Difference between revisions of "EEB2244W Fall 2012: Prof. Turchin"

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(Created page with "==Instructors<br/>== Dr. Elizabeth Jockusch, ''coordinator'' | '''Office''': BioPharm 305B, '''Phone''': 486-4452, '''e-mail''': elizabeth.jockusch [at] uconn.edu<br/> Dr. Kr...")
 
 
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==Instructors<br/>==
+
==Instructor<br/>==
Dr. Elizabeth Jockusch, ''coordinator'' |
+
Dr. Peter Turchin |
'''Office''': BioPharm 305B, '''Phone''': 486-4452, '''e-mail''': elizabeth.jockusch [at] uconn.edu<br/>
+
'''Office''': TLS 462, '''Phone''': 486-3603,  
 +
'''e-mail''': peter.turchin@uconn.edu<br/>
  
Dr. Kristiina Hurme |
+
==Announcements==
'''Office''': TLS 379A, '''Phone''': 486-5434, '''e-mail''': kristiina.hurme [at] uconn.edu <br />
+
===Oct. 31===
 +
SCHEDULE OF MEETINGS WITH PROF. TURCHIN
 +
We will meet today (Wednesday, Oct. 31) at 2 pm as was annoubnced previously
  
Dr. Carl Schlichting |
+
The second meeting is Thursday, Nov. 1 at 5:00 pm
'''Office''': TLS 366, '''Phone''': 486-4056,
+
'''e-mail''': carl.schlichting [at] uconn.edu<br/>
+
  
Dr. Kurt Schwenk |
+
Both meetings will take place in my lab, TLS 462
'''Office''': BioPharm 600, '''Phone''': 486-0351,
+
'''e-mail''': kurt.schwenk [at] uconn.edu,
+
LINK [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Schwenk_EEB2245W_Page '''HERE'''] TO DR. SCHWENK'S W-SECTION PAGE)<br/>
+
  
Dr. Ted Taigen |
+
Please e-mail to me if you are unable to come to one of these sessions.
'''Office''': TLS 184, '''Phone''': 486-4154,
+
'''e-mail''': theodore.taigen [at] uconn.edu<br/>
+
  
Dr. Peter Turchin |
 
'''Office''': TLS 462, '''Phone''': 486-3603,
 
'''e-mail''': peter.turchin [at] uconn.edu<br/>
 
  
 +
===Oct. 29===
 +
TUESDAY SESSION IS CANCELLED DUE TO HURRICANE SANDY
  
This website contains information for the W portion of the course only.  For the lecture portion of the course, click [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Evolutionary_Biology_Spring_2012 here]<br/><br/>
 
Sign up sheets for the library resources session and quizzes for the W part of the course are available on [http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT]
 
<br/><br/>
 
  
==Announcements<br/>==
+
===Oct. 26===
===Final Term Paper===
+
MEETINGS NEXT WEEK
<span style="font-size: larger">Final term papers are due on '''Friday, April 27'''.  There is no quiz to complete with this assignment.  The writing center has a [http://writingcenter.uconn.edu/pdf/Tips_for_revising_any_scientific_writing.pdf handout] with helpful suggestions on how to approach the final revisions.<br/><br/>
+
  
===Quiz 3 & Assignment 3===
+
I will be sending graded second assignments to each of you by next Monday.  
Quiz 3 is now available on [http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT].  Quiz 3 and assignment 3 are due '''Friday, March 30'''.<br/><br/>
+
  
===Checklist<br/>===
+
Next week I will also be meeting with all of you to discuss the progress so far and answer any questions that you might have. These meetings will take place in TLS 462 at the following times:
<font color="#CC0000"><span style="font-size: larger">'''Use this checklist before submitting your draft.''' <font color="#000000">It will help you avoid common problems.  We also suggest that you review the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Term_Paper_Assignment term paper assignment] and any additional information provided by your instructor.
+
  
