Evolutionary Biology Fall 2012

From EEBedia
Revision as of 13:28, 13 April 2017 by Veronica Bueno (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

EEB 2245: Evolutionary Biology

Meeting Time: Tuesdays and Thursdays, 12:30-1:45 in UTEB 150

Instructor: Chris Simon, Professor EEB, Office: Biopharm 305D, phone 6-4640, Lab: Biopharm 323 & 325, phone 6-3947;
e-mail: chris.simon@uconn.edu [e-mail is the best place to leave messages.]

Office hours: Flexible except in the morning before our class. See me after class or send me an e-mail to arrange a meeting. I encourage quick questions by electronic mail. With longer questions or many questions, please come to see me or your TA, Colin Carlson. Don’t wait until the day before an exam!

Teaching Assistant: Colin Carlson, e-mail: colin.carlson@uconn.edu

Class Website: http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Category:EEB_Courses

Grade: The goal of this class is to teach you the basic principles of evolution and to give you an appreciation for the science. It is important to me that you learn the material. I hate to assign grades but they are required. Therefore I am trying an experiment this semester to try to lessen the pressure on the midterm and enhance your learning experience. Each Friday I will post a Study Guide. Each Wednesday, TA Colin Carlson will host a study guide review session. Each Thursday at the end of class, as a quiz, I will ask you a few questions from that study guide. We’ll grade the quizzes and return them to you by the following Thursday. Hopefully these quizzes will serve to prepare you for the first midterm and to ensure that your grade is not based on your performance on only the midterm and the final.

EEB 245: There will be a series of ten quizzes (as described above) and two one-hour exams covering each half of the course (listed on the syllabus) and a comprehensive one-hour synthetic final exam. The second one-hour exam will be given in the same two-hour time block as the synthetic final. The quizzes will count 10% of your total grade, the first exam 40% and the second hour exam plus the final will count 25% each.

EEB 245W: If you are registered for EEB 245W, 75% of the final course grade will be determined by your lecture exams (as above) and 25% by your term paper. As required by University regulations, an F in the W part of the course will result in an F for the entire course. At least two drafts of your writing assignment must be successfully completed to pass the course. A detailed set of instructions will be provided and W students will be assigned a W instructor during the first week of class.

Text: Futuyma, D. J. 2009. Evolution. Second Edition. Sinauer Publications, Sunderland, Mass. http://www.sinauer.com/detail.php?id=2238. The UCONN coop should have lots of used copies. Please read assigned chapters prior to the class for which they are scheduled. Additional supplementary readings may be assigned during the semester. See also new value options from Sinauer: http://www.sinauer.com/detail.php?id=2238#tions

Syllabus: Download the PDF. The syllabus always evolves. I will periodically send updated versions which track our true progress and introduce late breaking topics.

Pdficon small.gifSyllabus EEB 2245 F 2012 29 Nov 12.rtf

Quiz Keys:

Pdficon small.gifQuiz 1. History, Creationism. Key.docx
Pdficon small.gifQuiz 2, Fall 12 Key.docx
Pdficon small.gifQuiz 3 F 12 key rev.docx
Pdficon small.gifQuiz 4. Load, Levels of Selection, Plasticity key.docx
Pdficon small.gifQuiz 5, F12 EEB 2245 key.docx
Pdficon small.gifQuiz 6 F12 Systematics Key.docx
Pdficon small.gifQuiz 7, F12, Molecules & Clocks key.docx
Pdficon small.gifQuiz 8. Life overview, Novelties Key.docx
Pdficon small.gifQuiz 9. novelties, fossils to permian Key.docx

Midterm Answer Key:

Study Guides, Handouts:

Pdficon small.gifStudy Guide I EEB 2245 F 12 .doc
Pdficon small.gifDarwin Chronology and Pubs (handout)
Pdficon small.gifArchitects of the Modern Synthesis (Handout)
Pdficon small.gifStudy Guide 2. EEB 2245 Fall 12Hardy Weinberg.rtf
Pdficon small.gifStudy Guide 3. EEB 2245 Fall 12 Bottlenecks, Founders, Selection.rtf
Pdficon small.gifNatural Selection Review Table.pdf
Pdficon small.gifStudy Guide 4. F12 Selection II rev.doc
Pdficon small.gifStudy Guide 5. F12 variation isolation speciation.doc
Pdficon small.gifStudy Guide 6 Hybridization.docx
Pdficon small.gifLect 16. Handout Constructing Evolutionary Trees 2012.pdf
Pdficon small.gifStudy Guide 7. Systematics. F 12.pdf
Pdficon small.gifStudy Guide 7 answers systematics F 12.rtf
Pdficon small.gifStudy Guide 8 Clocks, Life F 12.docx
Pdficon small.gifStudy Guide 9, F12, Novelties.docx
Pdficon small.gifStudy Guide 10, Fossil Overview & Paleozoic F 12.rtf
Pdficon small.gifStudy Guide 11. Mesozoic F 12.rtf
Pdficon small.gifStudy Guide 12. Cenozoic and Fossil Record Summary F12.doc
Pdficon small.gifStudy guide 13. Human Evolution Biodiversity Biogeography.rtf

