Phylogenetics: Bioinformatics Cluster

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	EEB 349: Phylogenetics
	The goal of this lab exercise is to show you how to conduct maximum likelihood analyses in PAUP* using several models, and to decide among competing models using likelihood ratio tests

Part A: Using the UConn Bioinformatics Facility cluster

Part B: Starting a PAUP* run on the cluster

Part C: Starting a GARLI run on the cluster

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