*Does your paper begin with an abstract that summarizes your main points?
+
Tuesday Oct. 30 at 3:00 pm
*Does your paper have a clear thesis statement?  (See [http://uconnwritinginscience.files.wordpress.com/2008/05/245w_thesis_statements.pdf this blog entry] on thesis statements for more information.)
+
Wednesday Oct. 31 at 2:00 pm
*Does the introduction give readers enough context and background to follow your arguments?
+
*Have you supported all of your claims with evidence from the primary literature?
+
*Have you cited sources properly in the text and literature cited sections?  (See the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/General_rules_for_citing_sources_in_scientific_writing citation page] and quiz 1 on HuskyCT for reminders on how to do this).
+
*Do you use at least 8 primary sources?
+
*Does your paper have an informative title?
+
*Have you formatted scientific names properly?  (See the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Scientific_writing_advice scientific writing tips sheet] for more information.)
+
*Have you proofread a printed copy of your paper?  It helps to read the paper out loud.
+
*Have you checked the spelling?  Remember that MSWord doesn't always know the scientific lingo, so don't assume it's right.  (For example, it will want to turn phylogenetic into phylogenic.  Don't let it!)
+
*Did you follow the formatting and length requirements?
+
<br/>
+
  
 +
Please sign up for one of these times by sending me an e-mail. Also let me know if you cannot make either of them, and I will try to find another time slot.
  
===Meetings, week of March 5===
 
Arrange a meeting with your W instructor this week to discuss assignment 2. <br/><br/>
 
  
===Quiz 2 & Assignment 2===
+
===Sept. 24===
Quiz 2 is now available on [http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT].  Quiz 2 and assignment 2 are due '''Friday, Feb. 24'''.<br/><br/>
+
  
===Who is my W instructor?===
+
EEB 2244W-Fall 2012
W instructor assignments are available through [http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT].  Check the grades tab to find out who your instructor is.  Most of you will get to meet your instructor at your library session, and you should receive an email from him or her in the near future describing the first assignment.  '''All questions about the W portion of this course, with the exception of questions involving HuskyCT, should be addressed to your W instructor'''.  Dr. Jockusch is responsible for the HuskyCT portion of the course.<br/><br/>
+
STUDENTS OF PROF. PETER TURCHIN
  
===Assignment submission===
+
Assignment 1 has been graded (for almost all of you - who submitted on time). However, several people have still to submit this assignment to me, even though the deadline was last Friday. Note that it is your responsibility to keep track of deadlines and submit your work on time. All information you need is posted here:
All assignments are submitted to, and graded by, your instructor. Your instructor will also provide additional information, either by email or through a web link, about assignment requirements, assignment submission, and required meetings.<br/><br/>
+
 
 +
http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/EEB2244W_Fall_2012:_Prof._Turchin
 +
 
 +
Some of you have asked me about information appearing on HuskyCT relevant to the W part. Ignore it, it's instructions from other faculty 'leaking in.' All you need to know and do is posted on my Eebedia page at the link above. (Obviously, don't ignore the non-W part of EEB2244!)
 +
 
 +
For your next assignment, which is due on Friday, Oct. 19 you need to submit
 +
 
 +
(1) A rough draft of the Introduction
 +
 
 +
(2) A revised outline, reflecting my comments on Assignment 1.
 +
 
 +
Remember that you are writing a scientific paper. The core of doing science is explaining things. So you paper should be not about describing something, but about explaining an interesting pattern or asking and answering an interesting question.
 +
 
 +
Usually there are more than one potential explanations - they are called hypotheses (note that singular is hypothesis, plural is hypotheses). Your paper's goal is to identify an interesting problem, discuss potential explanations (hypotheses), and review empirical studies that bear on these explanations.
 +
 
 +
The introduction is a key part, probably the most important part of the paper. It is structured as an 'inverted funnel' - wide at the beginning, narrow at the end. The first paragraph starts with the broad picture. In it you should explain why the general topic of your paper is important and interesting. Next you rapidly narrow down to the specific focus of your paper. Describe what you are trying to explain and what are the possible explanations.
 +
 
 +
In the last paragraph of the introduction provide the reader with a roadmap to the rest of your paper. Use direct language and first person (‘I’). You can say something like this, “In the first section I discuss this. In the next section I address the first hypotheses …” and so on.
 +
 
 +
The introduction should be short, around 500-700 words. Leave detailed discussion of the data for the main body of the paper.
 +
 
