NEXUS CLASS LIBRARY home | classes | functions

NCL Member Functions

AbbreviatesNxsString
AbbreviationNxsToken
AddNxsReader
AddQuotesNxsString
AddRangeNxsSetReader
AddRowsNxsDiscreteMatrix
AddStateNxsDiscreteMatrix
AddStateNxsDiscreteMatrix
AddTailNxsString
AddTaxonLabelNxsTaxaBlock
AppendToCommentNxsToken
AppendToTokenNxsToken
ApplyDelsetNxsCharactersBlock
ApplyExSetNxsAssumptionsBlock
ApplyExsetNxsCharactersBlock
ApplyIncludesetNxsCharactersBlock
ApplyRestoresetNxsCharactersBlock
AtEOFNxsToken
AtEOLNxsToken
BASICCMDLINEBASICCMDLINE
~BASICCMDLINEBASICCMDLINE
BeginsNxsToken
BlanksToUnderscoresNxsString
BlanksToUnderscoresNxsToken
BlockListEmptyNxsReader
BreakPipeSeparatedListNxsString
BriefReportNxsTreesBlock
BuildCharPosArrayNxsCharactersBlock
CapitalizeNxsString
ChangeTaxonLabelNxsTaxaBlock
CharLabelToNumberNxsCharactersBlock
CharLabelToNumberNxsBlock
CharLabelToNumberNxsEmptyBlock
CharLabelToNumberBASICCMDLINE
clearNxsString
ConsumeNxsCharactersBlock
ConvertToDoubleNxsString
ConvertToIntNxsString
ConvertToLongNxsString
ConvertToUnsignedNxsString
CopyFromNxsDiscreteDatum
CopyStatesFromFirstTaxonNxsDiscreteMatrix
DebugReportBlockNxsReader
DebugReportBlockMyNexusFileReader
DebugSaveMatrixNxsDiscreteMatrix
DebugShowMatrixNxsCharactersBlock
DeleteTaxonNxsCharactersBlock
DetachNxsReader
DisableNxsBlock
DuplicateRowNxsDiscreteMatrix
EnableNxsBlock
endlNxsString
EnteringBlockNxsReader
EnteringBlockMyNexusFileReader
EnteringBlockBASICCMDLINE
EqualsNxsString
EqualsNxsToken
EqualsCaseInsensitiveNxsString
ExcludeCharacterNxsCharactersBlock
ExecuteNxsReader
ExecuteStartingNxsReader
ExecuteStoppingNxsReader
ExitingBlockNxsReader
ExitingBlockMyNexusFileReader
ExitingBlockBASICCMDLINE
FactoryDefaultsBASICCMDLINE
FileExistsMyNexusFileReader
FileExistsBASICCMDLINE
FindTaxonNxsTaxaBlock
FlushNxsDiscreteMatrix
GetActiveCharArrayNxsCharactersBlock
GetActiveTaxonArrayNxsCharactersBlock
GetCharLabelNxsCharactersBlock
GetCharPosNxsCharactersBlock
GetCharSetNxsAssumptionsBlock
GetCharSetNamesNxsAssumptionsBlock
GetCommentNxsToken
GetCurlyBracketedTokenNxsToken
GetDataTypeNxsCharactersBlock
GetDefCharSetNameNxsAssumptionsBlock
GetDefExSetNameNxsAssumptionsBlock
GetDefTaxSetNameNxsAssumptionsBlock
GetDiscreteDatumNxsDiscreteMatrix
GetDistanceNxsDistancesBlock
GetDoubleQuotedTokenNxsToken
GetExSetNxsAssumptionsBlock
GetExSetNamesNxsAssumptionsBlock
GetFileColumnNxsToken
GetFileLineNxsToken
GetFileNameBASICCMDLINE
GetFilePositionNxsToken
GetGapSymbolNxsCharactersBlock
GetIDNxsBlock
GetInternalRepresentationNxsCharactersBlock
GetMatchcharSymbolNxsCharactersBlock
GetMaxObsNumStatesNxsCharactersBlock
GetMaxTaxonLabelLengthNxsTaxaBlock
