Difference between revisions of "Evolutionary Biology Spring 2013"
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'''Note:''' because you are allowed to drop your lowest score, '''''we will not give make-up exams.'''''<br><br> | '''Note:''' because you are allowed to drop your lowest score, '''''we will not give make-up exams.'''''<br><br> | ||
− | '''EEB 2245W:''' Your final grade in the lecture portion of the course will be calculated as above. If you are taking the W version of the course, that grade will constitute 75% of your final course grade. Your grade in the '''W part''' of the course, as determined by your “W” instructor, will constitute the remaining 25% of your final course grade, '''''except that an F in the W part of the course will result in an F for the entire course. An F in the lecture part of the course will also result in an F for the entire course.''''' Refer to the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/ | + | '''EEB 2245W:''' Your final grade in the lecture portion of the course will be calculated as above. If you are taking the W version of the course, that grade will constitute 75% of your final course grade. Your grade in the '''W part''' of the course, as determined by your “W” instructor, will constitute the remaining 25% of your final course grade, '''''except that an F in the W part of the course will result in an F for the entire course. An F in the lecture part of the course will also result in an F for the entire course.''''' Refer to the [http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/EEB2245W_Spring_2013 2245W website] for further information. '''[mailto:kristiina.hurme@uconn.edu Dr. Kristiina Hurme] (TLS 379A; tel: 486-5434; kristiina.hurme@uconn.edu)''' is the coordinator of the W part of the course. |
<br><br> | <br><br> | ||
+ | |||
+ | ==Announcements== | ||
+ | '''31 January 2013:''' Note that we will continue to post revised hardcopy versions of the '''course syllabus''' on the web site, reflecting changes that have already been recorded in the web version of the syllabus (below). The link to it is under '''"Course Resources,"''' below.<br> | ||
+ | |||
+ | '''4 February 2013:''' A study guide for the first lecture exam has been posted. The link to the guide can be found under '''"Course Resources,"''' below, and within the on-line syllabus. If we modify this study guide between now and February 14th, I will post an announcement here and the new version will automatically replace the old one.<br> | ||
+ | |||
+ | '''6 February 2013:''' Under '''"Course Resources,"''' below, we have posted a few sample exam questions to help you study for the first lecture exam. Because of various changes in the course format, we have no complete lecture exams from previous years to post.<br> | ||
+ | |||
+ | '''7 February 2013:''' In preparation for the review sessions coming up on Monday and Tuesday, you can '''e-mail specific questions''' to your TA that can then be answered and discussed at the review sessions.<br> | ||
+ | |||
+ | '''10 February 2013:''' Cancellation of all UConn classes on Monday, 11 February, means that we also must cancel the Monday review session (see below). Instead, all students interested in attending a review session should show up at the Tuesday review session. Both TAs will be present at that session (Biophysics Building 131).<br> | ||
+ | |||
+ | '''18 February 2013:''' Answer keys for Exam 1 (both versions) have been posted below, under '''"Course Resources."''' If one thing has emerged from your overall performance on this exam, it is the importance of '''attending lecture'''. Simply studying from the lecture slides and book is usually not enough; I add explanatory material when I lecture, and I suggest which points are important and which ones are not. It's a relatively easy, painless way to improve your performance in the exams.<br> | ||
+ | |||
+ | '''27 February 2013:''' A study guide for the second lecture exam has been posted. The link to the guide can be found under '''"Course Resources,"''' below, and within the on-line syllabus. If we modify this study guide between now and March 7th, I will post an announcement here and the new version will automatically replace the old one.<br> | ||
+ | |||
+ | '''28 February 2013:''' In preparation for the review sessions coming up on Monday and Tuesday, you can '''e-mail specific questions''' to your TA that can then be answered and discussed at the review sessions.<br> | ||
+ | |||
+ | '''6 March 2013:''' Brigette has prepared her own study guide for the second lecture exam, which I have posted below under '''"Course Resources."''' There are two versions, one '''with answers''' and the other '''without.'''<br> | ||
+ | |||
+ | '''12 March 2013:''' Answer keys for Exam 2 (both versions) have been posted below, under '''"Course Resources."''' The first (top) key is to version 1; the second (bottom) key is to version 2. <br> | ||
+ | |||