 +
Finally, note that you will be rewriting the Introduction two more times. The first one will be when you write the rough draft, because the stuff you end up putting in the main body will affect the structure of the introduction. The second time you will rewrite it as part of producing the final draft.
 +
 
 +
A final note: I will be traveling during the next two weeks, so we will communicate by e-mail. I will schedule meetings with all of you after I grade Assignment 2 (this will be during the week of Oct. 29).
 +
 
 +
 
 +
 
 +
 
 +
 
 +
===Sept. 7===
 +
 
 +
EEB 2244W-Fall 2012
 +
INSTRUCTIONS TO THE STUDENTS OF PROF. PETER TURCHIN
 +
 
 +
The first thing you should do is go to this web site:
 +
 
 +
http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/EEB2244W_Fall_2012:_Prof._Turchin
 +
 
 +
Read carefully all materials posted there and follow the links in the  last section, 'EEB2244W Resources'. Don't delay, because the first  assignment is due soon. Read all the materials before you ask me questions! The answer is likely to be there.
 +
 
 +
ADDITIONAL INSTRUCTIONS
 +
 
 +
1. SUBMITTING YOUR WORK
 +
Submit your work in electronic form by e-mail. Documents in the old MS Word  formats (*.doc) are preferred. If you use another word  processor, save your text as Rich Text Format (*.rtf) and e-mail it to me. I will return your graded work also by e-mail. My comments will be  added using the "Track Changes" feature in Word.
 +
 
 +
Your text should be SINGLE SPACED, 12 point. Don’t use underlining – use italics for emphasis.
 +
 
 +
2. ASSIGNMENT 1 INSTRUCTIONS
 +
Your Assignment 1 is to prepare an outline of your paper. The outline  should be a bulleted/numbered list of phrases (not complete paragraphs). If you use Word, format it as "Outline Numbered" (under "Bullets and  Numbering", at least in my version of Word). An example of an outline can be found here:
 +
 
 +
http://www.aresearchguide.com/1steps.html
 +
 
 +
(scroll down to Step 4, MAKE A TENTATIVE OUTLINE). In general, this web site gives excellent  advice on writing a research paper.
  
 
==Course Goals==   
 
==Course Goals==   
 
The goals of this course are to help you learn to present your ideas and arguments in clear, well-organized prose and to introduce you to library research in biology.  Because it is a science course, some of what you learn about writing will apply principally to scientific writing, but your efforts in this course will also translate into enhanced skills in other writing tasks.<br/>
 
The goals of this course are to help you learn to present your ideas and arguments in clear, well-organized prose and to introduce you to library research in biology.  Because it is a science course, some of what you learn about writing will apply principally to scientific writing, but your efforts in this course will also translate into enhanced skills in other writing tasks.<br/>
The assignments are geared towards writing a [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Term_Paper_Assignment term paper] on a subject that interests you in evolutionary biology.  It is very important that you devote time and thought to your choice of topic so that you enjoy the research that goes into this paper. Your instructor will help you. By the end of the course, you will be an expert on this topic!<br/><br/>
+
The assignments are geared towards writing a [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Term_Paper_Assignment term paper] on a subject that interests you in ecology.  It is very important that you devote time and thought to your choice of topic so that you enjoy the research that goes into this paper. Your instructor will help you. By the end of the course, you will be an expert on this topic!<br/><br/>
  
 
==Requirements==
 
==Requirements==
*'''Meetings''':  All W students must sign up for and attend one library resources session during the 1st or 2nd week of classes.  Sign-up is through HuskyCT.  Failure to attend one of these sessions may result in being dropped from the W section.  Your instructor may require additional meetings.<br/><br/>
+
*'''Meetings''':  All W students must sign up for and attend one library resources session during the 1st or 2nd week of classes.  Sign-up is through HuskyCT.  Failure to attend one of these sessions may result in being dropped from the W section.  <br/><br/>
*'''Quizzes''':  All students must pass 3 online quizzes, which will be administered through HuskyCT.<br/><br/>
+
 
