Phylogenetics: HyPhy Lab

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Expect it to change frequently until this notice is removed.
Adiantum.png EEB 349: Phylogenetics
The goal of this lab exercise is to show you how to use the HyPhy program for data exploration and hypothesis testing within a maximum likelihood framework.

Part A: Obtaining the sequences

A Nexus data file containing sequences and a tree is located here: wickett.nex.

Part B: Using a codon model

Part C: Testing evolutionary phylogenetic hypotheses

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