GetMissingSymbolNxsCharactersBlock
GetMissingSymbolNxsDistancesBlock
GetNCharNxsCharactersBlock
GetNcharNxsDistancesBlock
GetNCharTotalNxsCharactersBlock
GetNextCharNxsToken
GetNextTokenNxsToken
GetNTaxNxsCharactersBlock
GetNtaxNxsDistancesBlock
GetNTaxTotalNxsCharactersBlock
GetNumActiveCharNxsCharactersBlock
GetNumActiveTaxaNxsCharactersBlock
GetNumCharSetsNxsAssumptionsBlock
GetNumDefaultTreeNxsTreesBlock
GetNumEliminatedNxsCharactersBlock
GetNumEquatesNxsCharactersBlock
GetNumExSetsNxsAssumptionsBlock
GetNumMatrixColsNxsCharactersBlock
GetNumMatrixRowsNxsCharactersBlock
GetNumStatesNxsCharactersBlock
GetNumStatesNxsDiscreteMatrix
GetNumStatesNxsDiscreteMatrix
GetNumTaxonLabelsNxsTaxaBlock
GetNumTaxSetsNxsAssumptionsBlock
GetNumTreesNxsTreesBlock
GetObsNumStatesNxsCharactersBlock
GetObsNumStatesNxsDiscreteMatrix
GetOrigCharIndexNxsCharactersBlock
GetOrigCharNumberNxsCharactersBlock
GetOrigTaxonIndexNxsCharactersBlock
GetOrigTaxonNumberNxsCharactersBlock
GetParentheticalTokenNxsToken
GetQuotedNxsString
GetQuotedNxsToken
GetStateNxsCharactersBlock
GetStateNxsDiscreteMatrix
GetStateNxsDiscreteMatrix
GetStateLabelNxsCharactersBlock
GetSymbolsNxsCharactersBlock
GetTaxonLabelNxsCharactersBlock
GetTaxonLabelNxsTaxaBlock
GetTaxPosNxsCharactersBlock
GetTaxSetNxsAssumptionsBlock
GetTaxSetNamesNxsAssumptionsBlock
GetTokenNxsToken
GetTokenAsCStrNxsToken
GetTokenLengthNxsToken
GetTokenReferenceNxsToken
GetTokenValueNxsSetReader
GetTranslatedTreeDescriptionNxsTreesBlock
GetTreeDescriptionNxsTreesBlock
GetTreeNameNxsTreesBlock
GetTriangleNxsDistancesBlock
GetVecOfPossibleAbbrevMatchesNxsString
HandleCharlabelsNxsCharactersBlock
HandleCharsetNxsAssumptionsBlock
HandleCharstatelabelsNxsCharactersBlock
HandleDimensionsNxsCharactersBlock
HandleDimensionsCommandNxsDistancesBlock
HandleEliminateNxsCharactersBlock
HandleEndblockNxsAssumptionsBlock
HandleEndblockNxsCharactersBlock
HandleEndblockNxsEmptyBlock
HandleEndblockBASICCMDLINE
HandleExecuteBASICCMDLINE
HandleExsetNxsAssumptionsBlock
HandleFormatNxsCharactersBlock
HandleFormatCommandNxsDistancesBlock
HandleHelpBASICCMDLINE
HandleLogBASICCMDLINE
HandleMatrixNxsCharactersBlock
HandleMatrixCommandNxsDistancesBlock
HandleNextCommandBASICCMDLINE
HandleNextPassNxsDistancesBlock
HandleNextStateNxsCharactersBlock
HandleShowBASICCMDLINE
HandleStatelabelsNxsCharactersBlock
HandleStdMatrixNxsCharactersBlock
HandleTaxlabelsNxsCharactersBlock
HandleTaxlabelsCommandNxsDistancesBlock
HandleTaxsetNxsAssumptionsBlock
HandleTokenStateNxsCharactersBlock
HandleTransposedMatrixNxsCharactersBlock
HandleTreeDescriptionNxsTreesBlock
IncludeCharacterNxsCharactersBlock
IsActiveCharNxsCharactersBlock
IsActiveTaxonNxsCharactersBlock
