Difference between revisions of "Biology of the Vertebrates"

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(Lecture Schedule & Materials)
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| || '''Part I: Aug 31 - Oct 14, Dr. Elizabeth Jockusch''' || || ||
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| || '''Part I: Aug 27 - Oct 10, Dr. Elizabeth Jockusch''' || || ||
 
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| Aug 31 || Vertebrate Diversity || ---------||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_1_.2831_August_2010.290 Study Questions''']<br>[http://www.arkive.org/species/GES/reptiles/Amblyrhynchus_cristatus/Amblyrhynchus_crist_09d.html?offset=0px Marine Iguana Running]<br> [http://www.arkive.org/species/GES/reptiles/Varanus_komodoensis/Varanus_komodoensis_06a.html Komodo Dragon Walking]<br>[http://debanlab.org/movies/ Salamander feeding videos]||
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| Aug 27 || Vertebrate Diversity || ---------||||
 
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| Sept 2 || Chordate and Vertebrate Origins || Ch. 1, 2 ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_2_.282_September_2010.29 Study Questions''']<br>
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| Aug 29 || Chordate and Vertebrate Origins || Ch. 1, 2 ||
 
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| Sept 7 || Living Jawless Vertebrates || Ch. 3 ||
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| Sept 4 || Living Jawless Vertebrates || Ch. 3 ||
'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_3_.287_September_2010.29 Study Questions''']
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<br> [http://www.youtube.com/watch?v=Gh9OOlgrHyA Urochordate heart beat]
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<br>[http://www.youtube.com/watch?v=pmaal7Hf0WA Hagfish Slime]
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<br>[http://www.youtube.com/watch?v=letqkpG3b5Q Hagfish on sea floor]
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<br>[http://jeb.biologists.org/content/vol210/issue22/images/data/3897/DC1/JEB006940Movie1.mov Hagfish feeding]
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| Sept 9<br><font color="#FF3300">'''Sept 10''' <font color="#FF3300">|| Early Vertebrate Fossils<br><font color="#FF3300">'''Groups Assigned for Video Project'''<font color="#FF3300"> {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/EEB2214/EEB2214F2010GroupAssignments.pdf}}|| Ch. 3 ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_4_.289_September_2010.29 Study Questions''']<br>[http://www.arkive.org/river-lamprey/lampetra-fluviatilis/video-07.html Lamprey Spawning]
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| Sept 6 || Early Vertebrate Fossils|| Ch. 3 ||
 
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| Sept 14 || Early Vertebrate Fossils & Chondrichthyans || Ch. 5 || '''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_5_.2814_September_2010.29 Study Questions]''' <br>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/EEB2214/SampleQuestions.pdf}} '''Sample Questions'''<br>[http://www.arkive.org/sand-tiger-shark/carcharias-taurus/video-09.html Male Sand Tiger Shark Swimming]<br>[http://www.arkive.org/whitetip-reef-shark/triaenodon-obesus/video-09.html Whitetip Reef Sharks Mating]<br>[http://www.arkive.org/leopard-shark/stegostoma-fasciatum/video-09.html Leopard Shark Courtship]<br>[http://www.arkive.org/lemon-shark/negaprion-brevirostris/video-09a.html Lemon Shark Birthing]
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| Sept 11 || Early Vertebrate Fossils & Chondrichthyans || Ch. 5 ||  
 
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| Sept 16 || Chondrichthyans & Osteichthyan Origins || Ch. 5, 6 ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_6_.2816_September_2010.29 Study Questions]'''<br>[http://www.arkive.org/tiger-shark/galeocerdo-cuvier/video-08.html Shark Feeding on Albatross]<br> [http://www.arkive.org/whale-shark/rhincodon-typus/video-08b.html Whale Shark Feeding]<br>[http://www.arkive.org/spotted-eagle-ray/aetobatus-narinari/video-08.html Eagle Ray Feeding/Locomoting]<br>[http://www.arkive.org/manta-ray/manta-birostris/video-08b.html Manta Ray Feeding]<br>
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| Sept 13 || Chondrichthyans & Osteichthyan Origins || Ch. 5, 6 ||
 
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| Sept 21 || Actinopterygians|| Ch. 6||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_7_.2821_September_2010.29 Study Questions''']<br>[http://www.youtube.com/watch?v=MF5Qq9mhrrw Paddlefish Feeding]<br>[http://www.youtube.com/watch?v=TbGILi8p5Y8&feature=related Fish Suction Feeding]<br>[http://www.youtube.com/watch?v=utuxlfvlLEQ Moray Eel Feeding (with Pharyngeal Jaw)]<br>
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| Sept 18 || Actinopterygians|| Ch. 6||
 
