http://hydrodictyon.eeb.uconn.edu/eebedia/api.php?action=feedcontributions&user=Jeffrey+Divino&feedformat=atomEEBedia - User contributions [en]2024-03-28T08:21:05ZUser contributionsMediaWiki 1.25.2http://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Seminar_speaker_sign-up&diff=35534Seminar speaker sign-up2016-03-22T16:30:07Z<p>Jeffrey Divino: </p>
<hr />
<div><span style="font-size: larger"> '''Linda Deegan'''<br><br />
'''Institution:''' Woods Hole Marine Biological Laboratory<br><br />
'''Website:''' http://www.mbl.edu/ecosystems/faculty/deegan/<br><br />
'''Seminar Title:''' ''Ecosystem evolution and sustainability of nutrient enriched coastal saltmarshes'' <br><br />
'''Time and Place:''' 4:00 PM, Thursday, 24 March 2016, in BPB 131<br><br />
'''Contact:''' Mark Urban<br><br />
<br />
<br />
==Thursday, March 24, 2016 ==<br />
{|border=1 cellpadding=8<br />
| '''Time''' || '''Name''' || '''Room'''<br />
|-<br />
| 8:00 am ||Margaret Rubega || Breakfast at Tolland Inn and transport to campus <br />
|-<br />
| 9:30 || Chris Field || PharmBio 223<br />
|-<br />
|10:00 || Morgan Tingley || PharmBio 205D <br />
|-<br />
|10:30 || Eric Schultz || PharmBio 205B<br />
|-<br />
|11:00 || Heidi Golden committee meeting || 2nd floor fishbowl<br />
|-<br />
|12:00 || Lunch with grad students || Bamford Conference Room <br />
|-<br />
|1:00 || Chris Elphick || TLS 372/4<br />
|-<br />
|1:30 || ||<br />
|-<br />
|2:00 || Jeffrey Divino || PharmBio 210<br />
|-<br />
|2:30 || Robert Bagchi || PharmBio 205C <br />
|-<br />
|3:00 || EEB 3894 undergrad Seminar, Dustin Ray and Cera Fisher || TLS 181 <br />
|-<br />
|3:30 || Pre-seminar snacks || TLS171B (Bamford room)<br />
|-<br />
|4:00 || SEMINAR || BPB 131<br />
|-<br />
|-<br />
|Dinner 6 p.m. || Mark Urban, Heidi Golden, Chris Elphick ... || Cafemantic<br />
|}<br />
<br />
==Friday, March 11, 2016 ==<br />
{|border=1 cellpadding=8<br />
|-<br />
| '''Time''' || '''Name''' || '''Room'''<br />
|-<br />
|8:30 Breakfast || Mark Urban || Tolland Inn<br />
|-<br />
|9:30 || Leave for MBL || <br />
|}</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=2015_Biological_Photo_Contest&diff=332282015 Biological Photo Contest2015-02-17T22:32:51Z<p>Jeffrey Divino: </p>
<hr />
<div>This page showcases the entries to the 2015 Biological Photo Contest. Voting will commence in the week preceding the [[Graduate_Student_Symposium_2015|Grad Symposium]] with winners announced at the end of the Symposium. <br />
To enter, send your full resolution photo and caption to [mailto:kaitlin.gallagher@uconn.edu kaitlin.gallagher@uconn.edu] and it will be put on this page.<br />
<br />
{| border="0"<br />
|-<br />
|[[File:Simon Cicada.jpg|left|600px|Photo by Chris Simon]]<br />
| valign="top" | This singing Amphipsalta cingulata male "clapping cicada" from Miramar, Wellington, NZ, is probably only days old because the tiny silvery setae covering his body are still very much in tact and reflecting the sunlight. Note the long straw-like sucking beak, spotted compound eyes, and “nose” (cibarial pump) like the grill of a 1940 Oldsmobile. '''- Chris Simon '''<br />
|-<br />
|[[File:Brigette_Photo_Contest_2015.jpg|left|600px|Photo by Brigette Zacharczenko]]<br />
| valign="top" | Two opiliones engaged in a passionate embrace (they're doing it). '''- Brigette Zackarczenko '''<br />
|-<br />
|[[File:Divino_Photo_Contest_2015.jpg|left|600px|Photo by Jeffrey Divino]]<br />
| valign="top" | '''A day in the life of a two-headed stickleback.'''<br />
Bill: "Hey, Marty, you hungry?"<br />
<br />
Marty: "Starving, Bill. We're growing sticklebacks, aren't we?"<br />
<br />
B: "I think I saw some brine shrimp over there in the left corner of the tank."<br />
<br />
M: "Uh...Your left or mine?"<br />
<br />
B: "Geesh, Marty - I dunno, just look with each of your eyes. You tell me!"<br />
<br />
M: "Ok, ok...no need to get all cranky. Somebody's got a case of the Mondays. Alright I see them."<br />
<br />
B: "Good, so on the count of three, you stroke once with your fin, then me, then you, then me."<br />
<br />
M: "Fine but could you lay off the tail flipping this time? We don't want to scare them off...again!"<br />
<br />
B: "Would you just forget about it, already? Why do you always blame me every time we strike out?"<br />
<br />
M: "Look - I'm just saying to not get too excited on the chase, like you always do."<br />
<br />
B: "Well, fine! If you think you can hunt all by yourself, then go right ahead. You do all the swimming; I'll just watch."<br />
<br />
M: "Dammit, Bill - don't start this pity party again! Can we just get something to eat, please?" <br />
<br />
'''- Jeffrey Divino '''<br />
|-<br />
<br />
<h2 style="margin:0;background-color:#cedff2;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding:0.2em 0.4em;">Animals</h2><br />
<br />
{| border="0"<br />
|-<br />
|[[File:Nora_Photo_Contest_2015.jpg|left|600px|Photo by Nora Mitchell]]<br />
| valign="top" | To go along with our Connecticut state flower (Kalmia latifolia), a verse from the Connecticut state song:<br />
"Yankee Doodle went to town,<br />
<br />
Riding on a pony,<br />
<br />
Stuck a feather in his hat,<br />
<br />
And called it macaroni." <br />
<br />
'''- Nora Mitchell '''<br />
|-<br />
<br />
<h2 style="margin:0;background-color:#cedff2;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding:0.2em 0.4em;">Plants</h2><br />
<br />
{| border="0"<br />
|-<br />
|[[File:Hannah_Gousse_Photo_Contest_2015.jpg|left|600px|Photo by Hannah Gousse]]<br />
| valign="top" | Its a photo of Saguaro cactuses taken somewhere on the road between Flagstaff and Phoenix AZ. '''- Hannah Gousse '''<br />
|-<br />
<br />
<h2 style="margin:0;background-color:#cedff2;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding:0.2em 0.4em;">Environment</h2><br />
<br />
{| border="0"<br />
|-<br />
<br />
[[Category:Graduate Research Symposium]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=2015_Biological_Photo_Contest&diff=332272015 Biological Photo Contest2015-02-17T22:31:45Z<p>Jeffrey Divino: </p>
<hr />
<div>This page showcases the entries to the 2015 Biological Photo Contest. Voting will commence in the week preceding the [[Graduate_Student_Symposium_2015|Grad Symposium]] with winners announced at the end of the Symposium. <br />