+ | '''14 March 2013:''' Systematics study guide posted (covers first three systematics lectures) | ||
==Course Resources== | ==Course Resources== | ||
− | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_syllab_Spr_2013_Dec18.pdf}} EEB2245 '''syllabus''' (printable) <br> | |
− | ''' | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_Studyguide1_Henry_2245.pdf}} Study Guide for '''Exam 1''' (latest version)<br> |
− | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/ | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_1_2245_sample_ques_2013.pdf}} '''Sample exam questions''' to help you study for Exam 1.<br> |
− | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/ | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_Exam1_keys_2013.pdf}} '''Key to Exam 1'''. Version 1 (blue exam) and Version 2 (pink exam) are shown, in that order, followed by answers to the written questions.<br> |
− | '''EXAM 2''' | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam2_Studyguide_Henry_2245.pdf}} Study Guide for '''Exam 2''' (latest version)<br> |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_2_2245_sample_ques_with_answers_2013.pdf}} '''Sample exam questions''' to help you study for Exam 2.<br> | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_Studyguide_Exm2_Brigette_2013.pdf}} Brigette's Study Guide for '''Exam 2'''<br> | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_Studyguide_Exm2answers_Brigette_2013.pdf}} Brigette's Study Guide for '''Exam 2''', with answers<br> | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_Exam2_keys_Spr2013.pdf}} '''Key to Exam 2'''. Version 1 (yellow exam) and Version 2 (green exam) are shown, in that order, followed by answers to the written questions.<br> | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB%202245%20Exam%203%20%20Versions%201%20%26%202%20Answer%20Key.PDF}} '''Key to Exam 3'''. EEB 2245 Versions 1 & 2.PDF <br> | ||
+ | |||
+ | ==Study guides for Second Half of Course can be found below alongside the lecture notes== | ||
+ | |||
+ | |||
+ | <!--'''EXAM 2''' | ||
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam%202%20S2010.pdf}} Example of Exam 2 (from 2010)<br> | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam%202%20S2010.pdf}} Example of Exam 2 (from 2010)<br> | ||
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%20Exam%202_2012_final.pdf}} FINAL Study Guide for Exam 2<br> | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%20Exam%202_2012_final.pdf}} FINAL Study Guide for Exam 2<br> | ||
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB%202245_W_S12_tree_exercises_rev.pdf}} Tree Exercises for Exam 2 (with answers)<br><br> | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB%202245_W_S12_tree_exercises_rev.pdf}} Tree Exercises for Exam 2 (with answers)<br><br> | ||
'''EXAM 3''' | '''EXAM 3''' | ||
− | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_Studyguide1_Henry_2245.pdf}} FINAL Study Guide for Exam 3 (first 7 lectures) <br><br> | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_Studyguide1_Henry_2245.pdf}} FINAL Study Guide for Exam 3 (first 7 lectures) |
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB%202245%20Systematics%20studyguide.%20Sp%2013.pdf}}EEB 2245 Systematics studyguide. Sp 13.pdf '''Systematics Study Guide for the first three lectures.<br> | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%208%20Clocks%2C%20Life%20Sp%2013.docx}}Study Guide 8 Clocks, Life Sp 13.docx | ||
+ | <br><br> | ||
'''EXAM 4 (FINAL)''' | '''EXAM 4 (FINAL)''' | ||
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_Studyguide_2245_final_exam.pdf}} FINAL Study Guide for Exam 4 (last 6 lectures) <br><br> | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_Studyguide_2245_final_exam.pdf}} FINAL Study Guide for Exam 4 (last 6 lectures) <br><br> | ||
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3) Keys of Practice Exam 2 will be posted outside your TA's office sometime on Monday. If you want to check your answers against the key, please do so before '''Wednesday''' night!! The BioPharmacy building's hallways lock up from 6PM - 7:30AM, so you will not have access to the exam keys between these times!<br><br> | 3) Keys of Practice Exam 2 will be posted outside your TA's office sometime on Monday. If you want to check your answers against the key, please do so before '''Wednesday''' night!! The BioPharmacy building's hallways lock up from 6PM - 7:30AM, so you will not have access to the exam keys between these times!<br><br> | ||
4) See below for the time and locations of the Exam 2 review sessions.<br><br>--> | 4) See below for the time and locations of the Exam 2 review sessions.<br><br>--> | ||
+ | |||
+ | ==More Course Resources: A sample of current evolution-themed Massive Open Online Courses (check them out!)== | ||
+ | |||
+ | Stephen Stearns, EEB, Yale, at Academic Earth | ||
+ | http://www.academicearth.org/courses/evolution-ecology-and-behavior | ||
+ | |||
+ | and also on Udemy | ||
