Difference between revisions of "Systematics Seminar"

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This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  
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This is the home page of the UConn EEB department's Co-evolution Seminar, taking the place of the Systematics Seminar this semester (EEB 6486). This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  
  
 
[[Systematics Listserv|Click here for information about joining and using the Systematics email list]]
 
[[Systematics Listserv|Click here for information about joining and using the Systematics email list]]
  
 
== Meeting time and place ==
 
== Meeting time and place ==
We are meeting this semester in the '''Bamford Room (TLS 171B) Tuesdays 4-5pm'''.
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For the Spring 2015 semester, we are meeting in the '''Bamford Room (TLS 171B) Day/time TBD'''
  
== Theme for Fall Semester 2010 ==
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=== Topics ===
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This seminar will be split between class meetings that emphasize phylogenetic underpinnings, tree comparisons, and reconciliation methods, with those focused on the evolutionary processes underlying co-evolutionary phenomena (as well as the forces and circumstances that, more often than not, prevent it from occurring). And while parasites will figure large in our readings and discussions, we will also explore insect-plant co-evolution, endosymbionts and other mutualisms, mimicry, and others.  
The theme for this semester will be decided at the organizational meeting.
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== Schedule for Fall Semester 2010 ==
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=== Tuesday, 20 January 2015 ===
'''Note: the papers linked here require a user name and password to access.''' If you have forgotten the user name and/or password, contact [mailto:paul.lewis@uconn.edu Paul Lewis]. If you want to upload a PDF file for an upcoming discussion, use the [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/upload.html Systematics Seminar PDF upload form]. Uploading PDFs requires the same user name and password as viewing PDFs.
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At this meeting we will discuss possible themes for this semester's seminar, and determine the meeting time
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<br>
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=== Tuesday, 27 January 2015 ===
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Futuyma%20and%20Slatkin%201983.pdf}}Futuyma and Slatkin, 1983. Coevolution.
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Janzen%201980.pdf}}Janzen, 1980. What is coevolution?
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Ehrlich%20and%20Raven%201964.pdf}}Ehrlich and Raven, 1964. Butterflies and Plants: A Study in Coevolution.
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=== Tuesday, August 31, 2010: ===
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=== Monday, 8 September 2014 ===
Organizational meeting.
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=== Tuesday, September 07, 2010: ===
 
Discussion leader: [[Chris Owen]]<br/>
 
This week we will take a look at a new method to infer phylogeographic history on a continuous landscape.
 
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202010%20MBE.pdf}}Lemey et al. 2010 MBE.pdf
 
  
=== Tuesday, September 14, 2010: ===
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=== Monday, 15 September 2014 ===
Discussion leader: [[Geert]]<br/>
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This paper uses the previous version of the model discussed by Chris last week.
 
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/a/a1/Chapter4_ThesisFinalMarske.pdf}}Chapter4 Marske Thesis.pdf
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=== Monday, 22 September 2014 ===
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Marske%20Thesis%20Refereces.pdf}}Marske Thesis References.pdf
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=== Tuesday, September 21, 2010: ===
 
Discussion leader: [[Marc Suchard]]<br/>
 
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202009%20bayesian%20phylogeo%20sm.pdf}}Lemey et al. 2009 bayesian phylogeo sm.pdf
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=== Monday, 29 September 2014 ===
  
=== Tuesday, September 28, 2010: ===
 
Discussion leader:JCarlos Villarreal
 
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/smith2009.biogeography.opt4.pdf}} Smith, S. A. 2009. Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographic analysis of the Northern Hemisphere plant clade Caprifolieae. Journal of Biogeography. http://blackrim.org/projects/biogeography
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=== Monday, 6 October 2014 ===
  
=== Tuesday, October 5, 2010: ===
 
Discussion leader:
 
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemmon%20et%20al.%202009%20missing%20data.pdf}}Lemmon et al. 2009 missing data.pdf
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=== Monday, 13 October 2014 ===
  
=== Tuesday, October 12, 2010: ===
 
Discussion leader: Elizabeth Timpe<br>
 
  
::{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Wiens_Moen_JSE_2008.pdf}}Wiens_Moen_JSE_2008.pdf
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=== Monday, 20 October 2014 ===
  
=== Tuesday, October 19, 2010: ===
 
Discussion leader: Beth Wade<br>
 
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Waters%202010%20SysBio%20gene%20tree%20vs%20spp%20tree.pdf}}Waters 2010 SysBio gene tree vs spp tree.pdf
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=== Monday, 27 October 2014 ===
  
=== Tuesday, October 26, 2010: ===
 
Discussion leader: Daniel Fan<br>
 
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/evansetal2009.pdf}}Evans et al. 2009.pdf
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=== Monday, 3 November 2014 ===
  
  
=== Tuesday, November 9, 2010: ===
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=== Monday, 10 November 2014 ===
Discussion leader: Cory Merow<br>
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  :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20DDI%20final_single.pdf}}Elith et al 2011 DDI final_single.pdf <br>
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Appendices<br>
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=== Monday, 17 November 2014 ===
  :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20online%20appendices%20final.pdf}}Elith et al 2011 online appendices final.pdf <br>
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Sample data files for case study 2. I won't be running through this, but in case you're interested.... <br>
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al_data%20for%20CaseStudy2.zip}}Elith et al_data for CaseStudy2.zip
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=== Monday, 1 December 2014===
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== Past Systematics Seminars ==
 
== Past Systematics Seminars ==
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* [[Systematics Seminar Fall 2014|Fall 2014]]
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* [[Systematics Seminar Fall 2013|Fall 2013]]
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* [[Systematics Seminar Spring 2012|Spring 2012]]
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* [[Systematics Seminar Fall 2011|Fall 2011]]
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* [http://darwin.eeb.uconn.edu/wiki/index.php/Statistical_phylogeography  Spring 2011] (we joined Kent Holsinger's seminar on Statistical Phylogeography this semester)
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* [[Systematics Seminar Fall 2010|Fall 2010]]
 
* [[Systematics Seminar Spring 2010|Spring 2010]]
 
* [[Systematics Seminar Spring 2010|Spring 2010]]
 
* [[Systematics Seminar Fall 2009|Fall 2009]]
 
* [[Systematics Seminar Fall 2009|Fall 2009]]

Revision as of 19:25, 23 January 2015

This is the home page of the UConn EEB department's Co-evolution Seminar, taking the place of the Systematics Seminar this semester (EEB 6486). This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.

Click here for information about joining and using the Systematics email list

Meeting time and place

For the Spring 2015 semester, we are meeting in the Bamford Room (TLS 171B) Day/time TBD

Topics

This seminar will be split between class meetings that emphasize phylogenetic underpinnings, tree comparisons, and reconciliation methods, with those focused on the evolutionary processes underlying co-evolutionary phenomena (as well as the forces and circumstances that, more often than not, prevent it from occurring). And while parasites will figure large in our readings and discussions, we will also explore insect-plant co-evolution, endosymbionts and other mutualisms, mimicry, and others.

Tuesday, 20 January 2015

At this meeting we will discuss possible themes for this semester's seminar, and determine the meeting time

Tuesday, 27 January 2015

Pdficon small.gifFutuyma and Slatkin, 1983. Coevolution.
Pdficon small.gifJanzen, 1980. What is coevolution?
Pdficon small.gifEhrlich and Raven, 1964. Butterflies and Plants: A Study in Coevolution.

Past Systematics Seminars