*'''Assignments''':  The final written product in this course is a review paper that defends a significant claim in evolutionary biology using data from the primary literature.  This paper should be 4500-5000 words in length (about 15 pages) and cite a minimum of 8 references from the primary literature. Primary literature is written by the author(s) of the scientific research. Secondary literature is written by someone other than the author and could contain factual errors. To guide you through the process of researching and writing your paper, there are four term paper assignments. <br/>
+
*'''Quizzes''':  All students must pass the online quizz on plagiarism, which will be administered through HuskyCT.<br/><br/>
 +
 
 +
*'''Assignments''':  The final written product in this course is a review paper that defends a significant claim in ecology using data from the primary literature.  This paper should be 4500-5000 words in length (about 15 pages) and cite a minimum of 8 references from the primary literature. Primary literature is written by the author(s) of the scientific research. Secondary literature is written by someone other than the author and could contain factual errors. To guide you through the process of researching and writing your paper, there are four term paper assignments. <br/>
 
<br/>
 
<br/>
  
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!style="background:#00CCCC;" width="450"|Details
 
!style="background:#00CCCC;" width="450"|Details
 
|-  
 
|-  
| 1st-2nd week||Library resources meeting||Times will be announced on this website; sign up on [http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT]
+
|Fri., Sept. 21||Term paper assignment #1: topic and outline||A brief description of your term paper topic, an outline, and a list of at least 3 references you plan to use, including at least one recent reference (2011 or later).  The references should be listed in the proper format for a "Literature Cited" section (see  [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/General_rules_for_citing_sources_in_scientific_writing citations page] for details).  Correspondence with your instructor about possible topics before this deadline is expected.
 
|-
 
|-
|Fri., Jan. 27||Term paper topic||A brief description of your term paper topic with a list of at least 3 references you plan to use, including at least one recent reference (2010 or later).  The references should be listed in the proper format for a "Literature Cited" section (see this pdf {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/eeb245W/EvolutionReferenceFormat.pdf}} and the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/General_rules_for_citing_sources_in_scientific_writing citations page] for details)Correspondence with your instructor about possible topics before this deadline is expected.
+
|Fri., Oct. 19||Term paper assignment #2: introduction||The Introduction should be about 500-700 words in length. Also, include a revised outline. This outline should take into account feedback received on the first assignment.   
 
|-
 
|-
|Wed., Feb. 1||Quiz 1: plagiarism and citations||[http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT]
+
|<strong>Week of Oct. 29</strong>||<strong>Instructor meetings</strong>||To discuss assignment #2.
 
|-
 
|-
|Wed., Feb. 1||Term paper assignment #1||Your instructor will provide guidelines.
+
|Fri., Nov. 16||Term paper assignment #3: complete draft||Turn in a complete draft of your term paper in the required format.  This should reflect a serious effort on your part to produce an already polished paper that you have edited (repeatedly) and proofread carefully.  The previously submitted portion should be revised in response to instructor feedback.
 
|-
 
|-
|<strong>Week of Feb. 6</strong>||<strong>Instructor meetings</strong>||To discuss assignment #1. Your instructor will provide sign up instructions.
+
|Fri., Dec. 7||Term paper assignment #4: revision||Final draft with revisions based on comments received on draft.  
|-
+
|Fri., Feb. 24||Quiz 2: characteristics of scientific writing||[http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT]
+
|-
+
|Fri., Feb. 24||Term paper assignment #2: partial draft||A draft of a portion of the term paper, ca. 1500 words (ca. 5 pages) in length.  This draft should take into account feedback received on the first assignment.  Your instructor may provide additional or alternative guidelines.
+
|-
+
|<strong>Week of March 5</strong>||<strong>Instructor meetings</strong>||To discuss assignment #2.
+
|-
+
|Fri., Mar. 30||Quiz 3: grammar||[http://huskyct.uconn.edu/webct/entryPageIns.dowebct HuskyCT]
+
|-
+
|Fri., Mar. 30||Term paper assignment #3: complete draft||Turn in a complete draft of your term paper in the required format.  This should reflect a serious effort on your part to produce an already polished paper that you have edited (repeatedly) and proofread carefully.  The previously submitted portion should be revised in response to instructor feedback.
+
|-
+
|<strong>Week of April 9</strong>||<strong>Instructor meetings</strong>||To discuss assignment #3.
+
|-
+
|Fri., April 27||Term paper assignment #4: revision||Final draft with revisions based on comments received on draft.  
+
 
