User contributions
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- 18:58, 25 February 2020 (diff | hist) . . (+1,371) . . Phylogenetics: HyPhy Lab
- 18:44, 25 February 2020 (diff | hist) . . (+1,502) . . Phylogenetics: HyPhy Lab (→Goal)
- 20:54, 24 February 2020 (diff | hist) . . (-6) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 20:41, 24 February 2020 (diff | hist) . . (+1) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 20:40, 24 February 2020 (diff | hist) . . (+24) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 20:31, 24 February 2020 (diff | hist) . . (+535) . . Phylogenetics: HyPhy Lab (→Final exercise)
- 20:25, 24 February 2020 (diff | hist) . . (+4,093) . . Phylogenetics: HyPhy Lab (→Ready to simulate!)
- 19:56, 24 February 2020 (diff | hist) . . (+1) . . Phylogenetics: HyPhy Lab (→Ready to simulate!)
- 19:56, 24 February 2020 (diff | hist) . . (+2,995) . . Phylogenetics: HyPhy Lab (→Fixing up edge lengths)
- 19:35, 24 February 2020 (diff | hist) . . (-685) . . Phylogenetics: HyPhy Lab (→Fixing up edge lengths)
- 19:23, 24 February 2020 (diff | hist) . . (+1,616) . . Phylogenetics: HyPhy Lab (→Fixing up edge lengths)
- 19:11, 24 February 2020 (diff | hist) . . (+10) . . Phylogenetics: HyPhy Lab (→Define the HKY85 rate matrix)
- 19:11, 24 February 2020 (diff | hist) . . (+13) . . Phylogenetics: HyPhy Lab (→Define the HKY85 rate matrix)
- 19:09, 24 February 2020 (diff | hist) . . (+1,499) . . Phylogenetics: HyPhy Lab (→Don't get too comfortable just yet)
- 18:53, 24 February 2020 (diff | hist) . . (-2) . . Phylogenetics: HyPhy Lab (→Don't get too comfortable just yet)
- 18:52, 24 February 2020 (diff | hist) . . (+1,355) . . Phylogenetics: HyPhy Lab (→Don't get too comfortable just yet)
- 18:35, 24 February 2020 (diff | hist) . . (+738) . . Phylogenetics: HyPhy Lab (→Creating the second model)
- 18:30, 24 February 2020 (diff | hist) . . (+1,774) . . Phylogenetics: HyPhy Lab (→Create a tree representing the null hypothesis)
- 18:17, 24 February 2020 (diff | hist) . . (+16) . . Phylogenetics: HyPhy Lab
- 18:16, 24 February 2020 (diff | hist) . . (+2,775) . . Phylogenetics: HyPhy Lab
- 17:38, 24 February 2020 (diff | hist) . . (+624) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 17:32, 24 February 2020 (diff | hist) . . (+8) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 17:25, 24 February 2020 (diff | hist) . . (+26) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 17:18, 24 February 2020 (diff | hist) . . (+65) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 15:26, 24 February 2020 (diff | hist) . . (+1,797) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 14:50, 24 February 2020 (diff | hist) . . (+323) . . Phylogenetics: HyPhy Lab (→Creating the HyPhy batch file)
- 14:48, 24 February 2020 (diff | hist) . . (-17,448) . . Phylogenetics: HyPhy Lab
- 14:24, 24 February 2020 (diff | hist) . . (+27) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 14:19, 24 February 2020 (diff | hist) . . (+2) . . Phylogenetics: HyPhy Lab (→Loading modules needed)
- 14:19, 24 February 2020 (diff | hist) . . (+9) . . Phylogenetics: HyPhy Lab (→HyPhy)
- 14:18, 24 February 2020 (diff | hist) . . (-19) . . Phylogenetics: HyPhy Lab (→Login to Xanadu)
- 03:03, 24 February 2020 (diff | hist) . . (+88) . . Phylogenetics: HyPhy Lab
- 15:38, 17 February 2020 (diff | hist) . . (+165) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 14:56, 17 February 2020 (diff | hist) . . (-44) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 14:37, 17 February 2020 (diff | hist) . . (-15) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 14:33, 17 February 2020 (diff | hist) . . (+258) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 14:26, 17 February 2020 (diff | hist) . . (+92) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:46, 17 February 2020 (diff | hist) . . (+16) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:42, 17 February 2020 (diff | hist) . . (-2) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:41, 17 February 2020 (diff | hist) . . (+6) . . Phylogenetics: Simulating sequence data (→Saving Simulated Data)