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| Sept 23<br>'''Sept 23'''<br><font color="#FF3300">'''Sept 24'''<font color="#FF3300"> || Sarcopterygii and Evolution of Tetrapods<br>'''Tree Workshop BPB 130 6:00PM'''<br><font color="#FF3300">'''Video Topic Submission Due<font color="#FF3300">''' || Ch. 9 (pp. 196-211) ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_8_.2823_September_2010.29 Study Questions''']<br> [http://www.arkive.org/coelacanth/latimeria-chalumnae/video-06.html Coelacanth]<br>[http://www.arkive.org/shoebill/balaeniceps-rex/video-08.html Lungfish vs. Bird]||  
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| Sept 20 || Sarcopterygii and Evolution of Tetrapods || Ch. 9 (pp. 196-211) ||
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| '''Sept 27'''<br> Sept 28 <br> '''Sept 28''' || '''Review Session BPB 131 6:00PM'''<br>Tetrapod Origins and Amphibian Diversity<br> '''Review Session BPB 130 6:00 PM'''|| Ch. 10 ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_9_.2828_September_2010.29 Study Questions''']<br>[http://www.youtube.com/watch?v=6K6szXrBHwM Caecilian Feeding]<br>[http://video.google.com/videoplay?docid=1983266083446767772#docid=-5359004945508340113 Salamander Pheromone Delivery]<br>[http://video.google.com/videoplay?docid=1983266083446767772# Salamander Sperm Transfer]<br>[http://www.arkive.org/chinese-giant-salamander/andrias-davidianus/video-06.html Giant Salamander]<br>
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| Sept 25 ||Tetrapod Origins and Amphibian Diversity || Ch. 10 ||
 
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| <span style="font-size: small"><font color="#FF3300">'''Sept 30'''</font></span>|| <span style="font-size: small"><font color="#FF3300">'''EXAM 1'''</font></span> includes material through the origin of tetrapod (but not amphibian diversity)|| --------- ||||  
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| <span style="font-size: small"><font color="#FF3300">'''Sept 27'''</font></span>|| <span style="font-size: small"><font color="#FF3300">'''EXAM 1'''</font></span> includes material through the origin of tetrapod (but not amphibian diversity)|| --------- ||||  
 
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| Oct 5 || Frogs || Ch. 10 ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_10_.285_October_2010.29 Study Question]'''<br>[http://www.youtube.com/watch?v=MLYWb5YRatc Slow Motion Jumping Frog]<br>[http://www.arkive.org/green-and-golden-bell-frog/litoria-aurea/video-08.html Frog Feeding on Frog]<br>[http://debanlab.org/bufo/ Toad Feeding]<br>[http://www.youtube.com/watch?v=2k5CTLNw04w Gray Treefrog Calling]<br>[http://www.youtube.com/watch?v=tSzhjqwB8C4 Screaming Frog]<br>[http://www.arkive.org/common-toad/bufo-bufo/video-09b.html Toad Amplexus]<br>[http://people.bu.edu/kwarken/KWvideo.html Red-eyed Treefrog Eggs Hatching]<br>[http://www.youtube.com/watch?v=mZ7b4spjXhw Suriname Toad Reproduction]<br>[http://www.arkive.org/corroboree-frog/pseudophryne-corroboree/video-09.html Corroboree Frog Reproduction]<br>
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| Oct 2 || Amphibian Evolution || Ch. 10 ||
 
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| Oct 7<br><font color="#FF3300">'''Oct 8'''<font color="#FF3300"> || Amphibian Declines<br><font color="#FF3300">'''Video Project Synopsis Due'''<font color="#FF3300"> || Ch. 10 ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_11_.287_October_2010.29 Study Questions]'''<br> [http://www.arkive.org/tomato-frog/dyscophus-antongilii/video-10.html Frog vs. Snake]<br>[http://www.arkive.org/lake-titicaca-frog/telmatobius-culeus/video-00.html Lake Titicaca Frog]<br>[http://www.arkive.org/golden-toad/incilius-periglenes/video-09.html Golden Toad Mating]||  
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| Oct 4 || Amphibian Declines || Ch. 10 ||
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| Oct 12 || Amniote Origins / Lepidosaurs || Ch. 9 (pp. 211-218), Ch. 13 ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_12_.2812_October_2010.29 Study Questions]'''<br>[http://www.californiaherps.com/movies/emmulticarinatatail310.mov Tail Autonomy]||  
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| Oct 9 || Amniote Origins / Lepidosaurs || Ch. 9 (pp. 211-218), Ch. 13 ||
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| Oct 14 || Evolution of Snakes || Ch. 13 (pp. 339-349) ||'''[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/Biology_of_the_Vertebrates_Study_Questions_F2010#Lecture_13_.2814_October_2010.29 Study Question]'''<br>[http://www.arkive.org/namaqua-chameleon/chamaeleo-namaquensis/video-10.html Namib Chameleon]<br>[http://www.youtube.com/watch?v=gEl6TXrkZnk&p=A96C593F525E5B24&playnext=1&index=42 Blood Squirting in Horned Lizards]<br>[http://www.youtube.com/watch?v=5-qEt1J5LDU Snake Eating Crab]
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| Oct 11 || Evolution of Snakes || Ch. 13 (pp. 339-349) ||
 
