCU Olithodiscus UGCCCCUUAGGGCUACACACGUGCUACAUUGGG Tobacco CGGGACAAAGGGUCGCGAUCCCGCGAG-GUGAG Rice CGGGACAAAGGGUCGCGAUCUCGCGAGGGUGAG Marchantia CGGGACAAAGGGUCGCGACCUCGCGAGAGAAAG Chlamydomonas UGGGACAAUCAGAAGCGA-CUCGUGAGAGCUAG Chlorella CAGGACAAUGAGAUGCUACCUCGCGAGAGCAAG Euglena UAAGACAAUAAGUUGCAAUUUUGUGAAAAUGAG Anacystis_nidulans CCGGACAGCGAGACGCGAAGCCGCGAGGUGAAG Olithodiscus UAGAACAAUAAGUUGCUAAGUUGCGAAACCAAG Tobacco CUAAAACCCGUCCUCAGUUCGGAUUGCAGGCUG Rice CUAAAACCCGUCCUCAGUUCGGAUUGCAGGCUG Marchantia CUAAAACCCGGCCUCAGUUCGGAUUGCAGGCUG Chlamydomonas CGGCAACCCAACCUCAGUUCGGAUUGUAGGCUG Chlorella CUAAAACCUGGUCUCAGUUCGGAUUGCAGGCUG Euglena CUAAAACUUAGCCUAAGUUCGGAUUGUAGGCUG Anacystis_nidulans CAAAAACCGGGGCUCAGUUCAGAUUGCAGGCUG Olithodiscus CGAAAAUCUACUCUAAGUUCGGAUUGUAGGCUG Tobacco CAACUCGCCUGCAUGAAGCCGGAAUCGCUAGUA Rice CAACUCGCCUGCAUGAAGCAGGAAUCGCUAGUA Marchantia CAACUCGCCUGCAUGAAGCCGGAAUCGCUAGUA Chlamydomonas CAACUCGCCUACAUGAAGCCGGAAUCGCUAGUA Chlorella CAACUCGCCUGCAUGAAGUCGGAAUCGCUAGUA Euglena AAACUCGCCUACAUGAAGCCGGAAUCGCUAGUA Anacystis_nidulans CAACUCGCCUGCAUGAAGGCGGAAUCGCUAGUA Olithodiscus CAACUCGCCUACAUAAAGAUGGAAUCGCUAGUA Tobacco AUCGCCGGUCAGAUACGGCGGUGAAUUCG Rice AUCGCCGGUCAGAUACGGCGGUGAAUCCG Marchantia AUCGCCGGUCAGAUACGGCGGUGAAUCCG Chlamydomonas AUCGCCAGUCAGAUAUGGCGGUGAAUACG Chlorella AUCGCUGGUCAGAUACAGCGGUGAAUACG Euglena AUCGCCGGUCAGAUACGGCGGUGAAUACG Anacystis_nidulans AUCGCAGGUCAGAUACUGCGGUGAAUACG Olithodiscus AUCGCUGGUCAGACACAGCGGUGAAU-CG ; END;