- 02:24, 17 February 2020 (diff | hist) . . (-70) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:23, 17 February 2020 (diff | hist) . . (+239) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 02:20, 17 February 2020 (diff | hist) . . (-103) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:19, 17 February 2020 (diff | hist) . . (+61) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 02:13, 17 February 2020 (diff | hist) . . (-96) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:09, 17 February 2020 (diff | hist) . . (-35) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 02:07, 17 February 2020 (diff | hist) . . (-188) . . Phylogenetics: Simulating sequence data (→Simulation Template)
- 01:56, 17 February 2020 (diff | hist) . . (-115) . . Phylogenetics: Simulating sequence data (→Enter the Felsenstein Zone)
- 01:56, 17 February 2020 (diff | hist) . . (-27) . . Phylogenetics: Simulating sequence data (→Execute the NEXUS File)
- 01:36, 17 February 2020 (diff | hist) . . (+308) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 01:29, 17 February 2020 (diff | hist) . . (+52) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 01:19, 17 February 2020 (diff | hist) . . (+80) . . Phylogenetics: Simulating sequence data (→Strimmer and Rambaut (2002) Study)
- 13:12, 10 February 2020 (diff | hist) . . (+3,352) . . Phylogenetics: Using IQ-TREE for multilocus likelihood analyses (→Getting started) (current)
- 12:40, 10 February 2020 (diff | hist) . . (+1,257) . . N Phylogenetics: Using IQ-TREE for multilocus likelihood analyses (Created page with "{| border="0" |- |rowspan="2" valign="top"|200px |<span style="font-size: x-large">[http://phylogeny.uconn.edu/courses/ EEB 5349: Phylogenetics]</span>...")
- 19:38, 3 February 2020 (diff | hist) . . (+63) . . Phylogenetics: Likelihood Lab (→Likelihood ratio tests) (current)
- 19:37, 3 February 2020 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→Determining significance)
- 19:32, 3 February 2020 (diff | hist) . . (-59) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:13, 3 February 2020 (diff | hist) . . (+388) . . Phylogenetics: Likelihood Lab (→What parameters make the fit of the model significantly better?)
- 19:08, 3 February 2020 (diff | hist) . . (+9) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:04, 3 February 2020 (diff | hist) . . (+306) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 19:03, 3 February 2020 (diff | hist) . . (+189) . . Phylogenetics: Likelihood Lab (→Estimate the heterogeneity in rates among sites)
- 18:59, 3 February 2020 (diff | hist) . . (+6) . . Phylogenetics: Likelihood Lab (→Estimate the proportion of invariable sites)
- 18:58, 3 February 2020 (diff | hist) . . (+302) . . Phylogenetics: Likelihood Lab (→Estimate the proportion of invariable sites)
- 18:53, 3 February 2020 (diff | hist) . . (+287) . . Phylogenetics: Likelihood Lab (→Estimate transition/transversion bias)
- 18:48, 3 February 2020 (diff | hist) . . (+250) . . Phylogenetics: Likelihood Lab (→Estimate base frequencies)
- 18:45, 3 February 2020 (diff | hist) . . (+190) . . Phylogenetics: Likelihood Lab (→Obtain the maximum likelihood tree under the F81 model)
- 18:19, 3 February 2020 (diff | hist) . . (-135) . . Phylogenetics: Likelihood Lab
- 00:33, 3 February 2020 (diff | hist) . . (-116) . . Phylogenetics: Python Primer (current)
- 20:18, 28 January 2020 (diff | hist) . . (-60) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search) (current)
- 19:49, 28 January 2020 (diff | hist) . . (+33) . . Phylogenetics: Searching Lab (→Exercise to turn in before the end of lab)
- 19:48, 28 January 2020 (diff | hist) . . (-1) . . Phylogenetics: Searching Lab (→Exercise to turn in before the end of lab)
- 19:48, 28 January 2020 (diff | hist) . . (+137) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:56, 28 January 2020 (diff | hist) . . (+119) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:47, 28 January 2020 (diff | hist) . . (+26) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 18:31, 28 January 2020 (diff | hist) . . (+579) . . Phylogenetics: Searching Lab
- 17:56, 28 January 2020 (diff | hist) . . (+45) . . Phylogenetics: Searching Lab
- 23:03, 16 January 2020 (diff | hist) . . (-131) . . Phylogenetics: Introduction to PAUP* (current)
- 19:56, 16 January 2020 (diff | hist) . . (+293) . . Phylogenetics: Xanadu Cluster (→Man pages)
- 19:53, 16 January 2020 (diff | hist) . . (+87) . . Phylogenetics: Xanadu Cluster (→Delete junk.txt using the rm command)
- 19:51, 16 January 2020 (diff | hist) . . (+13) . . Phylogenetics: Xanadu Cluster (→Why both junk.txt and algae.output.txt?)
