Marine Biology Seminar

From eebedia

(Difference between revisions)
Jump to: navigation, search
m (Papers and Notes to Download for Discussion)
(Papers and Notes to Download for Discussion)
(41 intermediate revisions by 6 users not shown)
Line 1: Line 1:
=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==
+
=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==
 
<br/>
 
<br/>
 
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/>
 
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/>
Line 19: Line 19:
 
=='''Roadmap for the Semester'''==
 
=='''Roadmap for the Semester'''==
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/>
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/>
 
<br/>
 
<br/>
  
Line 26: Line 26:
 
|width=90%|'''General Topic'''
 
|width=90%|'''General Topic'''
 
|-
 
|-
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits
+
||A || Reviews describing grand challenges and new frontiers
 
|-
 
|-
 
|-
 
|-
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances
+
||B || Genomic responses to human disturbance, especially toxins/pollutants
 
|-
 
|-
 
|-
 
|-
||C ||Local adaptation in aquatic organisms
+
||C || Evolutionary genomics of halotolerance and transitions to novel salinity environments
 
|-
 
|-
 
|-
 
|-
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes
+
||D || Effects of invasive species on trophic relationships
 
|-
 
|-
 
|-
 
|-
||E ||  
+
||E || Evolution of performance in divergent populations
 
|-
 
|-
 
|-
 
|-
||F || Competition - linking empirical work to theory
+
||F ||  
 
|-
 
|-
 
|-
 
|-
||G || Chemical crypsis in an aquatic environment
+
||G ||  
 
|-
 
|-
 
|-
 
|-
||H || Turkey
+
||H ||  
 
|-
 
|-
 
|-
 
|-
||I || Stability and multifunctionality of communities
+
||I ||  
 
|-
 
|-
 
|-
 
|-
Line 62: Line 62:
 
|width=25%|'''Discussion leader'''
 
|width=25%|'''Discussion leader'''
 
|-
 
|-
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 ||  Eric  
+
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.
 +
||  Eric  
 
|-
 
|-
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon
+
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon
 
|-
 
|-
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff
+
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff  
 
|-
 
|-
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff
+
|9/20|| D || Nilsson et al. 2012. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs. Freshwater Biology, 57, 10-23 || Mike
 
|-
 
|-
|10/08|| C (also B?) || Gomes-Mestre, I. and M. Tejado. 2003. Local adaptation of an anuran amphibian to osmotically stressful environments. Evolution 57(8): 1889-1899 || Jessie
+
|9/27|| B || Lanham et al. 2012. Sensitivity to Dioxin Decreases as Zebrafish Mature. Tox Sci 127:360-370 || Lindsay
 
|-
 
|-
|10/15|| || Yamamoto, Y., M. S. Byerly, W. R. Jackman, and W. R. Jeffery. 2009. Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution. Developmental Biology 330:200-211.
+
|10/4|| C || Urbina, M. A., P. M. Schulte, J. S. Bystriansky, and C. N. Glover. 2013. Differential expression of Na+, K+-ATPase alpha-1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 183:345-357.
|| Emily
+
|| Becca
 
|-
 
|-
|10/22|| F || Hart, S.P., Burgin, J.R., and D.J. Marshall. 2012. Revisiting competition in a classic model system using formal links between theory and data. Ecology. || Michael
+
|10/11|| C || Martinez et al. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Trans. Am. Fish Soc. 140:829-842 || Jon
 
|-
 
|-
|10/29|| || No Class || Hurricane Sandy
+
|10/18|| E || Dalziel AC, Vines TH, Schulte PM. 2012. Reductions in prolonged swimming capacity following freshwater colonization in multiple threespine stickleback populations. Evolution 66-4:1226-1239 || Jeff
 
|-
 
|-
|11/05|| G || Barimo, JF and PJ Walsh.  2006.  Use of urea as a chemosensory cloaking molecule by a bony fish. The Journal of Experimental Biology 209: 4254-4261 || Jessie
+
|10/25|| ||  || Mike
 
|-
 
|-
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi
+
|11/1|| || || Lindsay
 
|-
 
|-
|11/19|| H ||  || ''Thanksgiving "Break"''
+
|11/8|| ||  || Sam
 
|-
 
|-
|11/26|| I ||  || Michael
+
|11/15|| ||  || Jon
 
|-
 
|-
|12/03|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. || Jon
+
|11/22||  ||  || Jeff
 +
|-
 +
|12/6|| || || Lindsay
 
|-
 
|-
 
|}
 
|}
Line 94: Line 97:
 
