User contributions
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- 01:31, 25 February 2014 (diff | hist) . . (+42) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→50.screen.log)
- 01:30, 25 February 2014 (diff | hist) . . (+446) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→50.screen.log)
- 01:08, 25 February 2014 (diff | hist) . . (+29) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→50.screen.log)
- 01:01, 25 February 2014 (diff | hist) . . (+137) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→50.screen.log)
- 00:52, 25 February 2014 (diff | hist) . . (-1) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Submit the job)
- 00:45, 25 February 2014 (diff | hist) . . (+61) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Submit the job)
- 00:43, 25 February 2014 (diff | hist) . . (0) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Create a folder and a script for the run)
- 00:42, 25 February 2014 (diff | hist) . . (+1,125) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Create a folder and a script for the run)
- 00:24, 25 February 2014 (diff | hist) . . (+22) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Create a folder and a script for the run)
- 22:32, 24 February 2014 (diff | hist) . . (-14) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Create a folder and a script for the run)
- 22:31, 24 February 2014 (diff | hist) . . (-1) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Log into the cluster)
- 22:30, 24 February 2014 (diff | hist) . . (+96) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Editing garli.conf)
- 22:27, 24 February 2014 (diff | hist) . . (+14) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Obtain a copy of the control file)
- 20:18, 24 February 2014 (diff | hist) . . (-268) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Obtain a copy of the control file)
- 20:14, 24 February 2014 (diff | hist) . . (+1) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Part A: Starting a GARLI run on the cluster)
- 20:13, 24 February 2014 (diff | hist) . . (-49) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Part A: Starting a GARLI run on the cluster)
- 18:51, 24 February 2014 (diff | hist) . . (+99) . . Phylogenetics: Large Scale Maximum Likelihood Analyses
- 18:50, 24 February 2014 (diff | hist) . . (+135) . . Phylogenetics: Large Scale Maximum Likelihood Analyses
- 18:48, 24 February 2014 (diff | hist) . . (-110) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Comparing GARLI, RaxML, and FastTree)
- 18:46, 24 February 2014 (diff | hist) . . (-5,342) . . Phylogenetics: Large Scale Maximum Likelihood Analyses (→Part C: Running FastTree on the cluster)
- 18:45, 24 February 2014 (diff | hist) . . (-128) . . Phylogenetics: Large Scale Maximum Likelihood Analyses
- 19:08, 21 February 2014 (diff | hist) . . (-18) . . 11563 (→Friday, 7 March 2014)
- 19:08, 21 February 2014 (diff | hist) . . (+15) . . 11563 (→Friday, 7 March 2014)
- 19:06, 21 February 2014 (diff | hist) . . (+19) . . 11824 (→Tuesday, 4 March 2014)
- 19:03, 21 February 2014 (diff | hist) . . (+18) . . 11308 (→Friday, 28 February 2014)
- 16:07, 21 February 2014 (diff | hist) . . (+2) . . 11555 (→Tuesday, 25 February 2014)
- 12:19, 21 February 2014 (diff | hist) . . (+27) . . 11555 (→Tuesday, 25 February 2014)
- 13:58, 20 February 2014 (diff | hist) . . (+3) . . Phylogenetics: Likelihood Lab (→Estimate base frequencies)
- 13:40, 20 February 2014 (diff | hist) . . (-286) . . Phylogenetics: Likelihood Lab (→Final paup block)
- 13:38, 20 February 2014 (diff | hist) . . (-1) . . Phylogenetics: Likelihood Lab (→Create a data file)
- 13:37, 20 February 2014 (diff | hist) . . (+306) . . Phylogenetics: Likelihood Lab (→Part A: Using PAUP* to check your answers for homework #4)
