Systematics Seminar Fall 2009

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This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.

Click here for information about joining and using the Systematics email list

Contents

Meeting time and place

We are meeting this semester in the Bamford Room (TLS 171B) Tuesdays 4-5pm.

Theme for Fall Semester 2009

This semester we will focus on speciation and hybridization, then transition into phylogeography/ historical biogeography. Random papers/ themes, however, are welcomed.

Schedule for Fall Semester 2009

Note: the papers linked here require a user name and password to access. If you have forgotten the user name and/or password, contact Paul Lewis. If you want to upload a PDF file for an upcoming discussion, use the Systematics Seminar PDF upload form. Uploading PDFs requires the same user name and password as viewing PDFs.

Tuesday, September 8th, 2009:

Discussion leader: Elizabeth Wade

Pdficon small.gifBossu_Near_2009_SysBio.pdf

Tuesday, September 15th, 2009

Discussion Leader: Elizabeth Timpe

Pdficon small.gifBonett and Chippindale 2004.pdf

Tuesday, September 22nd, 2009

Discussion leaders: Nic Tippery and Dave Wagner

Pdficon small.gifWhitfield et al. 2006. Thrice Out of Africa: Ancient and Recent Expansions of the Honey Bee, Apis mellifera. Science 314: 642-645.

http://www.sciencemag.org/cgi/content/abstract/314/5799/642

Pdficon small.gifAlbrecht et al. 2007. Invaders or endemics? Molecular phylogenetics, biogeography and systematics of Dreissena in the Balkans. Freshwater Biology 52: 1525-1536.

http://www3.interscience.wiley.com/journal/117962459/abstract

Tuesday, September 29th, 2009

Discussion leader: Chris Owen

Pdficon small.gifClark_et_al-2008-SystBio.pdf

Tuesday, October 6th, 2009

Discussion leader: Daniel Fan

We will continue talking about Dispersal-Extinction-Cladogesis (DEC) model this week. In 2005, Ree et al. proposed the initial version of DEC although this approach was not named at that time. In 2008, Ree and Smith developed it and published a paper in Sys. Bio., which might be thought as the second version. The paper we will read is about the third version of DEC, likelihood with fossil, and they call it DEC*.

Pdficon small.gifMoore et al. 2009. Incorporating Fossil Data in Biogeographic Inference: A Likelihood Approach.

Tuesday, October 13th, 2009

Juan Carlos Villarreal

Pdficon small.gifSantos.etal.2009.Plosbiolo.pdf

I would recommend to check Figure S6 (supplements are available online).

http://www.plosbiology.org/article/info:doi%2F10.1371%2Fjournal.pbio.1000056;jsessionid=697A5A8835708B33E83085CE4729FB59

The next paper is optional. It talks about priors for molecular dating analyses. Simon Ho has published a more recent paper on the topic, this is shorter/simpler.

Pdficon small.gifho.2007.j.avianbiol..pdf

Tuesday, October 20th, 2009

Discussion Leader: Roberta

Pdficon small.gif Hurt et al. 2009 A MULTILOCUS TEST OF SIMULTANEOUS DIVERGENCE ACROSS THE ISTHMUS OF PANAMA USING SNAPPING SHRIMP IN THE GENUS ALPHEUS

Tuesday, October 27th, 2009

Discussion leader: Geert Goemans

Pdficon small.gifHimes et al 2008.pdf

Tuesday, November 3rd, 2009

Discussion leader: Nic Tippery

Pdficon small.gifNielsen, R. and M. A. Beaumont. 2009. Statistical inferences in phylogeography. Molecular Ecology 18: 1034-1047.

http://www3.interscience.wiley.com/journal/121681049/abstract?CRETRY=1&SRETRY=0

Tuesday, November 10th, 2009

Discussion Leader: Beth Wade

Pdficon small.gifLemmon Lemmon 2008 Phylomapper.pdf

Tuesday, November 17th, 2009

Discussion leader: Karolina Fučíková

Pdficon small.gif Brawley et al. 2009.pdf

Tuesday, December 1st, 2009

Discussion Leader: Dave Wagner

Pdficon small.gifMcKenna and Farrell.pdf

Tuesday, December 8th, 2009

Discussion Leader: Chris Owen

Pdficon small.gifMoore & Donoghue 2009.pdf
Pdficon small.gifSupplementary Material.pdf


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