=='''Papers and Notes to Download for Discussion'''==
 
=='''Papers and Notes to Download for Discussion'''==
 
<br/>
 
<br/>
'''SEPTEMBER 10'''<br/>
+
'''AUGUST 30'''<br/>
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS
+
 +
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience
 +
 
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading
 
<br/>
 
<br/>
  
'''SEPTEMBER 17'''<br/>
+
'''SEPTEMBER 6'''<br/>
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf
 
<br/>
 
<br/>
  
'''SEPTEMBER 24'''<br/>
+
'''SEPTEMBER 13'''<br/>  
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/>
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20Discussion_9%2C24%2C12.pdf}}Kultz Discussion_9,24,12.pdf
+
'''OCTOBER 1'''<br/>
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale12_GCE_tilapiaTRPV4.pdf}}Seale12_GCE_tilapiaTRPV4.pdf<br/>
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale%20TRP%20Discussion_10%2C1%2C12.doc}}Seale TRP Discussion_10,1,12.doc
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Osmosensing_Pres.pdf}}Osmosensing_Pres.pdf
+
'''OCTOBER 8'''<br/>
+
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Evolution2003.pdf}}Gomez_Mestre_and_Tejado.pdf
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Marine%20Bio%2010.8.12.pdf}}Questions and notes
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx
 
<br/>
 
<br/>
 +
 +
'''SEPTEMBER 20'''<br/>
 +
<br/>
 +
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Nilsson%20et%20al%202012.pdf}}Nilsson et al 2012 Freshwater Biology
 +
<br/>
 +
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Mike%27sDiscussionQs_9%2C20%2C13.docx}}Mike'sDiscussionQs_9,20,13.docx
 
<br/>
 
<br/>
  
'''OCTOBER 15'''<br/>
+
'''SEPTEMBER 27'''<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Jeffrey.sonic%20hedgehog%20expression%20link%20jaw%20and%20taste%20bud%20amplification%20with%20eye%20loss%20in%20cavefish.pdf}}Jeffrey.sonic hedgehog expression link jaw and taste bud amplification with eye loss in cavefish.pdf
+
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%206%20yamamoto%20notes%20and%20further%20reading.pdf}}EEB 6483 Fall 2012 week 6 yamamoto notes and further reading.pdf
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Toxicological%20Sciences.pdf}}Lanham et al 2012 Toxicological Sciences.pdf
 
<br/>
 
<br/>
 +
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Discussion.docx}}Lanham et al 2012 Discussion.docx
 
<br/>
 
<br/>
  
'''OCTOBER 22'''
+
'''OCTOBER 4'''
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hart%2C%20Burgin%2C%20%26%20Marshall%202012%20Ecology%20%28Revisiting%20competition%20in%20a%20classic%20model%20system%20using%20formal%20links%20between%20theory%20and%20data%29.pdf}} Hart, Burgin, & Marshall 2012 Ecology
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%202012%20j%20comp%20physiol%20b.pdf}}Urbina et al 2012 J. Comp Physiol B
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hart%20et%20al%202012%20Ecology%20-%20Appendix%20A.pdf}} Hart et al 2012 Ecology - Appendix A.pdf
+
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hart%20et%20al%202012%20-%20Notes%20for%20Discussion.pdf}} Michael - Notes for Discussion.pdf
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%20Discussion.pdf}}Urbina et al Discussion.pdf
 
<br/>
 
<br/>
  
'''OCTOBER 29'''<br/>
+
'''OCTOBER 11'''<br/>
 
<br/>
 
<br/>
No Class
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%202011.pdf}} Martinez et al 2011.pdf
 
<br/>
 
<br/>
 +
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%20Discussion.pdf}} Martinez et al Discussion.pdf
 
<br/>
 
<br/>
  
'''NOVEMBER 5'''<br/>
+
 
 +
'''OCTOBER 18'''<br/>
 +
<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_UcritDiffer3SSB.pdf}}Dalziel12_UcritDiffer3SSB.pdf
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/chemical%20crypsis%20fish.pdf}}Barimo & Walsh 2006
+
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_suppl.doc}}Dalziel12_suppl.doc
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Marine%20Bio%2011.4.12.pdf}}Discussion questions and further reading.
+
 
 +
 
 +
'''OCTOBER 25'''<br/>
 
<br/>
 
<br/>
  
'''NOVEMBER 12'''<br/>
 
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf
 
 
<br/>
 
<br/>
  
'''NOVEMBER 19'''<br/>
 
 
<br/>
 
<br/>
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000">  
+
 
 +
'''NOVEMBER 1'''<br/>
 
<br/>
 
<br/>
 +
 
<br/>
 
<br/>
  
'''NOVEMBER 26'''<br/>
 
 
<br/>
 
<br/>
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Narwani%20%26%20Mazumder%202012%20J%20Animal%20Ecol%20%28Bottom-up%20effects%20of%20species%20diversity%20on%20the%20functioning%20and%20stability%20of%20food%20webs%29.pdf}} Narwani & Mazumder 2012 - J. Animal Ecol. - Bottom-up effects of species diversity on the functioning and stability of food webs
+
 