To enter, send your full resolution photo and caption to [mailto:kaitlin.gallagher@uconn.edu kaitlin.gallagher@uconn.edu] and it will be put on this page.<br />
<br />
{| border="0"<br />
|-<br />
|[[File:Simon Cicada.jpg|left|600px|Photo by Chris Simon]]<br />
| valign="top" | This singing Amphipsalta cingulata male "clapping cicada" from Miramar, Wellington, NZ, is probably only days old because the tiny silvery setae covering his body are still very much in tact and reflecting the sunlight. Note the long straw-like sucking beak, spotted compound eyes, and “nose” (cibarial pump) like the grill of a 1940 Oldsmobile. '''- Chris Simon '''<br />
|-<br />
|[[File:Brigette_Photo_Contest_2015.jpg|left|600px|Photo by Brigette Zacharczenko]]<br />
| valign="top" | Two opiliones engaged in a passionate embrace (they're doing it). '''- Brigette Zackarczenko '''<br />
|-<br />
|[[File:Divino_Photo_Contest_2015.jpg|left|600px|Photo by Jeffrey Divino]]<br />
| valign="top" | A day in the life of a two-headed stickleback.<br />
Bill: "Hey, Marty, you hungry?"<br />
<br />
Marty: "Starving, Bill. We're growing sticklebacks, aren't we?"<br />
<br />
B: "I think I saw some brine shrimp over there in the left corner of the tank."<br />
<br />
M: "Uh...Your left or mine?"<br />
<br />
B: "Geesh, Marty - I dunno, just look with each of your eyes. You tell me!"<br />
<br />
M: "Ok, ok...no need to get all cranky. Somebody's got a case of the Mondays. Alright I see them."<br />
<br />
B: "Good, so on the count of three, you stroke once with your fin, then me, then you, then me."<br />
<br />
M: "Fine but could you lay off the tail flipping this time? We don't want to scare them off...again!"<br />
<br />
B: "Would you just forget about it, already? Why do you always blame me every time we strike out?"<br />
<br />
M: "Look - I'm just saying to not get too excited on the chase, like you always do."<br />
<br />
B: "Well, fine! If you think you can hunt all by yourself, then go right ahead. You do all the swimming; I'll just watch."<br />
<br />
M: "Dammit, Bill - don't start this pity party again! Can we just get something to eat, please?" <br />
<br />
'''- Jeffrey Divino '''<br />
|-<br />
<br />
<h2 style="margin:0;background-color:#cedff2;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding:0.2em 0.4em;">Animals</h2><br />
<br />
{| border="0"<br />
|-<br />
|[[File:Nora_Photo_Contest_2015.jpg|left|600px|Photo by Nora Mitchell]]<br />
| valign="top" | To go along with our Connecticut state flower (Kalmia latifolia), a verse from the Connecticut state song:<br />
"Yankee Doodle went to town,<br />
<br />
Riding on a pony,<br />
<br />
Stuck a feather in his hat,<br />
<br />
And called it macaroni." <br />
<br />
'''- Nora Mitchell '''<br />
|-<br />
<br />
<h2 style="margin:0;background-color:#cedff2;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding:0.2em 0.4em;">Plants</h2><br />
<br />
{| border="0"<br />
|-<br />
|[[File:Hannah_Gousse_Photo_Contest_2015.jpg|left|600px|Photo by Hannah Gousse]]<br />
| valign="top" | Its a photo of Saguaro cactuses taken somewhere on the road between Flagstaff and Phoenix AZ. '''- Hannah Gousse '''<br />
|-<br />
<br />
<h2 style="margin:0;background-color:#cedff2;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding:0.2em 0.4em;">Environment</h2><br />
<br />
{| border="0"<br />
|-<br />
<br />
[[Category:Graduate Research Symposium]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Graduate_Student_Symposium_2015&diff=33194Graduate Student Symposium 20152015-02-16T20:36:07Z<p>Jeffrey Divino: </p>
<hr />
<div><center> <big>''' <br />
== Saturday, March 7, 2015 == <br />
==== Biology/Physics Building Room 130, 9:00am to ~ 4:00pm ====<br />
'''</big> </center> <br><br />
<br><br />
The '''EEB Graduate Student Symposium''' is an all day event where graduate students present their research to other graduate students and faculty. Any EEB graduate student can present: BS/MS, masters, PhD, old and new students. New graduate students usually present research ideas or preliminary data, while those more ‘seasoned’ students present their most recent results, often in preparation for upcoming spring and summer meetings. <br />
<br><br />
<br><br />
[[Image:EEB forweb smaller.png|400px|center|]]<br />
__NOEDITSECTION__<br />
<br />
==Schedule==<br />
{| border="1" cellpadding="2" <br />
!style="background:#efefef;" width="80" align="center"|Time<br />
!style="background:#efefef;" width="175"|Speaker<br />
!style="background:#efefef;" width="500"|Title<br />
|- <br />
!style="background:#efefef;"| 8:30-9:00 || || Coffee and potluck breakfast.<br />
|- <br />
| 9:00-9:15 || Dr. Mun Choi: Provost and Executive Vice President for Academic Affairs || Welcome Address <br />
|- <br />
| 9:15-9:30 || Nora Mitchell || Trait-microclimate relationships in a <i>Protea</i> hybrid zone<br />
|- <br />
| 9:30-9:45 || Alyssa Borowske || Something about sparrows... <br />
|- <br />
| 9:45-10:00 || Andrew Frank || TBA <br />
|- <br />
| 10:00-10:15 || Jimmy Bernot || Tapeworms in Mustelus spp. in the Atlantic, from 1819 to 2015<br />
|- <br />
| 10:15-10:30 || Chris Nadeau || TBA<br />
|- <br />
!style="background:#efefef;"| 10:30-11:00 || || '''Morning Break'''<br />
|- <br />
| 11:00-11:15 ||Jan-Michael Hessenauer, NRE|| <br />
|- <br />
| 11:15-11:30 || Chris Field || TBA<br />
|- <br />
| 11:30-11:45 || Simona Augyte || Kelping in the northeast; from wave swept shores to sustainable aquaculture<br />
|- <br />
| 11:45-12:00 || Hamid Razifard || Phylogeny of Waterworts (<i>Elatine</i> L.): An Evolutionary Reversal <br />
|- <br />
!style="background:#efefef;"| 12:00-1:30 || || '''Lunch'''<br />
|- <br />
| 1:30-2:00 || Dr. Chris Martine, Bucknell University || Keynote Address<br />
|- <br />
| 2:00-2:15 || Johana Goyes-Vallejos ||TBA <br />
|- <br />
| 2:15-2:30 || Lauren Stanley || Regulation of carotenoid biosynthesis in <i>Mimulus <br />
|- <br />
| 2:30-2:45 || Wen Chen || something about European Fire Ant<br />
|- <br />
| 2:45-3:00 || Andrew Beard, Geosciences || δ13Corg records in Late Devonian (Frasnian-Famennian) strata of the Appalachian Basin<br />
|- <br />
