Phylogenetics: Searching Lab
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Part B: Searching under the parsimony criterion
- Create the data file. Start PAUP*, press the Cancel button to dismiss the "Open" dialog box that appears, and choose File > New from the main menu. This will open a new, empty text edit window. Click here to see the data, use Ctrl-a to copy all of it, then paste it into the editor window in PAUP*. Save the file as angio35.nex.
- Create a command file. Once again choose File > New from the main menu to create a second blank file, then type in the following text, saving this as run.nex:
#nexus begin paup; log file=output.txt start replace; execute angio35.nex; end;
Go back to part a: Using PAUP* to check your answers for homework #2