|
|
| Line 7: |
Line 7: |
| | == Schedule for Spring Semester 2007 == | | == Schedule for Spring Semester 2007 == |
| | | | |
| − | === January 16, 2007 === | + | === Tuesday, August 28, 2007 === |
| | :Organizational meeting, BioPharm 3rd. floor fishbowl, 4pm | | :Organizational meeting, BioPharm 3rd. floor fishbowl, 4pm |
| − |
| |
| − | === January 23, 2007 ===
| |
| − | :Smythe, A.B., M.J. Sanderson, and S.A. Nadler. 2006. Nematode Small Subunit Phylogeny Correlates with Alignment Parameters. ''Systematic Biology'' 55(6): 972-992.{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Smythe_Sanderson_Nadler_2006_SystBiol_55_972-992.pdf }}
| |
| − |
| |
| − | :Note from Carrie: Please note that this is DIFFERENT than the paper we decided on at Tuesday's organizational meeting.
| |
| − | :This issue of Sys. Bio. is not yet available online therefore I will make a copy and put it in the EEB office. Those with a hard copy subscription of Sys. Bio. should have this issue. Note: for those with copies, Figures 3 and 8 should be in color.
| |
| − |
| |
| − | === January 30, 2007 ===
| |
| − | :Kjer, K. M., J. J. Gillespie and K. A. Ober. 2007. Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment. ''Systematic Biology'' 56: 1-14. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Kjer_Gillespie_Ober_2007_SystBiol.pdf}}
| |
| − |
| |
| − | === February 6, 2007 ===
| |
| − | :Cancelled due to overlap with Rettenmeyer presentation
| |
| − |
| |
| − | === February 13, 2007 ===
| |
| − | :Lutzoni, F., P. Wagner, V. Reeb, and S. Zoller. 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. ''Sytematic Biology'' 49: 628-651. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lutzoni_etal_2000_SystBiol_49_628-651.pdf}}
| |
| − |
| |
| − | === February 20, 2007 ===
| |
| − | :Huyse, T., and F. Volckaert. 2005. Comparing Host and Parasite Phylogenies: ''Gyrodactylus'' Flatworms Jumping from Goby to Goby. ''Systematic Biology'' 54(5): 710-718. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Huyse_Volckaert_2005_SystBiol_54_710-718_opt.pdf}}
| |
| − |
| |
| − | === February 27, 2007 ===
| |
| − | There are two papers for this week's discussion. Read the Science paper first to get an overview of the whole quadripartite symbiosis; the Gerardo paper focuses only on the two fungal components.
| |
| − | :Currie, C. R., B. Wong, A. E. Stuart, T. R. Schultz, S. A. Rehner, U. G. Mueller, G.-H. Sung, J. W. Spatafora and N. A. Straus. 2003. Ancient tripartite coevolution in the attine ant-microbe symbiosis. Science 299: 386-388. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Currie_etal_Science_299_386-388.pdf}}
| |
| − | :Gerardo, N. M., U. G. Mueller, and C. R. Currie. 2006. Complex host-pathogen coevolution in the ''Apterostigma'' fungus-growing ant-microbe symbiosis. BMC Evolutionary Biology 6:88. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Gerardo_Mueller_Currie_2006_BMCEvolBiol_6_88.pdf}}
| |
| − |
| |
| − | === March 13, 2007 ===
| |
| − | :Diekmann, O. E., J. L. Olsen, W. T. Stam, R. P. M. Bak. 2003. Genetic variation within ''Symbiodinium'' clade B from the coral genus ''Madracis'' in the Caribbean (Netherlands Antilles). Coral Reefs. 22: 29–33. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Diekmann_etal_2003_CoralReefs_22_29-33.pdf}}
| |
| − | :M. J. H. van Oppen. 2004. Mode of zooxanthella transmission does not affect zooxanthella diversity in acroporid corals. Marine Biology. 144: 1–7. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/vanOppen_2004_MarineBiol_144_1-7.pdf}}
| |
| − |
| |
| − | === March 20, 2007 ===
| |
| − | :Ruano-Rubio, V., and Fares, M. A. 2007. Artifactual phylogenies caused by correlated distribution of substitution rates among sites and lineages: the Good, the Bad, and the Ugly. Systematic Biology 56: 68-82. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/RuanoRubio_Fares_2007_SystBiol_56_68-82.pdf}}
| |
| − |
| |
| − | === March 27, 2007 ===
| |
| − | :Mooers, A. O., and S. B. Heard. 1997. Inferring evolutionary process from phylogenetic tree shape. The Quarterly Review of Biology 72: 31-54. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Mooers_Heard_1997_QuartRevBiol_72_31-54.pdf}}
| |
| − |
| |
| − | === April 3, 2007 ===
| |
| − | :Kelchner, S. A., and M. A. Thomas. 2006. Model use in phylogenetics: nine key questions. Trends in Ecology and Evolution 22: 87-94. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Kelchner_Thomas_2006_TREE_22_87-94.pdf}}
| |
| − |
| |
| − | === April 10, 2007 ===
| |
| − | :Leschen, R. A. B., and T. R. Buckley. 2007. Multistate characters and diet shifts: evolution of Erotylidae (Coleoptera). Systematic Biology 56: 97-112. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Leschen_Buckley_2007_SystBiol_56_97-112.pdf}}
| |
| − |
| |
| − | === April 17, 2007 ===
| |
| − | :Yesson, C., and A. Culham. 2006. Phyloclimatic modeling: combining phylogenetics and bioclimatic modeling. Systematic Biology 55(5): 785-802. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Yesson_Culham_2006_SystBiol_55_785-802.pdf}}
| |
| − |
| |
| − | === April 24, 2007 (new time: 3pm) ===
| |
| − | :Ree, R. H. 2005. Detecting the historical signature of key innovations using stochastic models of character evolution and cladogenesis. Evolution 59(2): 257-265. {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Ree_2005_Evolution_59_257-265.pdf}}
| |
| | | | |
| | == Information about joining and using the email list == | | == Information about joining and using the email list == |
This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut. This (Spring, 2007) semester, we are meeting each Tuesday at 4pm in the BioPharm 3rd. floor "fishbowl" conference room.
The papers for discussion are available as PDF files, but to keep us from getting into hot water with the journals involved, a username and password are required for access. If you have forgotten the username/password, please contact Paul Lewis.
Note: it is best to avoid appending your signature to this message, as the majordomo program may try to interpret parts of your signature to be commands.
