Difference between revisions of "Systematics Seminar"

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This is the home page of the UConn EEB department's Systematics Seminar. This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  
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This is the home page of the UConn EEB department's Systematics Seminar (EEB 6486). This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.  
  
 
[[Systematics Listserv|Click here for information about joining and using the Systematics email list]]
 
[[Systematics Listserv|Click here for information about joining and using the Systematics email list]]
  
 
== Meeting time and place ==
 
== Meeting time and place ==
We are meeting this semester in the '''Bamford Room (TLS 171B) Tuesdays 4-5pm'''.
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For the Fall 2014 semester, we are meeting in the '''Bamford Room (TLS 171B) Mondays 2-3pm'''
  
== Theme for Fall Semester 2009 ==
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=== Monday, 25 August 2014 ===
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At this meeting we will discuss possible themes for this semester's seminar:
This semester we will focus on speciation and hybridization, then transition into phylogeography/ historical biogeography. Random papers/ themes, however, are welcomed.
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== Schedule for Fall Semester 2009 ==
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=== Monday, 1 September 2014 ===
'''Note: the papers linked here require a user name and password to access.''' If you have forgotten the user name and/or password, contact [mailto:paul.lewis@uconn.edu Paul Lewis]. If you want to upload a PDF file for an upcoming discussion, use the [http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/upload.html Systematics Seminar PDF upload form]. Uploading PDFs requires the same user name and password as viewing PDFs.
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Labor Day, no meeting
  
=== Tuesday, September 8th, 2009: ===
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=== Monday, 8 September 2014 ===
Discussion leader: [[Elizabeth Wade]]
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Bossu_Near_2009_SysBio.pdf}}Bossu_Near_2009_SysBio.pdf
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=== Monday, 15 September 2014 ===
  
=== Tuesday, September 15th, 2009 ===
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=== Monday, 22 September 2014 ===
  
Discussion Leader: Elizabeth Timpe
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=== Monday, 29 September 2014 ===
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Bonett%20and%20Chippindale%202004.pdf}}Bonett and Chippindale 2004.pdf
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=== Monday, 6 October 2014 ===
  
=== Tuesday, September 22nd, 2009 ===
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=== Monday, 13 October 2014 ===
  
Discussion leaders: Nic Tippery and Dave Wagner
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=== Monday, 20 October 2014 ===
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Whitfield-etal-2006_Apis-biogeog.pdf}}Whitfield et al. 2006. Thrice Out of Africa: Ancient and Recent Expansions of the Honey Bee, ''Apis mellifera''. ''Science'' 314: 642-645.
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=== Monday, 27 October 2014 ===
  
http://www.sciencemag.org/cgi/content/abstract/314/5799/642
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=== Monday, 3 November 2014 ===
  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Albrecht-etal-2007_Dreissena-native.pdf}}Albrecht et al. 2007. Invaders or endemics? Molecular phylogenetics, biogeography and systematics of ''Dreissena'' in the Balkans. ''Freshwater Biology'' 52: 1525-1536.
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=== Monday, 10 November 2014 ===
  
http://www3.interscience.wiley.com/journal/117962459/abstract
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=== Monday, 17 November 2014 ===
  
=== Tuesday, September 29th, 2009 ===
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=== Monday, 1 December 2014===
 