- 19:51, 16 January 2020 (diff | hist) . . (-28) . . Phylogenetics: Xanadu Cluster (→Why both junk.txt and algae.output.txt?)
- 19:48, 16 January 2020 (diff | hist) . . (+230) . . Phylogenetics: Xanadu Cluster (→Starting a PAUP* analysis)
- 19:25, 16 January 2020 (diff | hist) . . (-1) . . Phylogenetics: Xanadu Cluster (→A few more UNIX commands)
- 19:21, 16 January 2020 (diff | hist) . . (-33) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:20, 16 January 2020 (diff | hist) . . (+373) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:12, 16 January 2020 (diff | hist) . . (+208) . . Phylogenetics: Xanadu Cluster (→SSH)
- 19:10, 16 January 2020 (diff | hist) . . (-29) . . Phylogenetics: Xanadu Cluster (→Using scp to upload the algae.nex data file)
- 19:09, 16 January 2020 (diff | hist) . . (0) . . Phylogenetics: Xanadu Cluster (→Using Cyberduck to upload the algae.nex data file)
- 19:08, 16 January 2020 (diff | hist) . . (0) . . N File:Cyberduck-bookmark-xanadu.png (current)
- 18:36, 16 January 2020 (diff | hist) . . (+13) . . Phylogenetics: Xanadu Cluster (→Create the gopaup file)
- 18:36, 16 January 2020 (diff | hist) . . (+85) . . Phylogenetics: Xanadu Cluster (→Create the gopaup file)
- 17:44, 16 January 2020 (diff | hist) . . (+1) . . Phylogenetics: Xanadu Cluster (→rm command: cleaning up)
- 17:44, 16 January 2020 (diff | hist) . . (-63) . . Phylogenetics: Xanadu Cluster (→rm command: cleaning up)
- 17:36, 16 January 2020 (diff | hist) . . (+20) . . Phylogenetics: Xanadu Cluster (→Using Cyberduck to upload the algae.nex data file)
- 17:30, 16 January 2020 (diff | hist) . . (-23) . . Phylogenetics: Xanadu Cluster
- 17:03, 16 January 2020 (diff | hist) . . (+70) . . Phylogenetics: Xanadu Cluster (→If you use MacOS 10.x...)
- 17:02, 16 January 2020 (diff | hist) . . (+837) . . Phylogenetics: Xanadu Cluster
- 03:33, 16 January 2020 (diff | hist) . . (-83) . . Phylogenetics: Xanadu Cluster
- 04:01, 15 January 2020 (diff | hist) . . (+24,066) . . N Phylogenetics: Xanadu Cluster (Created page with "{| border="0" |- |rowspan="2" valign="top"|150px |<span style="font-size: x-large">[http://phylogeny.uconn.edu/courses/ EEB 5349: Phylogenetics]</span>...")
- 01:47, 24 August 2019 (diff | hist) . . (+9,394) . . N EEB 3895 Medical Parasitology Fall 2019 (Created page with "right == EEB 3895 Medical Parasitology Fall 2019== <span style="font-size: medium"><font color="#C70039"> '''Course description'''</font color="#...")
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