|}
 
|}
 
<br/>
 
<br/>
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<table>
 
<table>
 
<tr>
 
<tr>
<td>Term paper assignment 1</td><td>10%</td>
+
<td>Term paper assignment 1 (topic and outline) </td><td>10%</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
<td>Term paper assignment 2 (partial draft)</td><td>15%</td>
+
<td>Term paper assignment 2 (introduction)</td><td>15%</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
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'''Grading notes'''
 
'''Grading notes'''
  
*Your grade in the W section is one quarter of your course grade in EEB 2245W.  In accordance with university regulations, a failing grade for this section will result in an ‘F’ for the entire course.   
+
*Your grade in the W section is one quarter of your course grade in EEB 2244W.  In accordance with university regulations, a failing grade for this section will result in an ‘F’ for the entire course.   
  
 
*3% of the points will be deducted for each day an assignment is late. However, each student is entitled to 2 free late days (the first 2 used, no questions asked).   
 
*3% of the points will be deducted for each day an assignment is late. However, each student is entitled to 2 free late days (the first 2 used, no questions asked).   
Line 135: Line 152:
 
*No assignment will be accepted until all previous requirements have been met.  For example, this means that you cannot submit a revised term paper unless you submitted, and received feedback on, a complete draft.
 
*No assignment will be accepted until all previous requirements have been met.  For example, this means that you cannot submit a revised term paper unless you submitted, and received feedback on, a complete draft.
  
*Quiz scores are not used in calculating W grades.  However, students must receive at least the minimum passing score indicated on HuskyCT prior to submitting the assignment due the same day.  Failure to complete the quizzes as required will result in late penalties for the associated assignment.  
+
*Quiz scores are not used in calculating W grades.  However, students must receive at least the minimum passing score indicated on HuskyCT prior to submitting the assignment 2.  
 
<br/>
 
<br/>
  
'''Grading rubric''':  [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=EEB2245W_Grading_Rubric This table] explains some of the major differences distinguishing strong, satisfactory and problematic papers.  Use this as a checklist to improve your grade.<br/><br/>
 
  
 +
==Checklist<br/>==
 +
<font color="#CC0000"><span style="font-size: larger">'''Use this checklist before submitting your draft.''' <font color="#000000">It will help you avoid common problems.  We also suggest that you review the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Term_Paper_Assignment term paper assignment] and any additional information provided by your instructor.
 +
 +
*Does your paper begin with an abstract that summarizes your main points?
 +
*Does your paper have a clear thesis statement?  See [http://uconnwritinginscience.files.wordpress.com/2008/05/245w_thesis_statements.pdf this blog entry] on thesis statements for more information (although it was written for EEB2245W, all the points it makes apply).
 +
*Does the introduction give readers enough context and background to follow your arguments?
 +
*Have you supported all of your claims with evidence from the primary literature?
 +
*Have you cited sources properly in the text and literature cited sections?  (See the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/General_rules_for_citing_sources_in_scientific_writing citation page] and quiz 1 on HuskyCT for reminders on how to do this).
 +
*Do you use at least 8 primary sources?
 +
*Does your paper have an informative title?
 +
*Have you formatted scientific names properly?  (See the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Scientific_writing_advice scientific writing tips sheet] for more information.)
 +
*Have you proofread a printed copy of your paper?  It helps to read the paper out loud.
 +
*Have you checked the spelling?  Remember that MSWord doesn't always know the scientific lingo, so don't assume it's right.  (For example, it will want to turn phylogenetic into phylogenic.  Don't let it!)
 +
*Did you follow the formatting and length requirements?
 +
<br/>
  
 
==Getting Help==   
 
==Getting Help==   
 
There are many resources available to help you succeed in this course, but you need to seek them out.  Good places to start are listed below.  Be sure to take advantage of these resources!   
 