!style="background:#efefef;"| 3:00-3:10 || || '''Afternoon Break'''<br />
|- <br />
| 3:10-3:25 || Hayley Kilroy M. || Leaf Reflectance Spectra as (a) Functional Trait(s)<br />
|- <br />
| 3:25-3:40 ||Anna Sjodin || TBA<br />
|- <br />
!style="background:#efefef;" | 3:40-4:00 || || '''Speed Talks and Photo Contest'''<br />
|- <br />
| 3:40-3:45 ||Brigette Zacharczenko || a witty title about courtship structures, coming soon<br />
|- <br />
| 3:45-3:50 || Jeffrey Divino || Salinity tolerance in sticklebacks: a matter of survival<br />
|- <br />
| 3:50-3:55 || || <br />
|- <br />
| 3:55-4:00 || Photo Contest Results ||[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/2015_Biological_Photo_Contest Photo Submissions]<br />
|- <br />
|}<br />
<br><br />
[[Image:EEB forweb smaller.png|400px|center|]]<br />
<br />
__NOEDITSECTION__<br />
<br />
==Abstracts==<br />
<br><br />
<br />
<br />
<br />
<br />
<br />
<br/><br/><br />
<br />
----<br />
<br />
<br />
<br />
[[Category:Graduate Research Symposium]]<br />
[[Category:Graduate Student Resources]]<br />
__NOTOC__</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Graduate_Student_Symposium_2015&diff=33193Graduate Student Symposium 20152015-02-16T20:20:19Z<p>Jeffrey Divino: </p>
<hr />
<div><center> <big>''' <br />
== Saturday, March 7, 2015 == <br />
==== Biology/Physics Building Room 130, 9:00am to ~ 4:00pm ====<br />
'''</big> </center> <br><br />
<br><br />
The '''EEB Graduate Student Symposium''' is an all day event where graduate students present their research to other graduate students and faculty. Any EEB graduate student can present: BS/MS, masters, PhD, old and new students. New graduate students usually present research ideas or preliminary data, while those more ‘seasoned’ students present their most recent results, often in preparation for upcoming spring and summer meetings. <br />
<br><br />
<br><br />
[[Image:EEB forweb smaller.png|400px|center|]]<br />
__NOEDITSECTION__<br />
<br />
==Schedule==<br />
{| border="1" cellpadding="2" <br />
!style="background:#efefef;" width="80" align="center"|Time<br />
!style="background:#efefef;" width="175"|Speaker<br />
!style="background:#efefef;" width="500"|Title<br />
|- <br />
!style="background:#efefef;"| 8:30-9:00 || || Coffee and potluck breakfast.<br />
|- <br />
| 9:00-9:15 || Dr. Mun Choi: Provost and Executive Vice President for Academic Affairs || Welcome Address <br />
|- <br />
| 9:15-9:30 || Nora Mitchell || Trait-microclimate relationships in a <i>Protea</i> hybrid zone<br />
|- <br />
| 9:30-9:45 || Alyssa Borowske || Something about sparrows... <br />
|- <br />
| 9:45-10:00 || Andrew Frank || TBA <br />
|- <br />
| 10:00-10:15 || Jimmy Bernot || Tapeworms in Mustelus spp. in the Atlantic, from 1819 to 2015<br />
|- <br />
| 10:15-10:30 || Chris Nadeau || TBA<br />
|- <br />
!style="background:#efefef;"| 10:30-11:00 || || '''Morning Break'''<br />
|- <br />
| 11:00-11:15 ||Jan-Michael Hessenauer, NRE|| <br />
|- <br />
| 11:15-11:30 || Chris Field || TBA<br />
|- <br />
| 11:30-11:45 || Simona Augyte || Kelping in the northeast; from wave swept shores to sustainable aquaculture<br />
|- <br />
| 11:45-12:00 || Hamid Razifard || Phylogeny of Waterworts (<i>Elatine</i> L.): An Evolutionary Reversal <br />
|- <br />
!style="background:#efefef;"| 12:00-1:30 || || '''Lunch'''<br />
|- <br />
| 1:30-2:00 || Dr. Chris Martine, Bucknell University || Keynote Address<br />
|- <br />
| 2:00-2:15 || Johana Goyes-Vallejos ||TBA <br />
|- <br />
| 2:15-2:30 || Lauren Stanley || Regulation of carotenoid biosynthesis in <i>Mimulus <br />
|- <br />
| 2:30-2:45 || Wen Chen || something about European Fire Ant<br />
|- <br />
| 2:45-3:00 || Andrew Beard, Geosciences || δ13Corg records in Late Devonian (Frasnian-Famennian) strata of the Appalachian Basin<br />
|- <br />
!style="background:#efefef;"| 3:00-3:10 || || '''Afternoon Break'''<br />
|- <br />
| 3:10-3:25 || Hayley Kilroy M. || Leaf Reflectance Spectra as (a) Functional Trait(s)<br />
|- <br />
| 3:25-3:40 ||Anna Sjodin || TBA<br />
|- <br />
!style="background:#efefef;" | 3:40-4:00 || || '''Speed Talks and Photo Contest'''<br />
|- <br />
| 3:40-3:45 ||Brigette Zacharczenko || a witty title about courtship structures, coming soon<br />
|- <br />
| 3:45-3:50 || Jeffrey Divino || <br />
|- <br />
| 3:50-3:55 || || <br />
|- <br />
| 3:55-4:00 || Photo Contest Results ||[http://hydrodictyon.eeb.uconn.edu/eebedia/index.php/2015_Biological_Photo_Contest Photo Submissions]<br />
|- <br />
|}<br />
<br><br />
[[Image:EEB forweb smaller.png|400px|center|]]<br />
<br />
__NOEDITSECTION__<br />
<br />
==Abstracts==<br />
<br><br />
<br />
<br />
<br />
<br />
<br />
<br/><br/><br />
<br />
----<br />
<br />
<br />
<br />
[[Category:Graduate Research Symposium]]<br />
[[Category:Graduate Student Resources]]<br />
__NOTOC__</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Seminar_speaker_sign-up&diff=31455Seminar speaker sign-up2014-10-15T16:05:14Z<p>Jeffrey Divino: </p>
<hr />
<div><span style="font-size: larger">Rebecca Fuller<br><br />
'''Institution:''' University of Illinois at Urbana-Champaign <br><br />
'''Website:''' http://www.life.illinois.edu/fuller/Fuller_Lab/Welcome.html <br><br />
'''Seminar Title:''' ''Speciation, adaptation to salinity, and chromosomal rearrangements in killifish''<br><br />
'''Time and Place:''' 4:00 PM Thursday, 16 October 2014, in BPB 130<br><br />
'''Contact:''' Eric Schultz (eric.schultz@uconn.edu) <br><br />
<br />
==Wednesday, 15 October 2014 ==<br />
<br />
Arriving 1315 on US Airways 8393 from ORD. Pickup by Velotta or Schultz.<br />
<br />
Reservation at the Tolland Inn.<br />
<br />
{|border=1 cellpadding=8<br />
|-<br />
| '''Time''' || '''Name''' || '''Room'''<br />
|-<br />
|3:00 p.m. || Rachel O'Neill || Beach Hall<br />
|-<br />
|3:30 p.m. || Nate Jue || Beach Hall 335 <br />
|-<br />
|4:00 p.m. || Nate Jue || Beach Hall 335<br />
|-<br />
|4:30 p.m. || Carl Schlichting || TLS 366<br />
|-<br />
|5:30 p.m. || || <br />
|-<br />
|6:00 p.m. || Jon Velotta, Eric Schultz, Jessie Rack, +? || Dinner<br />
|}<br />
<br><br />
<br />
==Thursday, 16 October 2014 ==<br />
{|border=1 cellpadding=8<br />
|-<br />
| '''Time''' || '''Name''' || '''Room'''<br />
|-<br />
