Difference between revisions of "Phylogenetics: r8s Lab"
From EEBedia
(→Start the program PuTTY and connect to bbcxsrv1.biotech.uconn.edu) |
|||
| Line 14: | Line 14: | ||
=== Start the program PuTTY and connect to bbcxsrv1.biotech.uconn.edu === | === Start the program PuTTY and connect to bbcxsrv1.biotech.uconn.edu === | ||
There should be a shortcut to PuTTY on your desktop. Using PuTTY, connect to <tt>bbcxsrv1.biotech.uconn.edu</tt>. | There should be a shortcut to PuTTY on your desktop. Using PuTTY, connect to <tt>bbcxsrv1.biotech.uconn.edu</tt>. | ||
| + | |||
| + | <!-- | ||
alleyn [/home/tmp1/dist/src] 8% cd ../sample | alleyn [/home/tmp1/dist/src] 8% cd ../sample | ||
| Line 67: | Line 69: | ||
Below is the tree specified in the SAMPLE_SIMPLE file: | Below is the tree specified in the SAMPLE_SIMPLE file: | ||
| + | --> | ||
[[Category:EEB courses]] | [[Category:EEB courses]] | ||
[[Category:Phylogenetics]] | [[Category:Phylogenetics]] | ||
Revision as of 03:09, 13 April 2007
|
This article is still under construction. Expect it to change frequently until this notice is removed. |
|
EEB 349: Phylogenetics |
| The goals of this final lab are to learn how to: (1) set up a NEXUS file for the r8s program; (2) interpret the most important parts of the output of r8s; (4) view a tree with divergence times produced by r8s in TreeView. |
Using r8s to estimate divergence times
There is no version of r8s for the Windows operating system, so we will use the version installed on the Bioinformatics cluster.
Start the program PuTTY and connect to bbcxsrv1.biotech.uconn.edu
There should be a shortcut to PuTTY on your desktop. Using PuTTY, connect to bbcxsrv1.biotech.uconn.edu.
