Difference between revisions of "Principles and Methods of Systematic Biology (EEB 5347)"

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!style="background:#00B7EB;" width="275"|Lab
 
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| Aug 31 || Organizational meeting, an introduction to biological systematicsr<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematics/restricted/Introduction%202009%20class%20notes.pdf}}Introduction 2009 class notes.pdf || {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematics/restricted/Hubbell.pdf}}Hubbell.pdf<br/>http://www.nytimes.com/2009/08/11/science/11naming.html || rowspan="2"| Lecture instead of lab this week
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| Aug 31 || Organizational meeting, an introduction to biological systematicsr<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematics/restricted/Introduction%202009%20class%20notes.pdf}}Introduction 2009 class notes.pdf || {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/systematics/restricted/Hubbell.pdf}}Hubbell.pdf<br/>http://www.nytimes.com/2009/08/11/science/11naming.html || rowspan="3"| Lecture instead of lab this week
 
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| Sept 2 || The many roles of biological systematics & collections tour || ||
 
| Sept 2 || The many roles of biological systematics & collections tour || ||

Revision as of 21:51, 10 September 2009

Fall 2009

Lecture MW 9:00-10:30, Lab F 9:00-10:30

Instructor: Dr. David L. Wagner, TLS Rm 471
Phone: 486-2139
office hours as available
email: david.wagner@uconn.edu

Graduate Teaching Assistant: Chris Owen
Office hours: TLS 461 Monday 10:30-11:30 (BioPharm 323 most other times) or by appointment
Phone: 486-6650
email: christopher.l.owen@uconn.edu

Textbook and readings

There is no assigned text. Generally you can expect one or two readings to be assigned for each lecture. Many readings will be available as pdfs, downloadable from the course website. Others, available in hard copy only, will be on reserve in the departmental office (TLS 312) in the filing cabinet next to the window. You are free to check out copy #2 for 3 hours; copy #1 should stay in the office, i.e., so one is always there for others to photocopy.

Schedule

Day Topics Reading/Assignment Lab
Aug 31 Organizational meeting, an introduction to biological systematicsr
Pdficon small.gifIntroduction 2009 class notes.pdf
Pdficon small.gifHubbell.pdf
http://www.nytimes.com/2009/08/11/science/11naming.html
Lecture instead of lab this week
Sept 2 The many roles of biological systematics & collections tour
Sept 4 Species definitions & species intermediacy
Sept 7 No class
Sept 9-11
Species definitions & species intermediacy
Pdficon small.gifSpecies.ppt Pdficon small.gifSpecies Definitions.pdf

Pdficon small.gifSpecies Level Terminology 2009.pdf

Pdficon small.gifTempleton 1989.pdf Babbidge Library resources; taxonomic literature
Meet in Babbidge library Level 2 electronic classroom, across the lobby from the stairs and elevators
Sept 14 Lab
Sept 16-18
Individual variation(population variation)
Subspecies and geographic variation
Pdficon small.gifEhrlich&Raven1969.pdf (Wed.) Taxonomic resoursces: key websites, taxonomy exercise assigned (Meet in McCarthy Room, 4th floor TLS)


Supplementary Reading

Topics Additional Reading
Species as ranked taxa and species concepts Pdficon small.gifApplication of Evolutionary Species concept.pdf Pdficon small.gifSpecies concept for prokaryotes.pdf Pdficon small.gifIs the BSC showing its age?.pdf
Pdficon small.gifImportance of stating species concept for conservation purposes.pdf Pdficon small.gifImpact of species concepts on biodiversity studies.pdf
Pdficon small.gifThe need for specifying species concepts.pdfPdficon small.gifOn the failure of modern species concepts.pdf Pdficon small.gifSpecies as ranked taxa.pdf

Pdficon small.gifDoes the choice of species concept result in an increase in bird species?.pdf

Grading

Lab and take home exercises 20% 100 pts
Midterm 20% 100 pts
Term paper 25% 115 pts
Nomenclature exercise 2% 10 pts
Final 35% 175 pts
Total 100% 500 pts


Term paper

Each student will be required to prepare a paper that will be due on December 4th. Styles that have been adopted in the past include (1) a literature review that could be incorporated into a thesis chapter or (2) an NSF Doctoral Dissertation Improvement Grant proposal. Another angle would be to (3) review a subject relevant to systematic theory or methodology. If you are considering the DDIG option this year's Dissertation Improvement Grants will be due on 20 November. Visit http://researchfunding.duke.edu/detail.asp?OppID=587 htm

Important dates

9 October, 2009: conference; topic selection
23 October, 2009: outline with 5+ references
20 November, 2009: first draft due
4 December, 2009: paper due