IsADoubleNxsString
IsALongNxsString
IsAlreadyDefinedNxsTaxaBlock
IsCapAbbreviationNxsString
IsDefaultTreeNxsTreesBlock
IsDeletedNxsCharactersBlock
IsDiagonalNxsDistancesBlock
IsEliminatedNxsCharactersBlock
IsEmptyNxsBlock
IsEnabledNxsBlock
IsExcludedNxsCharactersBlock
IsGapNxsDiscreteMatrix
IsGapNxsDiscreteMatrix
IsGapStateNxsCharactersBlock
IsInSymbolsNxsCharactersBlock
IsInterleaveNxsCharactersBlock
IsInterleaveNxsDistancesBlock
IsInVectorNxsString
IsLabelsNxsCharactersBlock
IsLabelsNxsDistancesBlock
IsLowerTriangularNxsDistancesBlock
IsMissingNxsDiscreteMatrix
IsMissingNxsDiscreteMatrix
IsMissingNxsDistancesBlock
IsMissingStateNxsCharactersBlock
IsNexusPunctuationNxsString
IsPlusMinusTokenNxsToken
IsPolymorphicNxsCharactersBlock
IsPolymorphicNxsDiscreteMatrix
IsPolymorphicNxsDiscreteMatrix
IsPunctuationNxsToken
IsPunctuationTokenNxsToken
IsRectangularNxsDistancesBlock
IsRespectCaseNxsCharactersBlock
IsRootedTreeNxsTreesBlock
IsStdAbbreviationNxsString
IsTokensNxsCharactersBlock
IsTransposeNxsCharactersBlock
IsUpperTriangularNxsDistancesBlock
IsUserSuppliedNxsBlock
IsWhitespaceNxsToken
IsWhitespaceTokenNxsToken
MyAssumptionsBlockMyAssumptionsBlock
MyCharactersBlockMyCharactersBlock
MyDataBlockMyDataBlock
MyNexusFileReaderMyNexusFileReader
~MyNexusFileReaderMyNexusFileReader
MyNexusTokenMyNexusToken
MyTokenMyToken
NCLCopyrightNoticeNxsReader
NCLHomePageURLNxsReader
NCLNameAndVersionNxsReader
NeedsQuotesNxsTaxaBlock
NexusErrorNxsReader
NexusErrorMyNexusFileReader
NexusErrorBASICCMDLINE
NStrCaseInsensitiveEqualsNStrCaseInsensitiveEquals
NStrCaseSensitiveEqualsNStrCaseSensitiveEquals
NumberThenWordNxsString
NxsAssumptionsBlockNxsAssumptionsBlock
~NxsAssumptionsBlockNxsAssumptionsBlock
NxsBlockNxsBlock
~NxsBlockNxsBlock
NxsCharactersBlockNxsCharactersBlock
~NxsCharactersBlockNxsCharactersBlock
NxsDataBlockNxsDataBlock
NxsDiscreteDatumNxsDiscreteDatum
~NxsDiscreteDatumNxsDiscreteDatum
NxsDiscreteMatrixNxsDiscreteMatrix
~NxsDiscreteMatrixNxsDiscreteMatrix
NxsDistanceDatumNxsDistanceDatum
~NxsDistanceDatumNxsDistanceDatum
NxsDistancesBlockNxsDistancesBlock
~NxsDistancesBlockNxsDistancesBlock
NxsEmptyBlockNxsEmptyBlock
~NxsEmptyBlockNxsEmptyBlock
NxsExceptionNxsException
NxsExceptionNxsException
NxsReaderNxsReader
~NxsReaderNxsReader
NxsSetReaderNxsSetReader
NxsStringNxsString
NxsStringNxsString
NxsStringNxsString
NxsTaxaBlockNxsTaxaBlock
~NxsTaxaBlockNxsTaxaBlock
NxsTokenNxsToken
~NxsTokenNxsToken
NxsTreesBlockNxsTreesBlock
~NxsTreesBlockNxsTreesBlock
operator()NStrCaseInsensitiveEquals
operator()NStrCaseSensitiveEquals
operator()NxsStringEqual
operator+=NxsString
operator+=NxsString
operator+=NxsString
operator+=NxsString
