Difference between revisions of "Phylogenetics: APE Lab"
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== Installing APE and related programs == | == Installing APE and related programs == | ||
| − | APE is a package written and supported largely by Emmanuel Paradis, who has written a very nice book | + | APE is a package written and supported largely by Emmanuel Paradis, who has written a very nice book<ref>Paradis, E. 2006. Analysis of phylogenetics and evolution with R. Springer. ISBN: 0-387-32914-5</ref> explaining in detail how to use APE. APE is designed to be used inside the [http://www.r-project.org/ R] programming language, to which you were introduced earlier in the semester (see [[Phylogenetics: R Primer]]). |
== Literature Cited == | == Literature Cited == | ||
<references/> | <references/> | ||
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| + | [[Category:EEB Courses]] | ||
| + | [[Category:Phylogenetics]] | ||
Revision as of 23:11, 28 April 2009
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EEB 349: Phylogenetics |
| This lab is an introduction to some of the capabilities of APE, a phylogenetic analysis package written for the R language. You may want to review the R Primer lab if you've already forgotten everything you learned about R. |
APE is a package written and supported largely by Emmanuel Paradis, who has written a very nice book[1] explaining in detail how to use APE. APE is designed to be used inside the R programming language, to which you were introduced earlier in the semester (see Phylogenetics: R Primer).
Literature Cited
- ↑ Paradis, E. 2006. Analysis of phylogenetics and evolution with R. Springer. ISBN: 0-387-32914-5