There are many resources available to help you succeed in this course, but you need to seek them out.  Good places to start are listed below.  Be sure to take advantage of these resources!   
* the [[#EEB2245W Resources]] links below: these provide more information about specific assignments and tips to help you avoid common problems.
+
* the [[#EEB2244W Resources]] links below: these provide more information about specific assignments and tips to help you avoid common problems.
 
* the [http://www.writingcenter.uconn.edu UConn Writing Center]: the Writing Center offers individual meetings with tutors (it’s free).  Past experiences of students in this class have been very positive.
 
* the [http://www.writingcenter.uconn.edu UConn Writing Center]: the Writing Center offers individual meetings with tutors (it’s free).  Past experiences of students in this class have been very positive.
 
*Suegene Noh's [http://uconnwritinginscience.wordpress.com/ EEB 2245W blog]:  this blog was aimed toward students in 2245W during the Spring 2008 semester, but much of the information is still relevant and you are strongly encouraged to look at what Suegene has posted.
 
*Suegene Noh's [http://uconnwritinginscience.wordpress.com/ EEB 2245W blog]:  this blog was aimed toward students in 2245W during the Spring 2008 semester, but much of the information is still relevant and you are strongly encouraged to look at what Suegene has posted.
 
* your W instructor  <br/><br/>
 
* your W instructor  <br/><br/>
  
==EEB2245W Resources==
+
==EEB2244W Resources==
 
'''[[Term Paper Assignment]]'''
 
'''[[Term Paper Assignment]]'''
 
'''[[Tips for Getting Started]]'''
 
 
'''[[Possible Term Paper Topics]]'''
 
  
 
'''[[General rules for citing sources in scientific writing]]
 
'''[[General rules for citing sources in scientific writing]]
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'''[[Writing Tips]]'''
 
'''[[Writing Tips]]'''
  
[http://classguides.lib.uconn.edu/content.php?pid=293996 Library session information]
+
[http://classguides.lib.uconn.edu/content.php?pid=250431 Library session information]
 
+
+
 
+
 
+
 
+
 
+
 
+
 
+
 
+
 
+
 
+
 
+
  
  
  
 
[[Category:EEB Courses]]
 
[[Category:EEB Courses]]

Latest revision as of 15:29, 31 October 2012

Instructor

Dr. Peter Turchin | Office: TLS 462, Phone: 486-3603, e-mail: peter.turchin@uconn.edu

Announcements

Oct. 31

SCHEDULE OF MEETINGS WITH PROF. TURCHIN We will meet today (Wednesday, Oct. 31) at 2 pm as was annoubnced previously

The second meeting is Thursday, Nov. 1 at 5:00 pm

Both meetings will take place in my lab, TLS 462

Please e-mail to me if you are unable to come to one of these sessions.


Oct. 29

TUESDAY SESSION IS CANCELLED DUE TO HURRICANE SANDY


Oct. 26

MEETINGS NEXT WEEK

I will be sending graded second assignments to each of you by next Monday.

Next week I will also be meeting with all of you to discuss the progress so far and answer any questions that you might have. These meetings will take place in TLS 462 at the following times:

Tuesday Oct. 30 at 3:00 pm Wednesday Oct. 31 at 2:00 pm

Please sign up for one of these times by sending me an e-mail. Also let me know if you cannot make either of them, and I will try to find another time slot.


Sept. 24

EEB 2244W-Fall 2012 STUDENTS OF PROF. PETER TURCHIN

Assignment 1 has been graded (for almost all of you - who submitted on time). However, several people have still to submit this assignment to me, even though the deadline was last Friday. Note that it is your responsibility to keep track of deadlines and submit your work on time. All information you need is posted here:

http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/EEB2244W_Fall_2012:_Prof._Turchin

Some of you have asked me about information appearing on HuskyCT relevant to the W part. Ignore it, it's instructions from other faculty 'leaking in.' All you need to know and do is posted on my Eebedia page at the link above. (Obviously, don't ignore the non-W part of EEB2244!)

For your next assignment, which is due on Friday, Oct. 19 you need to submit

(1) A rough draft of the Introduction

(2) A revised outline, reflecting my comments on Assignment 1.

Remember that you are writing a scientific paper. The core of doing science is explaining things. So you paper should be not about describing something, but about explaining an interesting pattern or asking and answering an interesting question.