|8:00 a.m. || Yaowu Yuan || Breakfast, Tolland Inn<br />
|-<br />
|9:30 a.m. || Schlichting/Holsinger grads|| TLS 363<br />
|-<br />
|10:00 a.m. || || <br />
|-<br />
|10:30 a.m. || Cera Fisher || Pharmacy 318 <br />
|-<br />
|11:00 a.m. || Kentwood Wells || TLS 382<br />
|-<br />
|11:30 a.m. || Kurt Schwenk || TLS 360<br />
|-<br />
|12:15 p.m. || Grad Lunch || TLS, Bamford Conference Room, TLS 171B<br />
|-<br />
|1:30 p.m. || Charlie Henry || TLS 479/481<br />
|-<br />
|2:00 p.m. || || <br />
|-<br />
|2:30 p.m. || || <br />
|-<br />
|3:00 p.m. || Jeffrey Divino || Pharm-Bio 210 <br />
|-<br />
|3:30 p.m. || Seminar prep || Biology-Physics Building (BPB) 130<br />
|-<br />
|4:00 p.m. || Speciation, adaptation to salinity, and chromosomal rearrangements in killifish || BPB 130 <br />
|-<br />
|6:00 p.m. || Jon Velotta, Eric Schultz, Jeff Divino +?? || Dinner<br />
|}<br />
<br></div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Evo_Devo_Fall2013&diff=27442Evo Devo Fall20132013-12-01T22:42:36Z<p>Jeffrey Divino: </p>
<hr />
<div><span style="font-size: x-large">EEB 5333, Fall 2013</span><br><br />
<span style="font-size: large">''Evolutionary Developmental Biology''</span><br><br />
<span style="font-size: small">'''Meeting Time: Tuesdays and Thursdays, 2:00-3:15 pm, Bamford Room (TLS 171B)'''<br><br />
<br />
==Description==<br />
This is an advanced course that explores the interface between evolutionary biology and developmental biology. In addition to considering how developmental pathways evolve, and the developmental basis of phenotypic evolution, we will ask what novel insights emerge from a synthesis of these fields. Major topics to be considered include the following: developmental constraints, homology, plasticity, novelty and evolvability. <br> <br><br />
<br />
==Instructors==<br />
<br />
'''[mailto:elizabeth.jockusch@uconn.edu Dr. Elizabeth Jockusch]'''<br><br />
Office: Biology/Pharmacy 305B<br><br />
Phone: (860) 486-4452<br><br />
Office hours: by appointment<br><br><br />
<br />
'''[mailto:schlicht@uconn.edu Dr. Carl Schlichting]'''<br><br />
Office: Torrey Life Sciences 366<br><br />
Phone: (860) 486-4056<br><br />
Office hours: by appointment<br><br />
<br />
<br />
==Announcements and Handouts==<br />
It's time to begin the conversations about project topics. We'd like everyone to have a topic approved by Sept. 20. You can initiate conversations with us by email or in person. Cera, Nora, Ellen, Wei: your primary contact is Carl. Dister, Nasim, Jeff, Tim: your primary contact is Elizabeth.<br><br />
<br><br />
<br />
<b>Discussion leaders</b>: Please email a pdf with discussion questions to both Elizabeth and Carl. In the ideal world, this would happen no later than Tuesday night of the week you will present. we will post it on the website.<br><br />
<br><br />
<br />
[http://hydrodictyon.eeb.uconn.edu/eebedia/images/0/0f/Evodevo_Sources.pdf Books & Sources in Evolutionary Developmental Biology]<br><br />
<br />
<br><br />
<br />
==Expectations and Grading== <br />
This course has a mixed lecture/discussion format. In general, Tuesdays will be used for lectures that provide an overview and background information. Thursdays will be dedicated to student-led discussion based on reading from the literature. We expect everyone to participate actively in the class. In order to help prepare for discussions, you should write a brief (<1 page) reaction piece to each set of readings, highlighting your thoughts about the readings, connections between them or questions raised by them. This will be handed in each week. Responsibility for leading the discussions will rotate. <br />
You are expected to complete an independent project on a topic of your choice. Ideally, your topic will be closely connected to your own research interests, and also integrate multiple topics covered in class . You should discuss your choice of topics with one of us no later than Friday, Sept. 20. To help you stay on track, an outline and relevant references are due on Tuesday, Oct. 8. The final project paper is due by Monday Nov. 25, and the last week of class will be devoted to presentations and discussions based on these projects.<br />
There will be one take-home exam due the day of the Final Exam. It will consist of one or several essay questions that will ask you to integrate the knowledge that you have acquired during the course. <br />
<br />
<br><br />
<br />
===Deadlines===<br />
<table><br />
<tr><br />
<td>Weekly</td><td>Discussion pieces</td><br />
</tr><br />
<tr><br />
<td>Friday, Sept. 20</td><td>Project topic approved</td><br />
</tr><br />
<tr><br />
<td>Tuesday, Oct. 8</td><td>Project outline and references due</td><br />
</tr><br />
<tr><br />
<td>Monday, Nov. 25</td><td>Project paper due</td><br />
</tr><br />
<tr><br />
<td>Dec. 3-5</td><td>Project presentations</td><br />
</tr><br />
<tr><br />
<td>Tuesday, Dec. 10</td><td>Final exam due</td><br />
</tr><br />
</table><br />
<br><br />
<br />
===Course grade===<br />
<table><br />
<tr><br />
<td>Discussions</td><td>35%, including participation, leading discussion, and reaction pieces</td><br />
</tr><br />
<tr><br />
<td>Independent project</td><td>40%, based on presentation (15%) and paper (25%)</td><br />
</tr><br />
<tr><br />
<td>Final exam</td><td>25%</td><br />
</tr><br />
</table><br />
<br><br />
<br />
==Topics and Readings==<br />
<br />
<br />
===Week 1 (Aug. 27/29): Overview of evolutionary developmental biology (EJ)===<br />
Discussion Leader: Elizabeth<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Moczek AP. 2012. The nature of nurture and the future of evodevo: toward a theory of developmental evolution. Int. Comp. Biol. 52:108-119. [http://ezproxy.lib.uconn.edu/login?url=http://icb.oxfordjournals.org/content/52/1/108.long link]</li><br />
<li>Wray GA. 2010. Embryos and evolution: 150 years of reciprocal illumination. Pp. 215-239 In Bell MA, Futuyma DJ, Eanes WF, Levinton JS, Evolution since Darwin: The First 150 Years. Sinauer Associates, Sunderland MA. [EJ will provide copies]</li><br />
If time permits (I know there's not much this week!), I'd also encourage you to read this:<br />
