Difference between revisions of "Phylogenetics: Searching Lab"
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== Part B: Searching under the parsimony criterion == | == Part B: Searching under the parsimony criterion == | ||
− | # '''Create the data file.''' Start PAUP*, press the Cancel button to dismiss the "Open" dialog box that appears, and choose File > New from the main menu. | + | # '''Create the data file.''' Start PAUP*, press the Cancel button to dismiss the "Open" dialog box that appears, and choose File > New from the main menu. This will open a new, empty text edit window. Click [http://hydrodictyon.eeb.uconn.edu/people/plewis/courses/phylogenetics/labs/angio35.nex here] to see the data, use Ctrl-a to copy all of it, then paste it into the editor window in PAUP*. Save the file as angio35.nex. |
# '''Create a command file.''' Once again choose File > New from the main menu to create a second blank file, then type in the following text, saving this as run.nex:<pre>#nexus begin paup; log file=output.txt start replace; execute angio35.nex; end;</pre> | # '''Create a command file.''' Once again choose File > New from the main menu to create a second blank file, then type in the following text, saving this as run.nex:<pre>#nexus begin paup; log file=output.txt start replace; execute angio35.nex; end;</pre> | ||
+ | # | ||
[[Parsimony Lab|Go back to part a: Using PAUP* to check your answers for homework #2]] | [[Parsimony Lab|Go back to part a: Using PAUP* to check your answers for homework #2]] |
Revision as of 03:04, 29 January 2007
This article is part of an EEB course. Please do not edit the content of this page without the approval of the course instructor. |
Part B: Searching under the parsimony criterion
- Create the data file. Start PAUP*, press the Cancel button to dismiss the "Open" dialog box that appears, and choose File > New from the main menu. This will open a new, empty text edit window. Click here to see the data, use Ctrl-a to copy all of it, then paste it into the editor window in PAUP*. Save the file as angio35.nex.
- Create a command file. Once again choose File > New from the main menu to create a second blank file, then type in the following text, saving this as run.nex:
#nexus begin paup; log file=output.txt start replace; execute angio35.nex; end;
Go back to part a: Using PAUP* to check your answers for homework #2