Usually there are more than one potential explanations - they are called hypotheses (note that singular is hypothesis, plural is hypotheses). Your paper's goal is to identify an interesting problem, discuss potential explanations (hypotheses), and review empirical studies that bear on these explanations.

The introduction is a key part, probably the most important part of the paper. It is structured as an 'inverted funnel' - wide at the beginning, narrow at the end. The first paragraph starts with the broad picture. In it you should explain why the general topic of your paper is important and interesting. Next you rapidly narrow down to the specific focus of your paper. Describe what you are trying to explain and what are the possible explanations.

In the last paragraph of the introduction provide the reader with a roadmap to the rest of your paper. Use direct language and first person (‘I’). You can say something like this, “In the first section I discuss this. In the next section I address the first hypotheses …” and so on.

The introduction should be short, around 500-700 words. Leave detailed discussion of the data for the main body of the paper.

Finally, note that you will be rewriting the Introduction two more times. The first one will be when you write the rough draft, because the stuff you end up putting in the main body will affect the structure of the introduction. The second time you will rewrite it as part of producing the final draft.

A final note: I will be traveling during the next two weeks, so we will communicate by e-mail. I will schedule meetings with all of you after I grade Assignment 2 (this will be during the week of Oct. 29).



Sept. 7

EEB 2244W-Fall 2012 INSTRUCTIONS TO THE STUDENTS OF PROF. PETER TURCHIN

The first thing you should do is go to this web site:

http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/EEB2244W_Fall_2012:_Prof._Turchin

Read carefully all materials posted there and follow the links in the last section, 'EEB2244W Resources'. Don't delay, because the first assignment is due soon. Read all the materials before you ask me questions! The answer is likely to be there.

ADDITIONAL INSTRUCTIONS

1. SUBMITTING YOUR WORK Submit your work in electronic form by e-mail. Documents in the old MS Word formats (*.doc) are preferred. If you use another word processor, save your text as Rich Text Format (*.rtf) and e-mail it to me. I will return your graded work also by e-mail. My comments will be added using the "Track Changes" feature in Word.

Your text should be SINGLE SPACED, 12 point. Don’t use underlining – use italics for emphasis.

2. ASSIGNMENT 1 INSTRUCTIONS Your Assignment 1 is to prepare an outline of your paper. The outline should be a bulleted/numbered list of phrases (not complete paragraphs). If you use Word, format it as "Outline Numbered" (under "Bullets and Numbering", at least in my version of Word). An example of an outline can be found here:

http://www.aresearchguide.com/1steps.html

(scroll down to Step 4, MAKE A TENTATIVE OUTLINE). In general, this web site gives excellent advice on writing a research paper.

Course Goals

The goals of this course are to help you learn to present your ideas and arguments in clear, well-organized prose and to introduce you to library research in biology. Because it is a science course, some of what you learn about writing will apply principally to scientific writing, but your efforts in this course will also translate into enhanced skills in other writing tasks.
The assignments are geared towards writing a term paper on a subject that interests you in ecology. It is very important that you devote time and thought to your choice of topic so that you enjoy the research that goes into this paper. Your instructor will help you. By the end of the course, you will be an expert on this topic!

Requirements

  • Meetings: All W students must sign up for and attend one library resources session during the 1st or 2nd week of classes. Sign-up is through HuskyCT. Failure to attend one of these sessions may result in being dropped from the W section.

  • Quizzes: All students must pass the online quizz on plagiarism, which will be administered through HuskyCT.

  • Assignments: The final written product in this course is a review paper that defends a significant claim in ecology using data from the primary literature. This paper should be 4500-5000 words in length (about 15 pages) and cite a minimum of 8 references from the primary literature. Primary literature is written by the author(s) of the scientific research. Secondary literature is written by someone other than the author and could contain factual errors. To guide you through the process of researching and writing your paper, there are four term paper assignments.