+ | http://www.udemy.com/evolution-ecology-and-behavior-122-with-stephen-c-stearns/ | ||
+ | |||
+ | A set of tutorials, more for secondary school | ||
+ | http://virtualurchin.stanford.edu/index.html | ||
+ | |||
+ | Introduction to Genetics and Evolution with Mohamed Noor by Duke on Coursera | ||
+ | https://www.coursera.org/course/geneticsevolution | ||
+ | |||
+ | This Michigan State University MOOC focuses on Foundations of Science, but also includes components on evolution and creationism | ||
+ | http://foundations-of-science.zoology.msu.edu/ | ||
+ | |||
+ | Stanford Human Behavioral Biology | ||
+ | http://www.youtube.com/watch?v=NNnIGh9g6fA&feature=results_video&playnext=1&list=PL848F2368C90DDC3D | ||
+ | |||
+ | Khan Academy has material on Hardy-Weinberg principle | ||
+ | https://www.khanacademy.org/ | ||
+ | |||
==Review Sessions== | ==Review Sessions== | ||
− | + | '''Updated 29 January 2013''' -- There will be '''two''' review sessions for the first exam on Thursday, February 14th. They will be:<br> | |
+ | |||
+ | '''** CANCELLED ** ''' '''Monday, February 11th, 6-8PM''' in '''BioPhysics Building Rm 130''' (students L-Z, Brigette Z.), and <br> | ||
+ | |||
+ | '''Tuesday, Feburary 12th, 6-8PM''' in '''BioPhysics Building Rm 131''' (NOW OPEN TO ALL STUDENTS).<br><br> | ||
+ | |||
+ | Review sessions are structured to answer any questions you might have encountered while studying or going over the example exam. Please come to the review session with specific questions -- or, you can e-mail questions to your TA ahead of time. If you can not attend either review session but have questions pertaining to the course material prior to the exam please contact your assigned TA to set up a time to meet.<br><br> | ||
+ | |||
+ | '''Updated 28 February 2013''' -- There will be '''two''' review sessions for the second exam on Thursday, March 7th. They will be:<br> | ||
+ | |||
+ | '''Monday, March 4th, 6-8PM''' in '''BioPhysics Building Rm 130''' (students L-Z, Brigette Z., primary), and <br> | ||
+ | |||
+ | '''Tuesday, March 5th, 6-8PM''' in '''BioPhysics Building Rm 131''' (students A-K, Geert G., primary).<br><br> | ||
==Evolution in the News== | ==Evolution in the News== | ||
+ | |||
+ | '''5 February 2013''', New York Times online: [http://www.nytimes.com/2013/02/05/science/pigeons-a-darwin-favorite-carry-new-clues-to-evolution.html?nl=todaysheadlines&emc=edit_th_20130205&_r=0 '''Darwin and pigeon breeding''']<br> | ||
+ | |||
+ | '''19 February 2013''', New York Time online: [http://www.nytimes.com/2013/02/15/science/studying-recent-human-evolution-at-the-genetic-level.html?_r=0&adxnnl=1&ref=nicholaswade&adxnnlx=1361304442-IlXZTaEjSf92NjFjxUY2ow '''East Asian Physical Traits Linked to 35,000-Year-Old Mutation''']<br> | ||
+ | |||
+ | '''20 February 2013''', Nature online [http://www.nature.com/news/superstars-of-botany-rare-specimens-1.10498 '''Superstars of Botany: Rare Specimens''']<br> | ||
+ | |||
+ | '''20 February 2013''', Imgur.com [http://imgur.com/gallery/at1rB '''Nothing is stranger than reality'''] -- This entertaining sequence of panels about courtship and mating in an angler fish is actually very accurate. It's good to bear in mind that sexual selection does not always produce large, powerful males!<br> | ||
+ | |||
+ | '''12 March 2013''', New York Times online: [http://www.nytimes.com/2013/03/12/science/solving-the-puzzles-of-mimicry-in-nature.html?nl=todaysheadlines&emc=edit_th_20130312&_r=0 '''Solving the puzzles of mimicry in nature''']<br> | ||
+ | |||
+ | '''11 April 2013''', YouTube: [http://www.phdcomics.com/tv/#035 '''Convergent evolution of crushing jaws in hyenas and dogs''']<br> | ||
+ | |||
+ | '''22 April 2013''', Nature online: [http://www.nature.com/nature/journal/v496/n7445/full/nature12027.html '''The African coelacanth genome provides insights into tetrapod evolution''']<br> | ||
+ | |||
+ | '''2 May 2013''', New York Times online: [http://p.nytimes.com/email/re?location=4z5Q7LhI+KVBjmEgFdYACPLKh239P3pgo+D6xnBRSHgcEj1EoJVZbzVAcnwBB6m5ZsQ5/pTLaC0/b4fFobbfVaTtMutF1bl6/fY6AH1rUkbzQPfENmgP1RhBv7P/hndWkaZjaWII+sop6695ExRRB8sXDevln5kK&campaign_id=129&instance_id=28305&segment_id=46124&user_id=36be250f60e2523e4b615b148f8e7fda '''Emergence of Brood II Cicadas: Here comes the buzz''']<br> | ||
+ | |||
+ | ==Books to read== | ||
+ | '''Your Inner Fish: A journey into the 3.5 billion year history of the human body'''<br> | ||
+ | By Neil Shubin (who found Tiktaalik!)<br> | ||
+ | [http://www.amazon.com/Your-Inner-Fish-Journey-3-5-Billion-Year/dp/0307277453 Buy it here] | ||
+ | <br> | ||
+ | '''The Voyage of the Beagle'''<br> | ||
+ | By Charles Darwin<br> | ||
+ | [http://www.amazon.com/Voyage-Beagle-Charles-Darwin/dp/1619492814/ref=sr_1_1?s=books&ie=UTF8&qid=1368044400&sr=1-1&keywords=darwin+voyage+of+the+beagle Buy it here] | ||
<!--[http://www.physorg.com/news/2012-02-evolutionary.html '''Peppered moths vindicated!'''] - 28 February 2012<br> | <!--[http://www.physorg.com/news/2012-02-evolutionary.html '''Peppered moths vindicated!'''] - 28 February 2012<br> | ||
