Difference between revisions of "Systematics Seminar"

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This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  
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This is the home page of the UConn EEB department's Systematics Seminar (EEB 6486). This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  
  
 
[[Systematics Listserv|Click here for information about joining and using the Systematics email list]]
 
[[Systematics Listserv|Click here for information about joining and using the Systematics email list]]
  
 
== Meeting time and place ==
 
== Meeting time and place ==
We are meeting this semester in the '''Bamford Room (TLS 171B) Tuesdays 4-5pm'''.
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For the Fall 2014 semester, we are meeting in the '''Bamford Room (TLS 171B) Mondays 2-3pm'''
  
== Theme for Fall Semester 2010 ==
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=== Monday, 25 August 2014 ===
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At this meeting we will discuss possible themes for this semester's seminar:
The theme for this semester will be decided at the organizational meeting.
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== Schedule for Fall Semester 2010 ==
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=== Monday, 1 September 2014 ===
'''Note: the papers linked here require a user name and password to access.''' If you have forgotten the user name and/or password, contact [mailto:paul.lewis@uconn.edu Paul Lewis]. If you want to upload a PDF file for an upcoming discussion, use the [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/upload.html Systematics Seminar PDF upload form]. Uploading PDFs requires the same user name and password as viewing PDFs.
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Labor Day, no meeting
  
=== Tuesday, August 31, 2010: ===
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=== Monday, 8 September 2014 ===
Organizational meeting.
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=== Tuesday, September 07, 2010: ===
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=== Monday, 15 September 2014 ===
Discussion leader: [[Chris Owen]]<br/>
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This week we will take a look at a new method to infer phylogeographic history on a continuous landscape.
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202010%20MBE.pdf}}Lemey et al. 2010 MBE.pdf
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=== Tuesday, September 14, 2010: ===
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=== Monday, 22 September 2014 ===
Discussion leader: [[Geert]]<br/>
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This paper uses the previous version of the model discussed by Chris last week.
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=== Monday, 29 September 2014 ===
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/eebedia/images/a/a1/Chapter4_ThesisFinalMarske.pdf}}Chapter4 Marske Thesis.pdf
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=== Monday, 6 October 2014 ===
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Marske%20Thesis%20Refereces.pdf}}Marske Thesis References.pdf
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=== Tuesday, September 21, 2010: ===
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=== Monday, 13 October 2014 ===
Discussion leader: [[Marc Suchard]]<br/>
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemey%20et%20al.%202009%20bayesian%20phylogeo%20sm.pdf}}Lemey et al. 2009 bayesian phylogeo sm.pdf
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=== Monday, 20 October 2014 ===
  
=== Tuesday, September 28, 2010: ===
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=== Monday, 27 October 2014 ===
Discussion leader:JCarlos Villarreal
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/smith2009.biogeography.opt4.pdf}} Smith, S. A. 2009. Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographic analysis of the Northern Hemisphere plant clade Caprifolieae. Journal of Biogeography. http://blackrim.org/projects/biogeography
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=== Monday, 3 November 2014 ===
  
=== Tuesday, October 5, 2010: ===
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=== Monday, 10 November 2014 ===
Discussion leader:
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemmon%20et%20al.%202009%20missing%20data.pdf}}Lemmon et al. 2009 missing data.pdf
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=== Monday, 17 November 2014 ===
  
=== Tuesday, October 12, 2010: ===
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=== Monday, 1 December 2014===
Discussion leader: Elizabeth Timpe<br>
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::{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Wiens_Moen_JSE_2008.pdf}}Wiens_Moen_JSE_2008.pdf
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=== Tuesday, October 19, 2010: ===
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Discussion leader: Beth Wade<br>
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Waters%202010%20SysBio%20gene%20tree%20vs%20spp%20tree.pdf}}Waters 2010 SysBio gene tree vs spp tree.pdf
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=== Tuesday, October 26, 2010: ===
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Discussion leader: Daniel Fan<br>
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/evansetal2009.pdf}}Evans et al. 2009.pdf
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=== Tuesday, November 9, 2010: ===
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Discussion leader: Cory Merow<br>
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  :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20DDI%20final_single.pdf}}Elith et al 2011 DDI final_single.pdf
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Appendices<br>
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  :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al%202011%20online%20appendices%20final.pdf}}Elith et al 2011 online appendices final.pdf
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Sample data files for case study 2. I won't be running through this, but in case you're interested.... <br>
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Elith%20et%20al_data%20for%20CaseStudy2.zip}}Elith et al_data for CaseStudy2.zip
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== Past Systematics Seminars ==
 
== Past Systematics Seminars ==
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* [[Systematics Seminar Fall 2013|Fall 2013]]
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* [[Systematics Seminar Spring 2012|Spring 2012]]
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* [[Systematics Seminar Fall 2011|Fall 2011]]
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* [http://darwin.eeb.uconn.edu/wiki/index.php/Statistical_phylogeography  Spring 2011] (we joined Kent Holsinger's seminar on Statistical Phylogeography this semester)
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* [[Systematics Seminar Fall 2010|Fall 2010]]
 
* [[Systematics Seminar Spring 2010|Spring 2010]]
 
* [[Systematics Seminar Spring 2010|Spring 2010]]
 
* [[Systematics Seminar Fall 2009|Fall 2009]]
 
* [[Systematics Seminar Fall 2009|Fall 2009]]

Revision as of 11:13, 22 August 2014

This is the home page of the UConn EEB department's Systematics Seminar (EEB 6486). This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.

Click here for information about joining and using the Systematics email list

Meeting time and place

For the Fall 2014 semester, we are meeting in the Bamford Room (TLS 171B) Mondays 2-3pm

Monday, 25 August 2014

At this meeting we will discuss possible themes for this semester's seminar:

Monday, 1 September 2014

Labor Day, no meeting

Monday, 8 September 2014

Monday, 15 September 2014

Monday, 22 September 2014

Monday, 29 September 2014

Monday, 6 October 2014

Monday, 13 October 2014

Monday, 20 October 2014

Monday, 27 October 2014

Monday, 3 November 2014

Monday, 10 November 2014

Monday, 17 November 2014

Monday, 1 December 2014

Past Systematics Seminars