http://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Systematics_Seminar_Fall_2010&feed=atom&action=historySystematics Seminar Fall 2010 - Revision history2024-03-28T09:05:19ZRevision history for this page on the wikiMediaWiki 1.25.2http://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Systematics_Seminar_Fall_2010&diff=16540&oldid=prevPaulLewis at 17:53, 5 January 20112011-01-05T17:53:59Z<p></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 17:53, 5 January 2011</td>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">If you are looking for the current semester's Systematic Seminar web page, go to [[Systematics Seminar]] instead.</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  </div></td></tr>
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</table>PaulLewishttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Systematics_Seminar_Fall_2010&diff=16539&oldid=prevPaulLewis: New page: This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systemati...2011-01-05T17:52:48Z<p>New page: This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systemati...</p>
<p><b>New page</b></p><div>This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut. <br />
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[[Systematics Listserv|Click here for information about joining and using the Systematics email list]]<br />
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== Meeting time and place ==<br />
We are meeting this semester in the '''Bamford Room (TLS 171B) Tuesdays 4-5pm'''. <br />
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== Theme for Fall Semester 2010 ==<br />
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The theme for this semester will be decided at the organizational meeting.<br />
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== Schedule for Fall Semester 2010 ==<br />
'''Note: the papers linked here require a user name and password to access.''' If you have forgotten the user name and/or password, contact [mailto:paul.lewis@uconn.edu Paul Lewis]. If you want to upload a PDF file for an upcoming discussion, use the [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/upload.html Systematics Seminar PDF upload form]. Uploading PDFs requires the same user name and password as viewing PDFs.<br />
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=== Tuesday, August 31, 2010: ===<br />
Organizational meeting.<br />
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=== Tuesday, September 07, 2010: ===<br />
Discussion leader: [[Chris Owen]]<br/><br />
This week we will take a look at a new method to infer phylogeographic history on a continuous landscape.<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202010%20MBE.pdf}}Lemey et al. 2010 MBE.pdf<br />
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=== Tuesday, September 14, 2010: ===<br />
Discussion leader: [[Geert]]<br/><br />
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This paper uses the previous version of the model discussed by Chris last week.<br />
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/a/a1/Chapter4_ThesisFinalMarske.pdf}}Chapter4 Marske Thesis.pdf<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Marske%20Thesis%20Refereces.pdf}}Marske Thesis References.pdf<br />
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=== Tuesday, September 21, 2010: ===<br />
Discussion leader: [[Marc Suchard]]<br/><br />
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202009%20bayesian%20phylogeo%20sm.pdf}}Lemey et al. 2009 bayesian phylogeo sm.pdf<br />
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=== Tuesday, September 28, 2010: ===<br />
Discussion leader:JCarlos Villarreal<br />
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/smith2009.biogeography.opt4.pdf}} Smith, S. A. 2009. Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographic analysis of the Northern Hemisphere plant clade Caprifolieae. Journal of Biogeography. http://blackrim.org/projects/biogeography<br />
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=== Tuesday, October 5, 2010: ===<br />
Discussion leader:<br />
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemmon%20et%20al.%202009%20missing%20data.pdf}}Lemmon et al. 2009 missing data.pdf<br />
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=== Tuesday, October 12, 2010: ===<br />
Discussion leader: Elizabeth Timpe<br><br />
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::{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Wiens_Moen_JSE_2008.pdf}}Wiens_Moen_JSE_2008.pdf<br />
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=== Tuesday, October 19, 2010: ===<br />
Discussion leader: Beth Wade<br><br />
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Waters%202010%20SysBio%20gene%20tree%20vs%20spp%20tree.pdf}}Waters 2010 SysBio gene tree vs spp tree.pdf<br />
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=== Tuesday, October 26, 2010: ===<br />
Discussion leader: Daniel Fan<br><br />
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/evansetal2009.pdf}}Evans et al. 2009.pdf<br />
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=== Tuesday, November 9, 2010: ===<br />
Discussion leader: Cory Merow<br><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20DDI%20final_single.pdf}}Elith et al 2011 DDI final_single.pdf <br />
Appendices<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20online%20appendices%20final.pdf}}Elith et al 2011 online appendices final.pdf <br />
Sample data files for case study 2. I won't be running through this, but in case you're interested.... <br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al_data%20for%20CaseStudy2.zip}}Elith et al_data for CaseStudy2.zip<br />
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=== Tuesday, November 16, 2010: ===<br />
Discussion leader: [[Chris Owen]]<br><br />
This week we will look at the effects of unequal gene sampling on phylogenetic reconstruction.<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Choo%20et%20al.%202010.pdf}}Choo et al. 2010.pdf<br />
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=== Tuesday, November 30, 2010: ===<br />
Discussion leader: [[JC Villarreal]]<br><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Jian.etal.2008.systbiol.pdf}}Jian.etal.2008.systbiol.pdf<br />
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== Past Systematics Seminars ==<br />
* [[Systematics Seminar Spring 2010|Spring 2010]]<br />
* [[Systematics Seminar Fall 2009|Fall 2009]]<br />
* [[Systematics Seminar Fall 2008|Fall 2008]]<br />
* [[Systematics Seminar Spring 2008|Spring 2008]]<br />
* [[Systematics Seminar Fall 2007|Fall 2007]]<br />
* [[Systematics Seminar Spring 2007|Spring 2007]]<br />
* [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/SystSemFall2006.html Fall 2006]<br />
* [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/SystSemSpring2005.html Spring 2005]<br />
* [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/SystSemFall2004.html Fall 2004]<br />
* [http://hydrodictyon.eeb.uconn.edu/courses/phylomath/ Spring 2004]<br />
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[[Category:EEB Seminars]]</div>PaulLewis