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==Lecture Syllabus== | ==Lecture Syllabus== | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245%20Syllabus%20Sp%202013%202%20Apr%2013.pdf}}EEB2245 Syllabus Sp 2013 2 Apr 13.pdf | ||
+ | |||
'''''Please read assigned chapters, as indicated below, prior to class''''' | '''''Please read assigned chapters, as indicated below, prior to class''''' | ||
{| border="1" cellpadding="1" | {| border="1" cellpadding="1" | ||
− | !width="40"| | + | !width="40"|Class |
!width="40"|Day | !width="40"|Day | ||
!width="110"|Date | !width="110"|Date | ||
− | !width=" | + | !width="400"|Topic |
!width="185"|Text Readings | !width="185"|Text Readings | ||
|- | |- | ||
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|- | |- | ||
| 1 || T || Jan 22 || Populations, variation, & the Hardy-Weinberg principle | | 1 || T || Jan 22 || Populations, variation, & the Hardy-Weinberg principle | ||
− | + | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec1_variation.pdf}} '''Populations, Variation, and H-W Lecture''' | |
− | || Ch. 1 (pgs 7-11), 9 | + | || Ch. 1 (pgs 7-11), 9, & 13 |
|- | |- | ||
|- | |- | ||
− | | 2 || Th || Jan 24 || Agents of evolutionary change: migration and | + | | 2 || Th || Jan 24 || Agents of evolutionary change: Mutation and gene flow (migration) |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec2_popgen_muta%26migra.pdf}} '''Mutation and Gene Flow Lecture''' | ||
+ | || Ch. 9 | ||
|- | |- | ||
|- | |- | ||
− | | 3 || T || Jan 29 || | + | | 3 || T || Jan 29 || Sampling error: genetic drift and the bottleneck/founder effects |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec3_genetic_drift.pdf}} '''Genetic Drift Lecture''' | ||
+ | || Ch. 10 | ||
|- | |- | ||
|- | |- | ||
− | | 4 || Th || Jan 31 || | + | | 4 || Th || Jan 31 || Charles Darwin and natural selection, part 1 |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec4_selection1.pdf}} '''Natural Selection Lecture, Part 1''' | ||
+ | || Ch. 1 & 11 | ||
|- | |- | ||
|- | |- | ||
− | | 5 || T || Feb 5 || | + | | 5 || T || Feb 5 || Natural selection, part 2 |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec5_selection2.pdf}} '''Natural Selection Lecture, Part 2''' | ||
+ | || Ch. 11, 12, & 13 | ||
|- | |- | ||
|- | |- | ||
− | | 6 || Th || Feb 7 || | + | | 6 || Th || Feb 7 || Adaptation and life-history evolution, part 1 |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec6_adaptation.pdf}} '''Adaptation and Life History 1 Lecture''' | ||
+ | || Ch. 13 & 14 | ||
|- | |- | ||
|- | |- | ||
− | | || '''''M''''' || '''''Feb 11''''' || '''''Review Session for Exam 1 <br>6-8 PM''''' || '''''BioPhysics Building Rm | + | | || '''''M''''' || '''''Feb 11''''' || '''''Review Session for Exam 1 <br>6-8 PM''''' || '''''BioPhysics Building Rm 130''''' |
|- | |- | ||
|- | |- | ||
− | | 7 || T || Feb 12 || | + | | 7 || T || Feb 12 || Life history evolution, part 2 |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec7_lifehistory.pdf}} '''Life History Evolution Lecture, Part 2''' | ||
+ | || Ch. 14 | ||
|- | |- | ||
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|- | |- | ||
− | |<span style="font-size: small"><font color="#FF3300">'''8'''</font></span>||<span style="font-size: small"><font color="#FF3300">'''Th'''</font></span>||<span style="font-size: small"><font color="#FF3300">'''Feb 14'''</font></span>||<span style="font-size: small"><font color="#FF3300"> '''EXAM #1'''<br>'''You may bring a calculator (NO iphone/smartphone)''' | + | | <span style="font-size: small"><font color="#FF3300">'''8'''</font></span> ||<span style="font-size: small"><font color="#FF3300">'''Th''' </font></span>||<span style="font-size: small"><font color="#FF3300"> '''Feb 14''' </font></span>|| <span style="font-size: small"><font color="#FF3300">'''EXAM #1'''<br>'''You may bring a calculator (NO iphone/smartphone)''' <br> {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam_Studyguide1_Henry_2245.pdf}} '''Study Guide for Exam 1''' </font></span>|| <span style="font-size: small"><font color="#FF3300">'''Covers Lectures 1-6'''</font></span> |
|- | |- | ||
|- | |- | ||
− | | 9 || T || Feb 19 || | + | | 9 || T || Feb 19 || Sexual selection |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec8_sex%26sexselec.pdf}} '''Sexual Selection Lecture''' | ||
+ | || Ch. 15 | ||
|- | |- | ||
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|- | |- | ||
− | | 10 || Th || Feb 21 || | + | | 10 || Th || Feb 21 || Levels of selection |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec9_levels%26cooperation.pdf}} '''Levels of Selection Lecture''' | ||
+ | || Ch. 16 | ||
|- | |- | ||
|- | |- | ||
− | | 11 || T || Feb 26 || | + | | 11 || T || Feb 26 || Species and species concepts |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec10_species.pdf}} '''Species and Species Concepts Lecture''' | ||
+ | || Ch. 17 & 18 | ||
|- | |- | ||