<li>Müller GB. 2007. Evo-devo: extending the evolutionary synthesis. Nat Rev Genet. 8(12):943-9. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nrg/journal/v8/n12/full/nrg2219.html link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion1Questions.pdf}} <br><br />
<br />
===Week 2 (Sept. 3/5): Morphological and molecular patterns (EJ)===<br />
Discussion Leader: Jeff<br><br />
Discussion Readings: The developmental hourglass and the phylotypic stage<br><br />
<ul><br />
<li>Quint M, Drost HG, Gabel A, Ullrich KK, Bönn M, Grosse I. 2012. A transcriptomic hourglass in plant embryogenesis. Nature 490(7418):98-101.[http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v490/n7418/full/nature11394.html link]</li><br />
<li>Irie N, Kuratani S. 2011. Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis.<br />
Nat Commun. 2:248. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/ncomms/journal/v2/n3/full/ncomms1248.html link]</li><br />
<li>Xiangjun Tian, Joan E. Strassmann and David C. Queller. 2013. Dictyostelium Development Shows a Novel Pattern of Evolutionary Conservation. Mol. Biol. Evol. 30:977-984. [http://ezproxy.lib.uconn.edu/login?url=http://mbe.oxfordjournals.org/content/30/4/977.full link]</li> <br />
[http://embryo.asu.edu/pages/slime-mold-development-video-john-tyler-bonner Slime molds in action!]<br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion2Questions.pdf}} <br><br />
<br />
===Week 3 (Sept. 10/12): The molecular building blocks of development (CS)===<br />
Discussion Leader: Cera<br><br />
Discussion Readings:<br><br />
<li>Hoekstra, H. E. and J. A. Coyne. 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995-1016. [http://onlinelibrary.wiley.com/doi/10.1111/j.1558-5646.2007.00105.x/abstract;jsessionid=A6CE2F975795DC863F781C3AEF0AC936.d04t01 link]<br />
<li>Carroll, S. B. 2008. EvoDevo and an Expanding Evolutionary Synthesis: a genetic theory of morphological evolution. Cell 134:25-36.<br />
[https://vpn.uconn.edu/science/article/pii/,DanaInfo=www.sciencedirect.com+S0092867408008179 link]<br />
<li>Wessinger, C. A. and M. D. Rausher. 2012. Lessons from flower colour evolution on targets of selection. Journal of Experimental Botany 63:5741-5749.<br />
[https://vpn.uconn.edu/content/63/16/,DanaInfo=jxb.oxfordjournals.org+5741.full.pdf+html link]<br />
<br> <br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion3Questions.pdf}} <br><br />
<br><br />
===Week 4 (Sept. 17/19): Evolution of developmental networks (CS)===<br />
<font color="#FF3300"><b>Reminder:</b></font> Talk to Carl or Elizabeth about your proposed project this week!<br><br />
Discussion Leader: Carl<br><br />
Discussion Readings:<br>Lowe, C. B., M. Kellis, et al. 2011. Three periods of regulatory innovation during vertebrate evolution. Science 333: 1019-1024.<br />
10.1126/science.1202702<br />
<br />
Chae, L., I. Lee, et al. 2012. Towards understanding how molecular networks evolve in plants. Current Opinion in Plant Biology 15: 177-184.<br />
10.1016/j.pbi.2012.01.006<br />
<br />
<br />
Discussion Questions:<br><br />
<br />
===Week 5 (Sept. 24/26): Homology (CS)===<br />
Discussion Leader: Nora<br><br />
Discussion Readings:<br><br />
Gillis, J. A., M. S. Modrell, et al. 2013. Developmental evidence for serial homology of the vertebrate jaw and gill arch skeleton. Nature Communications 4. <br />
10.1038/ncomms2429<br />
<br><br />
Sharma, V., B. N. Tripathi, et al. 2012. Organ-wise homologies of stipule, leaf and inflorescence between Pisum sativum genetic variants, Delonix regia and Caesalpinia bonduc indicate parallel evolution of morphogenetic regulation. Plant Systematics and Evolution 298: 1167-1175. <br />
10.1007/s00606-012-0612-x<br />
<br />
Discussion Questions:<br><br />
<br />
===Week 6 (Oct. 1/3): Homoplasy (CS)===<br />
Discussion Leader: Carl<br><br />
Background reading for Tuesday: <br><br />
Arendt, J. and D. Reznick. 2008. Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends in Ecology & Evolution 23: 26-32. 10.1016/j.tree.2007.09.011<br />
<br><br><br />
Discussion Readings:<br><br />
Zhang, R., C. C. Guo, et al. 2013. Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae). Proceedings of the National Academy of Sciences of the United States of America 110: 5074-5079. 10.1073/pnas.1219690110<br />
<br><br>Muschick, M., A. Indermaur, et al. 2012. Convergent evolution within an adaptive radiation of cichlid fishes. Current Biology 22: 2362-2368. 10.1016/j.cub.2012.10.048<br />
<br><br><br />
Discussion Questions:<br><br />
<br />
===Week 7 (Oct. 8/10): Constraints (EJ)===<br />
<font color="#FF3300"><b>Reminder:</b></font> Project outlines and references due on Tuesday!<br><br />
Discussion Leader: Dister<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Chitwood DH, Headland LR, Ranjan A, Martinez CC, Braybrook SA, Koenig DP, Kuhlemeier C, Smith RS, Sinha NR. 2012. Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning. Plant Cell 24(6):2318-27. [http://ezproxy.lib.uconn.edu/login?url=http://www.plantcell.org/content/24/6/2318.long link]</li><br />
<li><br />
de Bakker MA, Fowler DA, den Oude K, Dondorp EM, Navas MC, Horbanczuk JO, Sire JY, Szczerbińska D, Richardson MK. 2013. Digit loss in archosaur evolution and the interplay between selection and constraints. Nature 500(7463):445-8. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v500/n7463/full/nature12336.html link]</li><br />
<li>Salazar-Ciudad I, Marín-Riera M. 2013. Adaptive dynamics under development-based genotype-phenotype maps. Nature 497:361-4. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v497/n7449/full/nature12142.html link]</li><br />
Highly recommended: read the [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v497/n7449/full/nature12099.html News and Views] first!<br />
</ul><br />
<br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion7Questions.pdf}}<br><br />
<br />
===Week 8 (Oct. 15/17): Novelty (EJ)===<br />
Discussion Leader: Nasim<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Rebeiz M, Jikomes N, Kassner VA, Carroll SB. 2011. Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences. Proc Natl Acad Sci 108(25):10036-43. [http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/108/25/10036.full link]</li><br />