Lecture notes:

Pdficon small.gifEEB 2245 Lect. 1 Intro (four per page) 2012.pdf
Pdficon small.gifEEB 2245 Lect. 1 Intro 2012 (with lines).pdf
Pdficon small.gifEEB 2245 Lec. 2 Evidence 2012 (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 3 History 2012 (with lines).pdf
Pdficon small.gifEEB 2245 Lect 3. History (6 per page) EEB2245.pdf
Pdficon small.gif EEB 2245 Lect. 4. Population Biology, HW (4 per page).pdf
Pdficon small.gifEEB 2245 Lect. 4 Population Biology 2012 (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 5. Deviations from HW F12.pdf
Pdficon small.gifEEB 2245 Lect 6. H-W selection, Inbreeding & Drift Geneflow.pdf
Pdficon small.gifEEB 2245 Lecture 5 2012 (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 6 (with lines).pdf
Pdficon small.gifEEB 2245 Lect 7. Inbreeding, gene flow, selection.pdf
Pdficon small.gifEEB 2245 Lect. 7 2012 (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 8. Selection I revised F12.pdf
Pdficon small.gifEEB 2245 Lect. 9. Natural Selection II plasticity coevolution F12.pdf
Pdficon small.gifEEB 2245 Lect. 9. (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 10. Load, Geographic Variation.pdf
Pdficon small.gifLecture 10 (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 11 Geog. Var. (cont) Factors reducing geneflow.pdf
Pdficon small.gifLecture 11 (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 12 Isolation, species concepts.pdf
Pdficon small.gifLecture 12 (with lines).pdf
Pdficon small.gifEEB 2245 Lect. 13. Speciation Mechanisms.pdf
Pdficon small.gifLecture 13 (with lines).pdf
Pdficon small.gifEEB 2245 Lect 14. Hybridization.pdf
Pdficon small.gifLecture 14 (with lines).pdf
Pdficon small.gifLect. 15. Systematics EEB 2245 F 2012.pdf
Pdficon small.gifLect. 16 F12 Building Trees 23Oct12.pdf
Pdficon small.gifLecture 16 (with lines).pdf
Pdficon small.gifLect. 17 F12 Building Trees Morph. Molec. Evolution Rev F12.pdf
Pdficon small.gifLecture 18 with lines.pdf
Pdficon small.gifEEB 2245 Lect 19. pt 1. Overview of life.pdf
Pdficon small.gifEEB 2245 Lect. 19 pt 2, Overview of life.pdf
Pdficon small.gifLect 20. Part I. Evolutionary Novelties F 12.pdf
Pdficon small.gifLect 20. Part 2. Evolutionary Novelties F 12-2.pdf
Pdficon small.gifLecture 21. Novelties Fossil overview F12.pdf
Pdficon small.gifLect. 22. Paleozoic F12.pdf
Pdficon small.gifLect. 23. Mesozoic Part 1 F12.pdf
Pdficon small.gif Lect. 23. Part 2. Mesozoic F12.pdf
Pdficon small.gifLect. 24. Cenozoic (Paleocene-Eocene) 29 Nov F12-2.pdf
Pdficon small.gifLect. 25. Cenozoic & Human Evolution Part 1.pdf
Pdficon small.gifLect. 25. Part 2 Cenozoic & Human Evolution.pdf
Pdficon small.gifLecture 25.& 26. Human Evolution.pdf
Pdficon small.gifLect 26 Biodiversity & Biogeography F12.pdf

Evolution in the News, Scientific Literature, and You Tube

Bird Tree of Life- 30 Oct 2012

Watch your back mate! Courtship of peacock spider Maratus volans from Australia- 23 Mar 2011

African mouse sheds patches of skin and hair to escape predators- 26 Sep 2012

Cool Looking Monkey New to Science Found in Congo- 14 Sep 12

Peppered moths vindicated! - 28 February 2012
Darwin's long-lost fossils - 17 January 2012

H1N1- A case of suspended animation- 29 Aug 2012

Tool use evolution

Tool Use Evolution- Sept 2002

“Tool-use is commonly attributed to humans and other primates. However, several bird species are also known to use tools habitually. Egyptian vultures (Neophron percnopterus) are famous for dropping stones on ostrich eggs (Van Lawick-Goodall & Van Lawick-Goodall 1966), green-backed herons (Butroides striatus) use bait to catch fish (Walsh et al. 1985), satin bower birds (Ptilonorhynchus violaecus) use bark-wads to paint their bower (Chaffer 1945), and New Caledonian crows (Corvus moneduloides) make and use two forms of tools to capture prey (Hunt 1996). The woodpecker finch (Cactospiza pallida), one of 15 species of Darwin's Finches, is perhaps the most famous example of a tool-using bird. It uses twigs or cactus spines to pry arthropods from tree-holes and crevices (Eibl-Eibesfeldt 1961; Eibl-Eibesfeldt & Sielman 1962)…. social learning is not an important mechanism in the acquisition of tool-use in the woodpecker finch (Tebbich et al. 2001).”