|- | |- | ||
− | | 12 || Th || Feb 28 || | + | | 12 || Th || Feb 28 || Geographic variation, clines, and allopatric speciation |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec11_speciation1.pdf}} '''Speciation 1 Lecture''' | ||
+ | || Ch. 17 & 18 | ||
|- | |- | ||
|- | |- | ||
− | | || '''''M''''' || '''''Mar 4''''' || '''''Review Session for Exam 2<br> 6-8 PM''''' || '''''BioPhysics Building Rm | + | | || '''''M''''' || '''''Mar 4''''' || '''''Review Session for Exam 2<br> 6-8 PM''''' || '''''BioPhysics Building Rm 130''''' |
|- | |- | ||
|- | |- | ||
− | | 13 || T || Mar 5 || | + | | 13 || T || Mar 5 || Non-allopatric speciation; class evaluations |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB2245_12_lec12_speciation2.pdf}} '''Speciation 2 Lecture''' | ||
+ | || Ch. 18 & 22 | ||
|- | |- | ||
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|- | |- | ||
− | | <span style="font-size: small"><font color="#FF3300">'''14'''</font></span> ||<span style="font-size: small"><font color="#FF3300">'''Th''' </font></span>||<span style="font-size: small"><font color="#FF3300"> '''Mar 7''' </font></span>|| <span style="font-size: small"><font color="#FF3300">'''EXAM #2''' | + | | <span style="font-size: small"><font color="#FF3300">'''14'''</font></span> ||<span style="font-size: small"><font color="#FF3300">'''Th''' </font></span>||<span style="font-size: small"><font color="#FF3300"> '''Mar 7''' </font></span>|| <span style="font-size: small"><font color="#FF3300">'''EXAM #2'''<br>'''You may bring a calculator (NO iphone/smartphone)''' <br> {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Exam2_Studyguide_Henry_2245.pdf}} '''Study Guide for Exam 2'''</font></span><br><span style="font-size: small"><font color="#FF3300">|| <span style="font-size: small"><font color="#FF3300">'''Covers Lectures 7-12'''</font></span> |
|- | |- | ||
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|- | |- | ||
− | | 15 || T || Mar 12 || Systematics: | + | | 15 || T || Mar 12 || Systematics: Tree-thinking, phylogeny, polymorphism, & homoplasy :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB%202245%20%284%20per%20page%29%20Lect.%2015.%20Systematics%20EEB%202245%20S%202013.pdf}}EEB 2245 (4 per page) Lect. 15. Systematics EEB 2245 S 2013.pdf |
+ | || Ch. 2 & 3 | ||
+ | |||
|- | |- | ||
|- | |- | ||
− | | 16 || Th || Mar 14 || Parallelism and reversals; molecular & morphological methods || Ch. 2 & 3 | + | | 16 || Th || Mar 14 || Parallelism and reversals; molecular & morphological methods |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect%2016.%20F13%20Building%20Trees%2013%20Mar%2013.pdf}}Lect 16. S13 Building Trees 13 Mar 13.pdf | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect%2016.%20Handout%20Constructing%20Evolutionary%20Trees%202013.pdf}}Lect 16. Handout Constructing Evolutionary Trees 2013.pdf | ||
+ | || Ch. 2 & 3 | ||
|- | |- | ||
Line 189: | Line 317: | ||
|- | |- | ||
− | | 17 || T || Mar 26 || Reconstructing trees from morphology; how molecules evolve || Ch. 2 & 3 | + | | 17 || T || Mar 26 || Reconstructing trees from morphology; how molecules evolve |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2017%20%20Building%20Trees%20Morph.%20Molec.%20Evolution%2026%20Mar%2013.pdf}}Lect. 17 Building Trees Morph. Molec. Evolution 26 Mar 13.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/EEB%202245%20Systematics%20studyguide.%20Sp%2013.pdf}}EEB 2245 Systematics studyguide. Sp 13.pdf '''Systematics Study Guide for the first three lectures. | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Systematics%20Study%20Guide.%20with%20answers%20Sp%2013.rtf}}Systematics Study Guide. with answers Sp 13.rtf | ||
+ | |||
+ | <br> | ||
+ | || Ch. 2 & 3 | ||
|- | |- | ||
|- | |- | ||
− | | 18 || Th || Mar 28 || Molecular evolution and molecular clocks || Ch. 2 & 3 | + | | 18 || Th || Mar 28 || Molecular evolution and molecular clocks |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2018%20EEB2245%20Molecular%20trees%20molecular%20clocks%2028%20Mar%2013.pdf}}Lect. 18 EEB2245 Molecular trees molecular clocks 28 Mar 13.pdf | ||
+ | |||
+ | || Ch. 2 & 3 | ||
|- | |- | ||
|- | |- | ||
− | | 19 || T || Apr 2 || Overview of the Tree of Life; animal evolutionary innovations || IntroBio textbook | + | | 19 || T || Apr 2 || Overview of the Tree of Life; animal evolutionary innovations |
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2019.%20Overview%20of%20Life%20%26%20Animal%20Phylogenies%202%20Apr%2013%20part%201.pdf}}Lect. 19. Overview of Life & Animal Phylogenies 2 Apr 13 part 1.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2019.%20Overview%20of%20Life%20%26%20Animal%20Phylogenies%202%20Apr%2013%20part%202.pdf}}Lect. 19. Overview of Life & Animal Phylogenies 2 Apr 13 part 2.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%208%20Clocks%2C%20Life%20Sp%2013.docx}}Study Guide 2 Clocks, Life Sp 13.docx | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Eutrochozoa%20vs%20Articulata%20Hypothesis.pdf}}Eutrochozoa vs Articulata Hypothesis.pdf | ||