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Revision as of 18:29, 21 August 2012

Vertbunch60.gif

EEB 2214, Fall 2010
The evolution of form, function,
& diversity of the vertebrates

Meeting Time: Tuesdays and Thursdays, 12:30-1:45 in BPB130
Textbook: Pough F. H., C. M. Janis, and J. B. Heiser. 2009. Vertebrate Life, 8th Edition. Prentice Hall.

Instructors

Dr. Elizabeth Jockusch
Office: Biology/Pharmacy 305B
Phone: (860) 486-4452
Office hours: Tuesdays, 2-3 pm, and by appointment

Dr. Margaret Rubega
Note: All emails must contain "EEB2214" in the subject line to avoid being filtered out and deleted
Office: Biology/Pharmacy 500
Phone: (860) 486-4502
Office hours: Thursdays 11:30 am -12:30 pm and by appointment

Elizabeth Timpe (Teaching Assistant)
Office: Biology/Pharmacy 322
Phone: (860) 486-6215
Office hours: Thursdays, 2-3:45 pm and by appointment

Grading

Exam 1 = 100 points (25%)
Exam 2 = 100 points (25%)
Exam 3 = 100 points (25%)
Collections Tour = 10 points (2.5%)
Video Project = 90 points (22.5%)

There will be two one-hour, non-cumulative, exams scheduled during the lecture hour. During the final exam period, a third one-hour exam will be given covering material from the final third of the course. Details about the collections tour and video project will be provided later in the semester.

Collections Tours

Every student is expected to visit the EEB Biological Collections for a tour that will introduce you to the resources and opportunities in the collection. We will offer 10 different opportunities, on different days and times. You will need to sign in at the collection; at the end of the semester, everyone who has signed in, will have 10 points added to their grade. Tours will take about 45 minutes, they meet at the south end of the Biology/Physics building lobby on the hour. You are responsible for finding a day and time to attend from the options below; if your class schedule prohibits you from attending any of these, you are responsible for letting us know that you will need an alternate opportunity BEFORE THE LAST WEEK OF CLASS. If you have already toured the collections (e.g., in a previous class with me or another instructor), provide me with documentation to that effect, and we will just add the 10 points to your grade without you needing to tour the collections again.

Available tour days/times:
Thurs, Nov. 11, 2 pm
Fri., Nov. 12, 2 pm
Thurs Nov. 18, 11 am & 3 pm
Tues, Nov. 30, 2 pm
Weds, Dec. 1, 5 pm
Thurs, Dec. 2, 9 am
Mon., Dec. 6, 11 am
Tues., Dec. 7, 10 am
Weds. Dec. 8, 12 pm

Course Policies

Missed Exams:
Any student who does not attend an exam and fails to receive permission in advance will receive a 0 for the exam. Approval of any request to miss an exam requires, but is not guaranteed by, verifiable written documentation of the reason. A student who receives approval to miss an exam will have his or her grade for the missed exam prorated based on his or her performance on the remainder of the exams. We will not give make-up exams. Every student must take the final (exam 3). Permission to reschedule the final can only be obtained through procedures determined by the Office of Student Services and Advocacy.


Academic Integrity:
Plagiarism and cheating are violations of the student conduct code, and may be punished by failure in the course or, in severe cases, dismissal from the University. For more information, see Section IV of the Student Conduct Code.

Disabilities:
If you have a disability for which you may be requesting an accommodation, you should contact a course instructor and the Center for Students with Disabilities (Wilbur Cross Building, Room 201) within the first two weeks of the semester.

Help Resources

The secret of success to this course is to not let yourself fall behind. Be sure to fill gaps in your notes and navigate blocks in your understanding as soon as possible. Should you run into trouble with the material, below we have listed some steps for obtaining assistance. While we welcome any and all questions on the material, before you contact us, please first check the resources below to see if your question has already been answered. If/when you do contact us, please understand that we will respond as quickly as we can, but we do have other obligations that might prevent this from happening as urgently as you may need (like 3:00 am the day of an exam...).

FAQ's:

Can I convert this course to honors?