Plagiarism

Plagiarism is presenting someone else’s ideas or words as your own. In its most blatant form, it involves quoting without quotation marks or without proper attribution of credit, including doing so from another student’s paper or from a commercially available one. This form of plagiarism will result in an F for the course. Paraphrasing without giving credit or changing only a few words (i.e., paraphrasing too closely) even if you give credit are also examples of plagiarism. Penalties for these forms of plagiarism will range from a requirement to rewrite the assignment (if proper citations are included) to a 0 for the assignment to an F for the course (if proper citations are not included). Of course, you’ll be discussing the ideas of others in your paper, but you must express the ideas in your own words and cite the reference for each idea that is not your own in the text. Direct quotes, even with quotation marks, are to be used sparingly if at all (see writing tips/advice below).

Schedule and Deadlines

Due date Assignment Details
Fri., Sept. 21 Term paper assignment #1: topic and outline A brief description of your term paper topic, an outline, and a list of at least 3 references you plan to use, including at least one recent reference (2011 or later). The references should be listed in the proper format for a "Literature Cited" section (see citations page for details). Correspondence with your instructor about possible topics before this deadline is expected.
Fri., Oct. 19 Term paper assignment #2: introduction The Introduction should be about 500-700 words in length. Also, include a revised outline. This outline should take into account feedback received on the first assignment.
Week of Oct. 29 Instructor meetings To discuss assignment #2.
Fri., Nov. 16 Term paper assignment #3: complete draft Turn in a complete draft of your term paper in the required format. This should reflect a serious effort on your part to produce an already polished paper that you have edited (repeatedly) and proofread carefully. The previously submitted portion should be revised in response to instructor feedback.
Fri., Dec. 7 Term paper assignment #4: revision Final draft with revisions based on comments received on draft.


Grading

Term paper assignment 1 (topic and outline) 10%
Term paper assignment 2 (introduction)15%
Term paper assignment 3 (complete draft)25%
Term paper assignment 4 (final revision)50%


Grading notes

  • Your grade in the W section is one quarter of your course grade in EEB 2244W. In accordance with university regulations, a failing grade for this section will result in an ‘F’ for the entire course.
  • 3% of the points will be deducted for each day an assignment is late. However, each student is entitled to 2 free late days (the first 2 used, no questions asked).
  • No assignment will be accepted until all previous requirements have been met. For example, this means that you cannot submit a revised term paper unless you submitted, and received feedback on, a complete draft.
  • Quiz scores are not used in calculating W grades. However, students must receive at least the minimum passing score indicated on HuskyCT prior to submitting the assignment 2.



Checklist

Use this checklist before submitting your draft. It will help you avoid common problems. We also suggest that you review the term paper assignment and any additional information provided by your instructor.

  • Does your paper begin with an abstract that summarizes your main points?
  • Does your paper have a clear thesis statement? See this blog entry on thesis statements for more information (although it was written for EEB2245W, all the points it makes apply).
  • Does the introduction give readers enough context and background to follow your arguments?
  • Have you supported all of your claims with evidence from the primary literature?
  • Have you cited sources properly in the text and literature cited sections? (See the citation page and quiz 1 on HuskyCT for reminders on how to do this).
  • Do you use at least 8 primary sources?
  • Does your paper have an informative title?
  • Have you formatted scientific names properly? (See the scientific writing tips sheet for more information.)
  • Have you proofread a printed copy of your paper? It helps to read the paper out loud.
  • Have you checked the spelling? Remember that MSWord doesn't always know the scientific lingo, so don't assume it's right. (For example, it will want to turn phylogenetic into phylogenic. Don't let it!)
  • Did you follow the formatting and length requirements?


Getting Help

There are many resources available to help you succeed in this course, but you need to seek them out. Good places to start are listed below. Be sure to take advantage of these resources!

  • the #EEB2244W Resources links below: these provide more information about specific assignments and tips to help you avoid common problems.
  • the UConn Writing Center: the Writing Center offers individual meetings with tutors (it’s free). Past experiences of students in this class have been very positive.
  • Suegene Noh's EEB 2245W blog: this blog was aimed toward students in 2245W during the Spring 2008 semester, but much of the information is still relevant and you are strongly encouraged to look at what Suegene has posted.
  • your W instructor

EEB2244W Resources

Term Paper Assignment

General rules for citing sources in scientific writing

Scientific writing advice

Writing Tips

Library session information