+ | |||
+ | |||
+ | || IntroBio textbook or lecture notes | ||
|- | |- | ||
|- | |- | ||
− | | 20 || Th || Apr 4 || Evolutionary novelties: | + | | 20 || Th || Apr 4 || Evolutionary novelties: Body plans, constraints, gene regulation |
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect%2020.%20Evolutionary%20Novelties%20S%2013.pdf}}Lect 20. Evolutionary Novelties S 13.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%203.%20Evol.%20Novelties%20Part%201%20Sp%2013.docx}}Study Guide 3. Evol. Novelties Part 1 Sp 13.docx | ||
+ | |||
+ | || Ch. 21 & 22 | ||
|- | |- | ||
|- | |- | ||
− | | | + | | 21 || T || Apr 9 || Homeobox genes, ontogeny & phylogeny, allometry, & fossils |
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2021.%20%20Origin%20of%20Evol.%20Novelties%209%20Apr%2013.pdf}}Lect. 21. Origin of Evol. Novelties 9 Apr 13.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20guide%204.%20Novelties%20Part%202%20Sp%2013.docx}}Study guide 4. Novelties Part 2 Sp 13.docx | ||
+ | |||
+ | || Ch. 4; 21 & 22 | ||
+ | |||
+ | |||
|- | |- | ||
|- | |- | ||
− | | | + | | || '''''T''''' || '''''Apr 9''''' || '''''Review Session for Exam 3 <br>6-8 PM<br> Brigette (L-Z)''''' || '''''BioPhysics Building Rm 131''''' |
|- | |- | ||
|- | |- | ||
− | | || ''''' | + | | || '''''W''''' || '''''Apr 10''''' || '''''Review Session for Exam 3 <br>6-8 PM<br> Geert (A-K)''''' || '''''BioPhysics Building Rm 131''''' |
|- | |- | ||
|- | |- | ||
− | | <span style="font-size: small"><font color="#FF3300">'''22'''</font></span> || <span style="font-size: small"><font color="#FF3300">'''Th'''</font></span> || <span style="font-size: small"><font color="#FF3300">'''Apr 11'''</font></span> || <span style="font-size: small"><font color="#FF3300">'''EXAM #3'''</font></span><span style="font-size: small"><font color="#FF3300"><br | + | | <span style="font-size: small"><font color="#FF3300">'''22'''</font></span> || <span style="font-size: small"><font color="#FF3300">'''Th'''</font></span> || <span style="font-size: small"><font color="#FF3300">'''Apr 11'''</font></span> || <span style="font-size: small"><font color="#FF3300">'''EXAM #3'''</font></span><span style="font-size: small"><font color="#FF3300"><br>|| <span style="font-size: small"><font color="#FF3300">'''Covers Lectures 15-20'''</font></span> |
|- | |- | ||
|- | |- | ||
− | | 23 || T || Apr 16 || The Paleozoic: | + | | 23 || T || Apr 16 || The Paleozoic: Origin of invertebrates, vertebrates, & land plants |
− | + | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2022.%20Overview%20of%20Fossil%20Record%2016%20Apr%2013%20Part%201.pdf}}Lect. 22. Overview of Fossil Record & Paleozoic 16 Apr 13 Part 1.pdf | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2022.%20Overview%20of%20Fossil%20Record%2016%20Apr%2013%20part%202.pdf}}Lect. 22. Paleozoic part 2. 18 Apr 13.pdf | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%205.%20Paleozoic%20Sp%2012.rtf}}Study Guide 5. Overview and Paleozoic Sp 13.rtf | ||
+ | |||
+ | || Ch. 4 & 5; p 168-71 | ||
|- | |- | ||
− | + | ||
|- | |- | ||
+ | | 24 || Th || Apr 18 || Mesozoic I: Pangea, Laurasia, Gondwanaland; reptiles & birds | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2023.%20Mesozoic%20Part%201%2018%20Apr%2013.pdf}}Lect. 23. Mesozoic Part 1 18 Apr 13.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%206.%20Mesozoic%20%20Sp%2013.rtf}}Study Guide 6. Mesozoic Sp 13.rtf | ||
+ | |||
+ | || Ch. 4, 5, & 6 | ||
|- | |- | ||
− | + | ||
|- | |- | ||
+ | | 25 || T || Apr 23 || Mesozoic II: Insects & angiosperms, K-T extinction; Cenozoic I | ||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lecture%2024.%20Part%201.%20Mesozoic%20%28cont.%29%20%2B%20Cenozoic%201st%20half%2023%20Apr%2013.pdf}}Lecture 24. Part 1. Mesozoic (cont.) + Cenozoic 1st half 23 Apr 13.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lecture%2024.%20Part%202.%20Mesozoic%20%28cont.%29%20%2B%20Cenozoic%201st%20half%2023%20Apr%2013.pdf}}Lecture 24. Part 2. Mesozoic (cont.) + Cenozoic 1st half 23 Apr 13.pdf | ||
+ | |||
+ | |||
+ | |||
+ | || Ch. 17 | ||
|- | |- | ||
− | | 26 || Th || Apr 25 || Cenozoic II: | + | |
+ | |- | ||
+ | | 26 || Th || Apr 25 || Cenozoic II: Continental drift & dispersal; primates and humans | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2025.%20Cenozoic%20Part%201.%20%2025%20April%2013.pdf}}Lect. 25. Cenozoic Part 1. 25 April 13.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2025.%20Cenozoic%20Part%202.%2025%20April%2013-2.pdf}}Lect. 25. Cenozoic Part 2. 25 April 13-2.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20Guide%207.%20Cenozoic%20and%20Fossil%20Record%20Summary%20Sp13.doc}}Study Guide 7. Cenozoic and Fossil Record Summary Sp13.doc | ||
+ | |||
+ | || Ch. 17 | ||
|- | |- | ||
|- | |- | ||
− | | | + | | 27 || T || Apr 30 || Human Evolution; Biogeography |
− | |- | + | |