operator+=NxsString
operator+=NxsString
operator+=NxsString
operator+=NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator<<NxsString
operator=NxsString
operator=NxsString
OutputCommentNxsToken
OutputCommentNxsReader
OutputCommentMyToken
OutputCommentMyNexusFileReader
OutputCommentMyNexusToken
PositionInBlockListNxsReader
PositionInSymbolsNxsCharactersBlock
PreprocessNextCommandBASICCMDLINE
PrintFNxsString
PrintMessageBASICCMDLINE
PurgeBlocksBASICCMDLINE
p_strNxsString
QuotesNeededNxsString
ReadNxsAssumptionsBlock
ReadNxsCharactersBlock
ReadNxsBlock
ReadNxsTaxaBlock
ReadNxsDistancesBlock
ReadNxsEmptyBlock
ReadNxsTreesBlock
ReadBASICCMDLINE
ReassignNxsReader
ReplaceTaxaBlockPtrNxsAssumptionsBlock
ReplaceTaxaBlockPtrNxsTreesBlock
ReplaceTokenNxsToken
ReportNxsAssumptionsBlock
ReportNxsCharactersBlock
ReportNxsBlock
ReportNxsTaxaBlock
ReportNxsDistancesBlock
ReportNxsEmptyBlock
ReportNxsTreesBlock
ReportBASICCMDLINE
ResetNxsAssumptionsBlock
ResetNxsCharactersBlock
ResetNxsBlock
ResetNxsTaxaBlock
ResetNxsDataBlock
ResetNxsDiscreteMatrix
ResetNxsDistancesBlock
ResetNxsEmptyBlock
ResetNxsTreesBlock
ResetBASICCMDLINE
ResetSymbolsNxsCharactersBlock
ResetTokenNxsToken
RestoreTaxonNxsCharactersBlock
RightJustifyDblNxsString
RightJustifyLongNxsString
RightJustifyStringNxsString
RunNxsSetReader
RunBASICCMDLINE
SetCallbackNxsAssumptionsBlock
SetDistanceNxsDistancesBlock
SetGapNxsDiscreteMatrix
SetGapNxsDiscreteMatrix
SetLabileFlagBitNxsToken
SetMissingNxsDiscreteMatrix
SetMissingNxsDiscreteMatrix
SetMissingNxsDistancesBlock
SetNcharNxsDistancesBlock
SetNexusNxsBlock
SetNtaxNxsTaxaBlock
SetPolymorphicNxsDiscreteMatrix
SetPolymorphicNxsDiscreteMatrix
SetSpecialPunctuationCharacterNxsToken
SetStateNxsDiscreteMatrix
SetStateNxsDiscreteMatrix
SetToShortestAbbreviationNxsString
ShortenToNxsString
ShowStateLabelsNxsCharactersBlock
ShowStatesNxsCharactersBlock
SkippingBlockNxsReader
SkippingBlockMyNexusFileReader
SkippingBlockBASICCMDLINE
SkippingCommandNxsBlock
SkippingCommandNxsEmptyBlock
SkippingCommandMyCharactersBlock
SkippingCommandMyDataBlock
SkippingCommandMyAssumptionsBlock
SkippingCommandBASICCMDLINE
SkippingDisabledBlockNxsReader
SkippingDisabledBlockMyNexusFileReader
SkippingDisabledBlockBASICCMDLINE
StoppedOnNxsToken
StripWhitespaceNxsToken
TaxonLabelToNumberNxsAssumptionsBlock
TaxonLabelToNumberNxsCharactersBlock
TaxonLabelToNumberNxsBlock
TaxonLabelToNumberNxsEmptyBlock
TaxonLabelToNumberBASICCMDLINE
ToHexNxsString
ToLowerNxsString
ToUpperNxsString
ToUpperNxsToken
TransferToNxsDataBlock
UnderscoresToBlanksNxsString
UpperCasePrefixNxsString
UserQueryBASICCMDLINE
WriteNxsToken
WritelnNxsToken
WriteStatesNxsCharactersBlock