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Discussion leader: Chris Owen
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Clark_et_al-2008-SystBio.pdf}}Clark_et_al-2008-SystBio.pdf
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=== Tuesday, October 6th, 2009 ===
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Discussion leader: Daniel Fan
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We will continue talking about Dispersal-Extinction-Cladogesis (DEC) model this week. In 2005, Ree et al. proposed the initial version of DEC although this approach was not named at that time. In 2008, Ree and Smith developed it and published a paper in Sys. Bio., which might be thought as the second version. The paper we will read is about the third version of DEC, likelihood with fossil, and they call it DEC*.
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Moore_2009_.pdf}}Moore et al. 2009. Incorporating Fossil Data in Biogeographic Inference: A Likelihood Approach.
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=== Tuesday, October 13th, 2009 ===
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Juan Carlos Villarreal
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Santos.etal.2009.Plosbiolo.pdf}}Santos.etal.2009.Plosbiolo.pdf
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I would recommend to check Figure S6 (supplements are available online).
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http://www.plosbiology.org/article/info:doi%2F10.1371%2Fjournal.pbio.1000056;jsessionid=697A5A8835708B33E83085CE4729FB59
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The next paper is optional. It talks about priors for molecular dating analyses. Simon Ho has published a more recent paper on the topic, this is shorter/simpler.
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/ho.2007.j.avianbiol..pdf}}ho.2007.j.avianbiol..pdf
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=== Tuesday, October 20th, 2009 ===
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Discussion Leader: Roberta
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{{pdf|http://www.bioone.org/doi/abs/10.1111/j.1558-5646.2008.00566.x}}
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Hurt et al. 2009 A MULTILOCUS TEST OF SIMULTANEOUS DIVERGENCE ACROSS THE ISTHMUS OF PANAMA USING SNAPPING SHRIMP IN THE GENUS ALPHEUS
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=== Tuesday, October 27th, 2009 ===
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Discussion leader: Geert Goemans
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Himes%20et%20al%202008.pdf}}Himes et al 2008.pdf
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=== Tuesday, November 3rd, 2009 ===
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Discussion leader: Nic Tippery
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Nielsen-Beaumont-2009_phylogeog.pdf}}Nielsen, R. and M. A. Beaumont. 2009. Statistical inferences in phylogeography. Molecular Ecology 18: 1034-1047.
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http://www3.interscience.wiley.com/journal/121681049/abstract?CRETRY=1&SRETRY=0
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=== Tuesday, November 10th, 2009 ===
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Discussion Leader: Beth Wade
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/Lemmon%20Lemmon%202008%20Phylomapper.pdf}}Lemmon Lemmon 2008 Phylomapper.pdf
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=== Tuesday, November 17th, 2009 ===
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Discussion leader: Karolina Fučíková
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:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematicsseminar/restricted/PNAS%20Brawley%202009.pdf}} Brawley et al. 2009.pdf
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=== Tuesday, December 1st, 2009 ===
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Discussion Leader: Dave Wagner
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=== Tuesday, December 8th, 2009 ===
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[[#top|Back to top]]
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== Past Systematics Seminars ==
 
== Past Systematics Seminars ==
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* [[Systematics Seminar Fall 2013|Fall 2013]]
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* [[Systematics Seminar Spring 2012|Spring 2012]]
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* [[Systematics Seminar Fall 2011|Fall 2011]]
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* [http://darwin.eeb.uconn.edu/wiki/index.php/Statistical_phylogeography  Spring 2011] (we joined Kent Holsinger's seminar on Statistical Phylogeography this semester)
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* [[Systematics Seminar Fall 2010|Fall 2010]]
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* [[Systematics Seminar Spring 2010|Spring 2010]]
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* [[Systematics Seminar Fall 2009|Fall 2009]]
 
* [[Systematics Seminar Fall 2008|Fall 2008]]
 
* [[Systematics Seminar Fall 2008|Fall 2008]]
 
* [[Systematics Seminar Spring 2008|Spring 2008]]
 
* [[Systematics Seminar Spring 2008|Spring 2008]]

Revision as of 11:13, 22 August 2014

This is the home page of the UConn EEB department's Systematics Seminar (EEB 6486). This is a graduate seminar devoted to issues of interest to graduate students and faculty who make up the systematics program at the University of Connecticut.

Click here for information about joining and using the Systematics email list

Meeting time and place

For the Fall 2014 semester, we are meeting in the Bamford Room (TLS 171B) Mondays 2-3pm

Monday, 25 August 2014

At this meeting we will discuss possible themes for this semester's seminar:

Monday, 1 September 2014

Labor Day, no meeting

Monday, 8 September 2014

Monday, 15 September 2014

Monday, 22 September 2014

Monday, 29 September 2014

Monday, 6 October 2014

Monday, 13 October 2014

Monday, 20 October 2014

Monday, 27 October 2014

Monday, 3 November 2014

Monday, 10 November 2014

Monday, 17 November 2014

Monday, 1 December 2014

Past Systematics Seminars