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lecture%2026.%20%20Human%20Evolution.pdf}}Lect. 26. Human Evolution Sp 13.pdf | ||
+ | |||
+ | || Ch. 17 | ||
+ | |- | ||
|- | |- | ||
− | | | + | | 28 || Th || May 2 || Biogeography and Biodiversity; class evaluations |
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Lect.%2027.%20%20Biogeography%202%20May%2013.pdf}}Lect. 27. Biogeography 2 May 13.pdf | ||
+ | |||
+ | :{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evolution/restricted/Study%20guide%208%20Human%20Evolution%20Biodiversity%20Biogeography%20Sp%2013.rtf}}Study guide 8 Human Evolution Biodiversity Biogeography Sp 13.rtf | ||
+ | |||
+ | || Ch. 17 | ||
|- | |- | ||
+ | |- | ||
|- | |- | ||
− | | || '''''T''''' || ''''' | + | | || '''''T''''' || '''''May 7''''' || '''''Review Session for Exam 4 and final <br>6-8 PM<br> Brigette (L-Z)''''' || '''''BioPhysics Building Rm 130''''' |
|- | |- | ||
|- | |- | ||
− | | | + | | || '''''W''''' || '''''May 8''''' || '''''Review Session for Exam 4 and final <br>6-8 PM<br> Geert (A-K)''''' || '''''BioPhysics Building Rm 131''''' |
+ | |- | ||
+ | |- | ||
+ | | ||<span style="font-size: small"><font color="#FF3300">'''Th'''</font></span>||<span style="font-size: small"><font color="#FF3300">'''May 9'''</font></span>||<span style="font-size: small"><font color="#FF3300">'''Exam #4 covers lectures 21-27</font></span> (first hour) & <span style="font-size: small"><font color="#FF3300">FINAL EXAM</font></span> (second hour) cumulative for entire semester''' ||<span style="font-size: small"><font color="#FF3300">'''TLS 154. 8-10 am '''</font></span> | ||
|- | |- | ||
|- |-]} | |- |-]} | ||
<br> | <br> | ||
− |
Latest revision as of 01:23, 21 January 2014
EEB 2245
Evolutionary Biology
Meeting Time: Tuesdays and Thursdays, 9:30-10:45 in TLS154
Textbook: Futuyma, D.J. 2009. Evolution. 2nd ed. Sinauer Associates, Inc. (ISBN 978-0-87893-223-8)
Contents
- 1 Instructors
- 2 Teaching Assistants
- 3 Grading
- 4 Announcements
- 5 Course Resources
- 6 Study guides for Second Half of Course can be found below alongside the lecture notes
- 7 More Course Resources: A sample of current evolution-themed Massive Open Online Courses (check them out!)
- 8 Review Sessions
- 9 Evolution in the News
- 10 Books to read
- 11 Lecture Syllabus
Instructors
First half of the course, 22 January - 7 March
Dr. Charles Henry
Office: TLS 479/481
Phone: 486-4450
E-mail: charles.henry@uconn.edu
Office hours: By arrangement
Second half of the course, 12 March - 2 May
Dr. Chris Simon
Office: BioPharm 305D
Phone: 486-4640
Email: chris.simon@uconn.edu
Office hours: By arrangement
Teaching Assistants
Geert Goemans
Office: BioPharm 323
Phone: 486-3947
Email: geert.goemans@uconn.edu
Students A-K
Office hours: By arrangement
Brigette Zacharczenko
Office: TLS 471
Phone: 486-5503
Email: brigette.zacharczenko@uconn.edu
Students L-Z
Office hours: By arrangement
Grading
EEB 2245: Your grade will be based on your performance in 4 lecture exams and a 1-hour final exam (cumulative). Your lowest score on the 4 lecture exams will be dropped. Your 3 remaining scores and your score on the final exam will each constitute one quarter of your final grade. University regulations require that students who miss the final exam without an excuse from the Dean of Students receive an F for that exam. Thus, you are required to take the final exam.
Note: because you are allowed to drop your lowest score, we will not give make-up exams.
EEB 2245W: Your final grade in the lecture portion of the course will be calculated as above. If you are taking the W version of the course, that grade will constitute 75% of your final course grade. Your grade in the W part of the course, as determined by your “W” instructor, will constitute the remaining 25% of your final course grade, except that an F in the W part of the course will result in an F for the entire course. An F in the lecture part of the course will also result in an F for the entire course. Refer to the 2245W website for further information. Dr. Kristiina Hurme (TLS 379A; tel: 486-5434; kristiina.hurme@uconn.edu) is the coordinator of the W part of the course.
Announcements
31 January 2013: Note that we will continue to post revised hardcopy versions of the course syllabus on the web site, reflecting changes that have already been recorded in the web version of the syllabus (below). The link to it is under "Course Resources," below.
4 February 2013: A study guide for the first lecture exam has been posted. The link to the guide can be found under "Course Resources," below, and within the on-line syllabus. If we modify this study guide between now and February 14th, I will post an announcement here and the new version will automatically replace the old one.
6 February 2013: Under "Course Resources," below, we have posted a few sample exam questions to help you study for the first lecture exam. Because of various changes in the course format, we have no complete lecture exams from previous years to post.