<li>Sharma B, Kramer E. 2013. Sub- and neo-functionalization of APETALA3 paralogs have contributed to the evolution of novel floral organ identity in Aquilegia (columbine, Ranunculaceae). New Phytol. 197(3):949-57. [http://ezproxy.lib.uconn.edu/login?url=http://onlinelibrary.wiley.com/doi/10.1111/nph.12078/full link]</li><br />
<li>Oliver JC, Tong XL, Gall LF, Piel WH, Monteiro A. 2012. A single origin for nymphalid butterfly eyespots followed by widespread loss of associated gene expression. PLoS Genet. 8(8):e1002893. [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002893 link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion8Questions.pdf}} <br><br />
===Week 9 (Oct. 22/24): Morphospace (CS)===<br />
Discussion Leader: class<br><br />
Discussion Readings:<br><br />
<ul><br />
<li> Bennett & Goswami. 2013. Statistical support for the hypothesis of developmental constraint in marsupial skull evolution. BMC Biology 11: 52.</li><br />
<li>Arbour & Lopez-Fernandez. 2013. Ecological variation in South American geophagine cichlids arose during an early burst of adaptive morphological and functional evolution. Proceedings of the Royal Society B-Biological Sciences 280: 20130849.</li><br />
<li>Roelants et al. 2011. Anuran radiations and the evolution of tadpole morphospace. Proceedings of the National Academy of Sciences USA 108: 8731-8736. 10.1073/pnas.1100633108</li><br />
</ul><br />
<br />
Discussion Questions:<br><br />
<br />
===Week 10 (Oct. 29/31): Modularity (EJ)===<br />
Discussion Leader: Wei<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Mallarino, R., P. R. Grant, et al. 2011. Two developmental modules establish 3D beak-shape variation in Darwin's finches. Proceedings of the National Academy of Sciences USA 108:4057-4062.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/108/10/4057 link]</li><br />
<li>Parsons KJ, Márquez E, Albertson RC. 2012. Constraint and opportunity: the genetic basis and evolution of modularity in the cichlid mandible. Am Nat. 179(1):64-78.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.jstor.org/stable/10.1086/663200 link]</li><br />
<li>Clune J, Mouret JB, Lipson H. 2013. The evolutionary origins of modularity. Proc Biol Sci. B 280(1755):20122863. <br />
[http://ezproxy.lib.uconn.edu/login?url=http://rspb.royalsocietypublishing.org/content/280/1755/20122863.long link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion10Questions.pdf}} <br><br />
<br />
===Week 11 (Nov. 5/7): Robustness and plasticity (CS)===<br />
Discussion Leader: Tim<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Scoville, A. G. and M. Pfrender. 2010. Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators. Proceedings of the National Academy of Sciences of the United States of America 107: 4260-4263. 10.1073/pnas.0912748107.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/107/9/4260.full link]</li><br />
<li>Gunter HM, Fan S, Xiong F, Franchini P, Fruciano C, Meyer A. 2013. Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Mol Ecol. 22(17):4516-31.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://onlinelibrary.wiley.com/doi/10.1111/mec.12417/full link] </li><br />
<li>Sgrò CM, Wegener B, Hoffmann AA. 2010. A naturally occurring variant of Hsp90 that is associated with decanalization. Proc Biol Sci. 77(1690):2049-57.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://rspb.royalsocietypublishing.org/content/277/1690/2049.long link]</li><br />
</ul><br />
Discussion Questions:<br><br />
<br />
===Week 12 (Nov. 12/14): Evolvability (EJ)===<br />
Discussion Leader: Ellen<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Woods RJ, Barrick JE, Cooper TF, Shrestha U, Kauth MR, Lenski RE. 2011. Second-order selection for evolvability in a large Escherichia coli population. Science 331(6023):1433-6. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencemag.org/content/331/6023/1433.long link]</li><br />
<li>Garfield DA, Runcie DE, Babbitt CC, Haygood R, Nielsen WJ, Wray GA. 2013. The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network. PLoS Biol 11(10): e1001696. [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001696 link]</li><br />
<li>Rabosky DL, Santini F, Eastman J, Smith SA, Sidlauskas B, Chang J, Alfaro ME. 2013. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation. Nat Commun. 4:1958. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/ncomms/2013/130606/ncomms2958/full/ncomms2958.html link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion12Questions.pdf}} <br><br />
<br />
===Week 13 (Nov. 19/21): Case studies (EJ) and heterochrony (CS)===<br />
Discussion Leader: Class--email a question to Elizabeth<br><br />
Discussion Readings: Let'st just focus on the future, instead of case studies. So forget about Arnoult et al. (with apologies to those of you who have already read it).<br><br />
<ul><br />
<li>Irschick DJ, Albertson RC, Brennan P, Podos J, Johnson NA, Patek S, Dumont E. 2013. Evo-devo beyond morphology: from genes to resource use. Trends Ecol Evol. 28(5):267-73. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S0169534712003151 link]</li><br />
<li>Parsons KJ, Albertson RC. 2013. Unifying and generalizing the two strands of evo-devo. Trends Ecol Evol. 28(10):584-91. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S0169534713001675 link]</li><br />
</ul><br />
Optional Reading for those interested in micro-evo-devo:<br />
<ul><br />
<li>Nunes MD, Arif S, Schlötterer C, McGregor AP. 2013. A perspective on micro-evo-devo: progress and potential. Genetics 195(3):625-34. [http://ezproxy.lib.uconn.edu/login?url=http://www.genetics.org/content/195/3/625.long link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion13Questions.pdf}} <br><br />
<font color="#FF3300"><b>Reminder:</b></font> Project papers are due on Monday, Nov. 25!<br><br><br />
<br />
===Week 14 (Nov. 26/28): Happy Thanksgiving!===<br />
<br />
===Week 15 (Dec. 3/5): Project Presentations ===<br />
[[Category:EEB Courses]]<br />
<br />
Here's the presentation order. Of course, any swap that is mutually agreeable to you is fine with us. Talks should be 15 min., with 5 min. for questions. Please add your title and suggest a background reading. (Dister and Wei: email that information and we'll add it for you).<br><br><br />
<b>Tuesday, December 3</b><br />
<ul><br />
