Phylogenetics: Using IQ-TREE for multilocus likelihood analyses
|EEB 5349: Phylogenetics|
Today you will continue learning about maximum likelihood inference and will learn to use a program known for its speed and ability to handle large-scale phylogenetic analyses. IQ-TREE is not the only software that does this: you may later wish to visit the Phylogenetics: Large Scale Maximum Likelihood Analyses lab and note that there is also an alternative IQ-Tree written by Kevin Keegan for the 2018 version of EEB-5349.
Login to your account on the Health Center (Xanadu) cluster (ssh firstname.lastname@example.org). Type the following:
srun --qos=general --pty bash
to start a session on a node that is not currently running jobs. Once you see the prompt, type
module load paup/4.0a-166
to load the paup module.