Difference between revisions of "IQ-Tree"

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(Created page with "{| border="0" |- |rowspan="2" valign="top"|200px |<span style="font-size: x-large">[http://phylogeny.uconn.edu/courses/ EEB 5349: Phylogenetics]</span>...")
 
(Goals)
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== Goals ==
 
== Goals ==
  
Continue learning anout ML inference and introduce you to two programs (GARLI and RAxML) designed specifically for maximum likelihood analyses on a large scale (hundreds of taxa).  
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To introduce you to IQ-Tree, and to show you how to visualize and annotate trees with the R package ggtree.
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== Introduction ==
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Both IQ-Tree (2015) and ggtree (2017) are relative newcombers to their respective arenas, so let's road-test them. If that's not cutting-edge enough for you, we will be using them with the data from a 2018 study that was published on February 9th! The study
  
 
== The data ==
 
== The data ==

Revision as of 03:53, 16 February 2018

Adiantum.png EEB 5349: Phylogenetics

Goals

To introduce you to IQ-Tree, and to show you how to visualize and annotate trees with the R package ggtree.

Introduction

Both IQ-Tree (2015) and ggtree (2017) are relative newcombers to their respective arenas, so let's road-test them. If that's not cutting-edge enough for you, we will be using them with the data from a 2018 study that was published on February 9th! The study

The data