<li>Cera: How does development evolve under selection for signaling morphology? [http://www.biomedcentral.com.ezproxy.lib.uconn.edu/1471-2148/13/158 suggested reading]</li><br />
<li>Ellen</li><br />
<li>Wei</li><br />
<li>Jeff: Diadromy: why & how. Suggested reading: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Gross88_Productivity%26Diadromy.pdf}}Productivity & Diadromy</li><br />
</ul><br />
<br />
<b>Thursday, December 5</b><br />
<ul><br />
<li>Nora: Identifying plant functional trait novelty via transgressive segregation [http://link.springer.com/article/10.1007/s11692-012-9209-0/fulltext.html link]</li><br />
<li>Nasim</li><br />
<li>Dister: Arbuscular Mycorrhizal: Symbiosis and the Development of Embryophytes [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S1369526606001786 link]</li><br />
<li>Tim</li><br />
</ul></div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Evo_Devo_Fall2013&diff=27441Evo Devo Fall20132013-12-01T22:35:04Z<p>Jeffrey Divino: </p>
<hr />
<div><span style="font-size: x-large">EEB 5333, Fall 2013</span><br><br />
<span style="font-size: large">''Evolutionary Developmental Biology''</span><br><br />
<span style="font-size: small">'''Meeting Time: Tuesdays and Thursdays, 2:00-3:15 pm, Bamford Room (TLS 171B)'''<br><br />
<br />
==Description==<br />
This is an advanced course that explores the interface between evolutionary biology and developmental biology. In addition to considering how developmental pathways evolve, and the developmental basis of phenotypic evolution, we will ask what novel insights emerge from a synthesis of these fields. Major topics to be considered include the following: developmental constraints, homology, plasticity, novelty and evolvability. <br> <br><br />
<br />
==Instructors==<br />
<br />
'''[mailto:elizabeth.jockusch@uconn.edu Dr. Elizabeth Jockusch]'''<br><br />
Office: Biology/Pharmacy 305B<br><br />
Phone: (860) 486-4452<br><br />
Office hours: by appointment<br><br><br />
<br />
'''[mailto:schlicht@uconn.edu Dr. Carl Schlichting]'''<br><br />
Office: Torrey Life Sciences 366<br><br />
Phone: (860) 486-4056<br><br />
Office hours: by appointment<br><br />
<br />
<br />
==Announcements and Handouts==<br />
It's time to begin the conversations about project topics. We'd like everyone to have a topic approved by Sept. 20. You can initiate conversations with us by email or in person. Cera, Nora, Ellen, Wei: your primary contact is Carl. Dister, Nasim, Jeff, Tim: your primary contact is Elizabeth.<br><br />
<br><br />
<br />
<b>Discussion leaders</b>: Please email a pdf with discussion questions to both Elizabeth and Carl. In the ideal world, this would happen no later than Tuesday night of the week you will present. we will post it on the website.<br><br />
<br><br />
<br />
[http://hydrodictyon.eeb.uconn.edu/eebedia/images/0/0f/Evodevo_Sources.pdf Books & Sources in Evolutionary Developmental Biology]<br><br />
<br />
<br><br />
<br />
==Expectations and Grading== <br />
This course has a mixed lecture/discussion format. In general, Tuesdays will be used for lectures that provide an overview and background information. Thursdays will be dedicated to student-led discussion based on reading from the literature. We expect everyone to participate actively in the class. In order to help prepare for discussions, you should write a brief (<1 page) reaction piece to each set of readings, highlighting your thoughts about the readings, connections between them or questions raised by them. This will be handed in each week. Responsibility for leading the discussions will rotate. <br />
You are expected to complete an independent project on a topic of your choice. Ideally, your topic will be closely connected to your own research interests, and also integrate multiple topics covered in class . You should discuss your choice of topics with one of us no later than Friday, Sept. 20. To help you stay on track, an outline and relevant references are due on Tuesday, Oct. 8. The final project paper is due by Monday Nov. 25, and the last week of class will be devoted to presentations and discussions based on these projects.<br />
There will be one take-home exam due the day of the Final Exam. It will consist of one or several essay questions that will ask you to integrate the knowledge that you have acquired during the course. <br />
<br />
<br><br />
<br />
===Deadlines===<br />
<table><br />
<tr><br />
<td>Weekly</td><td>Discussion pieces</td><br />
</tr><br />
<tr><br />
<td>Friday, Sept. 20</td><td>Project topic approved</td><br />
</tr><br />
<tr><br />
<td>Tuesday, Oct. 8</td><td>Project outline and references due</td><br />
</tr><br />
<tr><br />
<td>Monday, Nov. 25</td><td>Project paper due</td><br />
</tr><br />
<tr><br />
<td>Dec. 3-5</td><td>Project presentations</td><br />
</tr><br />
<tr><br />
<td>Tuesday, Dec. 10</td><td>Final exam due</td><br />
</tr><br />
</table><br />
<br><br />
<br />
===Course grade===<br />
<table><br />
<tr><br />
<td>Discussions</td><td>35%, including participation, leading discussion, and reaction pieces</td><br />
</tr><br />
<tr><br />
<td>Independent project</td><td>40%, based on presentation (15%) and paper (25%)</td><br />
</tr><br />
<tr><br />
<td>Final exam</td><td>25%</td><br />
</tr><br />
</table><br />
<br><br />
<br />
==Topics and Readings==<br />
<br />
<br />
===Week 1 (Aug. 27/29): Overview of evolutionary developmental biology (EJ)===<br />
Discussion Leader: Elizabeth<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Moczek AP. 2012. The nature of nurture and the future of evodevo: toward a theory of developmental evolution. Int. Comp. Biol. 52:108-119. [http://ezproxy.lib.uconn.edu/login?url=http://icb.oxfordjournals.org/content/52/1/108.long link]</li><br />
<li>Wray GA. 2010. Embryos and evolution: 150 years of reciprocal illumination. Pp. 215-239 In Bell MA, Futuyma DJ, Eanes WF, Levinton JS, Evolution since Darwin: The First 150 Years. Sinauer Associates, Sunderland MA. [EJ will provide copies]</li><br />
If time permits (I know there's not much this week!), I'd also encourage you to read this:<br />
<li>Müller GB. 2007. Evo-devo: extending the evolutionary synthesis. Nat Rev Genet. 8(12):943-9. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nrg/journal/v8/n12/full/nrg2219.html link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion1Questions.pdf}} <br><br />