 +
 
 +
'''NOVEMBER 8'''<br/>
 
<br/>
 
<br/>
 +
 
<br/>
 
<br/>
  
'''DECEMBER 3'''<br/>
 
 
<br/>
 
<br/>
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/berdan%26fuller%202012.pdf}}berdan&fuller 2012.pdf
+
 
 +
 
 +
'''NOVEMBER 15'''<br/>
 
<br/>
 
<br/>
 +
 
<br/>
 
<br/>
  
 +
<br/>
 +
 +
'''NOVEMBER 22'''<br/>
 +
<br/>
 +
 +
<br/>
 +
 +
<br/>
 +
'''DECEMBER 5'''<br/>
 +
<br/>
 +
 +
<br/>
 +
 +
<br/>
 +
 +
=='''Past Marine Biology Seminars'''==
 +
<br/>
 +
 +
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]
 +
 +
<br/>
 
[[Category:EEB Seminars]]
 
[[Category:EEB Seminars]]

Revision as of 19:19, 10 October 2013

Contents

THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION


This page is for use by participants in EEB 6483 Seminar in Marine Biology.


Faculty Instructor


Eric Schultz (eric.schultz@uconn.edu)

How to Upload a Paper to This Site


To upload a pdf use THIS FORM (note that you will be asked for username and password to access the form)
Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in Help.


Roadmap for the Semester


Pdficon small.gifGuidelines for the seminar


Topic code General Topic
A Reviews describing grand challenges and new frontiers
B Genomic responses to human disturbance, especially toxins/pollutants
C Evolutionary genomics of halotolerance and transitions to novel salinity environments
D Effects of invasive species on trophic relationships
E Evolution of performance in divergent populations
F
G
H
I


Date Topic code Assigned paper Discussion leader
8/30 A Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471. Eric
9/6 B Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 Jon
9/13 C Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 Jeff
9/20 D Nilsson et al. 2012. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs. Freshwater Biology, 57, 10-23 Mike
9/27 B Lanham et al. 2012. Sensitivity to Dioxin Decreases as Zebrafish Mature. Tox Sci 127:360-370 Lindsay
10/4 C Urbina, M. A., P. M. Schulte, J. S. Bystriansky, and C. N. Glover. 2013. Differential expression of Na+, K+-ATPase alpha-1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 183:345-357. Becca
10/11 C Martinez et al. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Trans. Am. Fish Soc. 140:829-842 Jon
10/18 E Dalziel AC, Vines TH, Schulte PM. 2012. Reductions in prolonged swimming capacity following freshwater colonization in multiple threespine stickleback populations. Evolution 66-4:1226-1239 Jeff
10/25 Mike
11/1 Lindsay
11/8 Sam
11/15 Jon
11/22 Jeff
12/6 Lindsay


Papers and Notes to Download for Discussion


AUGUST 30

Pdficon small.gifKultz et al 2013 bioscience


Pdficon small.gif Notes and further reading


SEPTEMBER 6

Pdficon small.gifWhitehead et al 2011 proc B.pdf


Pdficon small.gifWhitehead2011Discussion.pdf


SEPTEMBER 13

Pdficon small.gifHohenlohe et al 2012 Phil Trans Roy Soc B


Pdficon small.gifHohenloheDiscussion_9,13,13.docx


SEPTEMBER 20

Pdficon small.gifNilsson et al 2012 Freshwater Biology


Pdficon small.gifMike'sDiscussionQs_9,20,13.docx


SEPTEMBER 27

Pdficon small.gifLanham et al 2012 Toxicological Sciences.pdf


Pdficon small.gifLanham et al 2012 Discussion.docx


OCTOBER 4

Pdficon small.gifUrbina et al 2012 J. Comp Physiol B


Pdficon small.gifUrbina et al Discussion.pdf


OCTOBER 11

Pdficon small.gif Martinez et al 2011.pdf


Pdficon small.gif Martinez et al Discussion.pdf



OCTOBER 18

Pdficon small.gifDalziel12_UcritDiffer3SSB.pdf

Pdficon small.gifDalziel12_suppl.doc



OCTOBER 25



NOVEMBER 1




NOVEMBER 8




NOVEMBER 15



NOVEMBER 22



DECEMBER 5



Past Marine Biology Seminars



Personal tools