Study Materials:

Study Questions
Pdficon small.gif Exam1 Study Guide
Pdficon small.gifPhylogeny Tutorial
Pdficon small.gifTree Quiz
Pdficon small.gifVertebrate Phylogeny
Pdficon small.gifAmniota Phylogeny Worksheet


Video Assignment:

Video Project



Review Sessions:
Phylogenetic Trees Workshop: Thursday, September 23, 6:00PM Room BPB130
Exam 1 Review: Monday, September 27, 6:00PM, Room BPB 131 NOTE: BPB 131 is right next door to our usual classroom
Exam 1 Review: Tuesday, September 28, 6:00PM, Room BPB 130
Exam 2 Review: Monday, November 1, 6:00PM, Room BPB 131 NOTE: BPB 131 is right next door to our usual classroom
Exam 3 Review: Monday, December 13th, 7:00PM, Room BPB 131 NOTE BPB 131 is right next door to our usual classroom

Links to External Resources:

DigiMorph - Excellent source of 2 & 3D images of internal & external structures of various organisms
ARKive - a unique collection of thousands of wildlife videos, images and fact-files, with a special focus on the world's threatened species


Vertebrates in the News

Pea-sized frog found in Borneo 30 August 2010

Pea-sized Frog.jpg


Declines in Northern Spotted Owl Populations 7 September 2010
The Language of Bats 20 September 2010
Fossil Snake 20 September 2010
Florida Panthers' Genetic Rescue 23 September 2010
Toiling to Save a Threatened Frog 4 October 2010
Pterosaur Reptile Used "Pole Vault" Trick for Take-off 16 November 2010
New Frog Species Found in Hunt for Old Ones 16 November 2010

Lecture Schedule & Materials

Date Topic Readings Supplemental materials
Part I: Aug 27 - Oct 10, Dr. Elizabeth Jockusch
Aug 27 Vertebrate Diversity ---------
Aug 29 Chordate and Vertebrate Origins Ch. 1, 2
Sept 4 Living Jawless Vertebrates Ch. 3
Sept 6 Early Vertebrate Fossils Ch. 3
Sept 11 Early Vertebrate Fossils & Chondrichthyans Ch. 5
Sept 13 Chondrichthyans & Osteichthyan Origins Ch. 5, 6
Sept 18 Actinopterygians Ch. 6
Sept 20 Sarcopterygii and Evolution of Tetrapods Ch. 9 (pp. 196-211)
Sept 25 Tetrapod Origins and Amphibian Diversity Ch. 10
Sept 27 EXAM 1 includes material through the origin of tetrapod (but not amphibian diversity) ---------
Oct 2 Amphibian Evolution Ch. 10
Oct 4 Amphibian Declines Ch. 10
Oct 9 Amniote Origins / Lepidosaurs Ch. 9 (pp. 211-218), Ch. 13
Oct 11 Evolution of Snakes Ch. 13 (pp. 339-349)
Part II: Oct 19 - Dec 16, Dr. Margaret Rubega
Oct 19 Turtles Ch. 12 UPDATED Available Video Meeting Times
Ophir et al. 2009 Why you shouldn't text in class
Study Questions
Turtles Digging a Nest
Turtle Laying Eggs
Turtle Hatchlings Emerging
Turtle Hatchlings Heading to the Water
Oct 21 Introduction to Archosaurs & Crocodilians Ch. 16 Pdficon small.gifAmniota Phylogeny Worksheet
Study Questions
Alligator Walking
Croc Galloping
Alligator Courtship
Female Crocodile Digging Out Hatchlings
Oct 26 Archosaurs: Pterosaurs Ch. 16 Pdficon small.gifAmniota Synapomorphy Worksheet
Study Questions
Pterosaur Locomotion
Oct 28 Dinosaurs and Other Mesosoic Diapsids Ch. 16 Study Questions
Nov 1
Nov 2
Review Session BPB 131 6:00PM
EXAM 2 includes material beginning with Lissamphibia and ending on Saurichia (includes all of Thursday's lecture material)
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Nov 4 Dinosaurs II - Theropods Ch. 16 Study Questions
Nov 9 Birds: Avian Origins Ch. 16 (pp. 439-443) Study Questions
Wing-assisted Incline Running
Nov 11 Birds: Feeding, Morphology, and Reproduction Ch. 17 Study Questions
Nov 16 Birds: Reproduction, and Introduction to Mammals Ch. 17 Study Questions
Nov 18 Mammals: Origins and Radiation
Video Project Due
Ch. 18 Study Questions
Nov 30 Mammals: Primate Evolution and Human Diversity Ch. 24 Study Questions
Dec 2 Mammals: Primate Evolution continued and Mammal Diversity
Ch. 20 Study Questions
Dec. 7 Vertebrate Mass Extinctions, Past and Present
Evaluations of 5 Group Videos Due by 5 pm
Ch. 21 Study Questions
Dec 9 Vertebrate Mass Extinctions, Past and Present Ch. 25 Study Questions
Thylacine Wolf
Dec 13
Dec 16
Review Session BPB 131 7:00PM
EXAM 3 (FINAL) 10:30 am-12:30 pm
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