- 10:53, 20 February 2014 (diff | hist) . . (+3) . . Phylogenetics: Likelihood Lab (→Estimate both pinvar and the gamma shape parameter)
- 10:52, 20 February 2014 (diff | hist) . . (+3) . . Phylogenetics: Likelihood Lab (→Estimate the proportion of invariable sites)
- 10:52, 20 February 2014 (diff | hist) . . (+3) . . Phylogenetics: Likelihood Lab (→Estimate transition/transversion bias)
- 19:14, 18 February 2014 (diff | hist) . . (+31) . . 11278
- 01:36, 11 February 2014 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab (→A challenge)
- 01:35, 11 February 2014 (diff | hist) . . (-1) . . Phylogenetics: Likelihood Lab (→Final paup block)
- 01:30, 11 February 2014 (diff | hist) . . (0) . . Phylogenetics: Likelihood Lab
- 01:58, 6 February 2014 (diff | hist) . . (+520) . . Phylogenetics: Searching Lab (→Getting started)
- 19:15, 5 February 2014 (diff | hist) . . (+17) . . Phylogenetics: Searching Lab (→Using SplitsTree)
- 19:14, 5 February 2014 (diff | hist) . . (+2,475) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:26, 5 February 2014 (diff | hist) . . (+14) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:26, 5 February 2014 (diff | hist) . . (+97) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:24, 5 February 2014 (diff | hist) . . (+160) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:21, 5 February 2014 (diff | hist) . . (+12) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:20, 5 February 2014 (diff | hist) . . (+16) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:18, 5 February 2014 (diff | hist) . . (-3) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:17, 5 February 2014 (diff | hist) . . (+161) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:16, 5 February 2014 (diff | hist) . . (+1) . . Phylogenetics: Searching Lab (→Compare NJ with a comparable heuristic search)
- 18:15, 5 February 2014 (diff | hist) . . (+2,476) . . Phylogenetics: Searching Lab (→Now conduct a third search with TBR swapping)
- 01:15, 31 January 2014 (diff | hist) . . (-9) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 01:13, 31 January 2014 (diff | hist) . . (+4) . . Phylogenetics: Searching Lab (→Determine NNI rearrangements)
- 01:07, 31 January 2014 (diff | hist) . . (-87) . . Phylogenetics: Searching Lab
- 15:15, 30 January 2014 (diff | hist) . . (+416) . . Phylogenetics: Python Primer (→Your first Python script)
- 14:40, 30 January 2014 (diff | hist) . . (+5) . . Phylogenetics: Python Primer
- 13:55, 30 January 2014 (diff | hist) . . (-1) . . Phylogenetics: Python Primer (→Computing a JC distance from a p-distance)
- 13:50, 30 January 2014 (diff | hist) . . (0) . . Phylogenetics: Python Primer (→Lists and tuples)
- 20:58, 29 January 2014 (diff | hist) . . (-13) . . Phylogenetics: Python Primer (→Installing Python)
- 11:05, 28 January 2014 (diff | hist) . . (-34) . . Marine Biology Seminar Fall 2013 (current)
- 20:40, 27 January 2014 (diff | hist) . . (+83) . . Phylogenetics: Bioinformatics Cluster
- 15:33, 23 January 2014 (diff | hist) . . (+18) . . Phylogenetics: Bioinformatics Cluster (→Starting a PAUP* analysis)
- 15:07, 23 January 2014 (diff | hist) . . (-19) . . Phylogenetics: Bioinformatics Cluster (→SCP/SFTP)
- 15:06, 23 January 2014 (diff | hist) . . (-19) . . Phylogenetics: Bioinformatics Cluster (→SCP/SFTP)
- 14:53, 23 January 2014 (diff | hist) . . (+39) . . Phylogenetics: Bioinformatics Cluster (→Create the gopaup file)
- 17:55, 22 January 2014 (diff | hist) . . (+4) . . Phylogenetics: Python Primer (→Computing the Sum-of-Squares)
- 17:54, 22 January 2014 (diff | hist) . . (+4) . . Phylogenetics: Python Primer (→A revised script)