7 February 2013: In preparation for the review sessions coming up on Monday and Tuesday, you can e-mail specific questions to your TA that can then be answered and discussed at the review sessions.
10 February 2013: Cancellation of all UConn classes on Monday, 11 February, means that we also must cancel the Monday review session (see below). Instead, all students interested in attending a review session should show up at the Tuesday review session. Both TAs will be present at that session (Biophysics Building 131).
18 February 2013: Answer keys for Exam 1 (both versions) have been posted below, under "Course Resources." If one thing has emerged from your overall performance on this exam, it is the importance of attending lecture. Simply studying from the lecture slides and book is usually not enough; I add explanatory material when I lecture, and I suggest which points are important and which ones are not. It's a relatively easy, painless way to improve your performance in the exams.
27 February 2013: A study guide for the second lecture exam has been posted. The link to the guide can be found under "Course Resources," below, and within the on-line syllabus. If we modify this study guide between now and March 7th, I will post an announcement here and the new version will automatically replace the old one.
28 February 2013: In preparation for the review sessions coming up on Monday and Tuesday, you can e-mail specific questions to your TA that can then be answered and discussed at the review sessions.
6 March 2013: Brigette has prepared her own study guide for the second lecture exam, which I have posted below under "Course Resources." There are two versions, one with answers and the other without.
12 March 2013: Answer keys for Exam 2 (both versions) have been posted below, under "Course Resources." The first (top) key is to version 1; the second (bottom) key is to version 2.
14 March 2013: Systematics study guide posted (covers first three systematics lectures)
Course Resources
EEB2245 syllabus (printable)
Study Guide for Exam 1 (latest version)
Sample exam questions to help you study for Exam 1.
Key to Exam 1. Version 1 (blue exam) and Version 2 (pink exam) are shown, in that order, followed by answers to the written questions.
Study Guide for Exam 2 (latest version)
Sample exam questions to help you study for Exam 2.
Brigette's Study Guide for Exam 2
Brigette's Study Guide for Exam 2, with answers
Key to Exam 2. Version 1 (yellow exam) and Version 2 (green exam) are shown, in that order, followed by answers to the written questions.
Key to Exam 3. EEB 2245 Versions 1 & 2.PDF
Study guides for Second Half of Course can be found below alongside the lecture notes
More Course Resources: A sample of current evolution-themed Massive Open Online Courses (check them out!)
Stephen Stearns, EEB, Yale, at Academic Earth http://www.academicearth.org/courses/evolution-ecology-and-behavior
and also on Udemy http://www.udemy.com/evolution-ecology-and-behavior-122-with-stephen-c-stearns/
A set of tutorials, more for secondary school http://virtualurchin.stanford.edu/index.html
Introduction to Genetics and Evolution with Mohamed Noor by Duke on Coursera https://www.coursera.org/course/geneticsevolution
This Michigan State University MOOC focuses on Foundations of Science, but also includes components on evolution and creationism http://foundations-of-science.zoology.msu.edu/
Stanford Human Behavioral Biology http://www.youtube.com/watch?v=NNnIGh9g6fA&feature=results_video&playnext=1&list=PL848F2368C90DDC3D
Khan Academy has material on Hardy-Weinberg principle https://www.khanacademy.org/
Review Sessions
Updated 29 January 2013 -- There will be two review sessions for the first exam on Thursday, February 14th. They will be:
** CANCELLED ** Monday, February 11th, 6-8PM in BioPhysics Building Rm 130 (students L-Z, Brigette Z.), and
Tuesday, Feburary 12th, 6-8PM in BioPhysics Building Rm 131 (NOW OPEN TO ALL STUDENTS).
Review sessions are structured to answer any questions you might have encountered while studying or going over the example exam. Please come to the review session with specific questions -- or, you can e-mail questions to your TA ahead of time. If you can not attend either review session but have questions pertaining to the course material prior to the exam please contact your assigned TA to set up a time to meet.
Updated 28 February 2013 -- There will be two review sessions for the second exam on Thursday, March 7th. They will be:
Monday, March 4th, 6-8PM in BioPhysics Building Rm 130 (students L-Z, Brigette Z., primary), and
Tuesday, March 5th, 6-8PM in BioPhysics Building Rm 131 (students A-K, Geert G., primary).
Evolution in the News
5 February 2013, New York Times online: Darwin and pigeon breeding
19 February 2013, New York Time online: East Asian Physical Traits Linked to 35,000-Year-Old Mutation
20 February 2013, Nature online Superstars of Botany: Rare Specimens
20 February 2013, Imgur.com Nothing is stranger than reality -- This entertaining sequence of panels about courtship and mating in an angler fish is actually very accurate. It's good to bear in mind that sexual selection does not always produce large, powerful males!
12 March 2013, New York Times online: Solving the puzzles of mimicry in nature
11 April 2013, YouTube: Convergent evolution of crushing jaws in hyenas and dogs
22 April 2013, Nature online: The African coelacanth genome provides insights into tetrapod evolution
2 May 2013, New York Times online: Emergence of Brood II Cicadas: Here comes the buzz
Books to read
Your Inner Fish: A journey into the 3.5 billion year history of the human body
By Neil Shubin (who found Tiktaalik!)
Buy it here
The Voyage of the Beagle
By Charles Darwin
Buy it here
Lecture Syllabus
Please read assigned chapters, as indicated below, prior to class