- 17:49, 22 January 2014 (diff | hist) . . (-152) . . Phylogenetics: Python Primer (→Computing the Sum-of-Squares)
- 17:39, 22 January 2014 (diff | hist) . . (+4) . . Phylogenetics: Python Primer (→Fancier print statements)
- 17:38, 22 January 2014 (diff | hist) . . (+4) . . Phylogenetics: Python Primer (→Your first Python script)
- 17:37, 22 January 2014 (diff | hist) . . (+435) . . Phylogenetics: Python Primer (→Install a text editor)
- 17:33, 22 January 2014 (diff | hist) . . (-174) . . Phylogenetics: Python Primer (→Install a text editor)
- 17:31, 22 January 2014 (diff | hist) . . (+260) . . Phylogenetics: Python Primer (→Loops)
- 17:29, 22 January 2014 (diff | hist) . . (-72) . . Phylogenetics: Python Primer (→Loops)
- 17:27, 22 January 2014 (diff | hist) . . (+6) . . Phylogenetics: Python Primer (→Computing a JC distance from a p-distance)
- 17:27, 22 January 2014 (diff | hist) . . (+1,236) . . Phylogenetics: Python Primer (→Computing a JC distance from a p-distance)
- 17:21, 22 January 2014 (diff | hist) . . (+353) . . Phylogenetics: Python Primer (→Computing a JC distance from a p-distance)
- 17:17, 22 January 2014 (diff | hist) . . (+33) . . Phylogenetics: Python Primer (→Using what you know)
- 17:15, 22 January 2014 (diff | hist) . . (+125) . . Phylogenetics: Python Primer (→Computing p-distances from numbers of differences)
- 17:11, 22 January 2014 (diff | hist) . . (-49) . . Phylogenetics: Python Primer (→Order of operations)
- 17:10, 22 January 2014 (diff | hist) . . (+636) . . Phylogenetics: Python Primer (→Sum, min and max)
- 17:03, 22 January 2014 (diff | hist) . . (-22) . . Phylogenetics: Python Primer (→Sum, min and max)
- 17:01, 22 January 2014 (diff | hist) . . (-14) . . Phylogenetics: Python Primer (→Precedence)
- 16:58, 22 January 2014 (diff | hist) . . (-9) . . Phylogenetics: Python Primer (→Order of operations)
- 16:56, 22 January 2014 (diff | hist) . . (+94) . . Phylogenetics: Python Primer (→Division)
- 16:54, 22 January 2014 (diff | hist) . . (+250) . . Phylogenetics: Python Primer (→Lists and tuples)
- 16:48, 22 January 2014 (diff | hist) . . (+660) . . Phylogenetics: Python Primer (→Integers, floats and strings)
- 16:38, 22 January 2014 (diff | hist) . . (+119) . . Phylogenetics: Python Primer (→Integers, floats and strings)
- 16:37, 22 January 2014 (diff | hist) . . (+23) . . Phylogenetics: Python Primer (→Kinds of information you can store in Python variables)
- 16:35, 22 January 2014 (diff | hist) . . (+32) . . Phylogenetics: Python Primer (→Installing Python)
- 16:35, 22 January 2014 (diff | hist) . . (+477) . . Phylogenetics: Python Primer (→Installing Python)
- 16:33, 22 January 2014 (diff | hist) . . (-499) . . Phylogenetics: Python Primer (→Starting Python on a Mac)
- 16:33, 22 January 2014 (diff | hist) . . (-70) . . Phylogenetics: Python Primer (→Starting Python)
- 16:32, 22 January 2014 (diff | hist) . . (+93) . . Phylogenetics: Python Primer (→Starting Python)
- 16:29, 22 January 2014 (diff | hist) . . (+129) . . Phylogenetics: Python Primer (→Installing Python)
- 16:20, 22 January 2014 (diff | hist) . . (-33) . . Phylogenetics: Python Primer (→Installing Python)
- 16:18, 22 January 2014 (diff | hist) . . (+37) . . Phylogenetics: Python Primer (→Installing Python)
- 16:16, 22 January 2014 (diff | hist) . . (0) . . Phylogenetics: Python Primer (→Installing Python)
- 16:15, 22 January 2014 (diff | hist) . . (-5) . . Phylogenetics: Python Primer (→What is Python?)
- 18:01, 20 January 2014 (diff | hist) . . (+33) . . Phylogenetics: Introduction to PAUP* (→Comparing NJ to parsimony and likelihood)
- 17:54, 20 January 2014 (diff | hist) . . (-1) . . Phylogenetics: Introduction to PAUP* (→Showing and saving trees)
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