<br />
===Week 2 (Sept. 3/5): Morphological and molecular patterns (EJ)===<br />
Discussion Leader: Jeff<br><br />
Discussion Readings: The developmental hourglass and the phylotypic stage<br><br />
<ul><br />
<li>Quint M, Drost HG, Gabel A, Ullrich KK, Bönn M, Grosse I. 2012. A transcriptomic hourglass in plant embryogenesis. Nature 490(7418):98-101.[http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v490/n7418/full/nature11394.html link]</li><br />
<li>Irie N, Kuratani S. 2011. Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis.<br />
Nat Commun. 2:248. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/ncomms/journal/v2/n3/full/ncomms1248.html link]</li><br />
<li>Xiangjun Tian, Joan E. Strassmann and David C. Queller. 2013. Dictyostelium Development Shows a Novel Pattern of Evolutionary Conservation. Mol. Biol. Evol. 30:977-984. [http://ezproxy.lib.uconn.edu/login?url=http://mbe.oxfordjournals.org/content/30/4/977.full link]</li> <br />
[http://embryo.asu.edu/pages/slime-mold-development-video-john-tyler-bonner Slime molds in action!]<br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion2Questions.pdf}} <br><br />
<br />
===Week 3 (Sept. 10/12): The molecular building blocks of development (CS)===<br />
Discussion Leader: Cera<br><br />
Discussion Readings:<br><br />
<li>Hoekstra, H. E. and J. A. Coyne. 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995-1016. [http://onlinelibrary.wiley.com/doi/10.1111/j.1558-5646.2007.00105.x/abstract;jsessionid=A6CE2F975795DC863F781C3AEF0AC936.d04t01 link]<br />
<li>Carroll, S. B. 2008. EvoDevo and an Expanding Evolutionary Synthesis: a genetic theory of morphological evolution. Cell 134:25-36.<br />
[https://vpn.uconn.edu/science/article/pii/,DanaInfo=www.sciencedirect.com+S0092867408008179 link]<br />
<li>Wessinger, C. A. and M. D. Rausher. 2012. Lessons from flower colour evolution on targets of selection. Journal of Experimental Botany 63:5741-5749.<br />
[https://vpn.uconn.edu/content/63/16/,DanaInfo=jxb.oxfordjournals.org+5741.full.pdf+html link]<br />
<br> <br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion3Questions.pdf}} <br><br />
<br><br />
===Week 4 (Sept. 17/19): Evolution of developmental networks (CS)===<br />
<font color="#FF3300"><b>Reminder:</b></font> Talk to Carl or Elizabeth about your proposed project this week!<br><br />
Discussion Leader: Carl<br><br />
Discussion Readings:<br>Lowe, C. B., M. Kellis, et al. 2011. Three periods of regulatory innovation during vertebrate evolution. Science 333: 1019-1024.<br />
10.1126/science.1202702<br />
<br />
Chae, L., I. Lee, et al. 2012. Towards understanding how molecular networks evolve in plants. Current Opinion in Plant Biology 15: 177-184.<br />
10.1016/j.pbi.2012.01.006<br />
<br />
<br />
Discussion Questions:<br><br />
<br />
===Week 5 (Sept. 24/26): Homology (CS)===<br />
Discussion Leader: Nora<br><br />
Discussion Readings:<br><br />
Gillis, J. A., M. S. Modrell, et al. 2013. Developmental evidence for serial homology of the vertebrate jaw and gill arch skeleton. Nature Communications 4. <br />
10.1038/ncomms2429<br />
<br><br />
Sharma, V., B. N. Tripathi, et al. 2012. Organ-wise homologies of stipule, leaf and inflorescence between Pisum sativum genetic variants, Delonix regia and Caesalpinia bonduc indicate parallel evolution of morphogenetic regulation. Plant Systematics and Evolution 298: 1167-1175. <br />
10.1007/s00606-012-0612-x<br />
<br />
Discussion Questions:<br><br />
<br />
===Week 6 (Oct. 1/3): Homoplasy (CS)===<br />
Discussion Leader: Carl<br><br />
Background reading for Tuesday: <br><br />
Arendt, J. and D. Reznick. 2008. Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends in Ecology & Evolution 23: 26-32. 10.1016/j.tree.2007.09.011<br />
<br><br><br />
Discussion Readings:<br><br />
Zhang, R., C. C. Guo, et al. 2013. Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae). Proceedings of the National Academy of Sciences of the United States of America 110: 5074-5079. 10.1073/pnas.1219690110<br />
<br><br>Muschick, M., A. Indermaur, et al. 2012. Convergent evolution within an adaptive radiation of cichlid fishes. Current Biology 22: 2362-2368. 10.1016/j.cub.2012.10.048<br />
<br><br><br />
Discussion Questions:<br><br />
<br />
===Week 7 (Oct. 8/10): Constraints (EJ)===<br />
<font color="#FF3300"><b>Reminder:</b></font> Project outlines and references due on Tuesday!<br><br />
Discussion Leader: Dister<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Chitwood DH, Headland LR, Ranjan A, Martinez CC, Braybrook SA, Koenig DP, Kuhlemeier C, Smith RS, Sinha NR. 2012. Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning. Plant Cell 24(6):2318-27. [http://ezproxy.lib.uconn.edu/login?url=http://www.plantcell.org/content/24/6/2318.long link]</li><br />
<li><br />
de Bakker MA, Fowler DA, den Oude K, Dondorp EM, Navas MC, Horbanczuk JO, Sire JY, Szczerbińska D, Richardson MK. 2013. Digit loss in archosaur evolution and the interplay between selection and constraints. Nature 500(7463):445-8. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v500/n7463/full/nature12336.html link]</li><br />
<li>Salazar-Ciudad I, Marín-Riera M. 2013. Adaptive dynamics under development-based genotype-phenotype maps. Nature 497:361-4. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v497/n7449/full/nature12142.html link]</li><br />
Highly recommended: read the [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v497/n7449/full/nature12099.html News and Views] first!<br />
</ul><br />
<br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion7Questions.pdf}}<br><br />
<br />
===Week 8 (Oct. 15/17): Novelty (EJ)===<br />
Discussion Leader: Nasim<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Rebeiz M, Jikomes N, Kassner VA, Carroll SB. 2011. Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences. Proc Natl Acad Sci 108(25):10036-43. [http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/108/25/10036.full link]</li><br />
<li>Sharma B, Kramer E. 2013. Sub- and neo-functionalization of APETALA3 paralogs have contributed to the evolution of novel floral organ identity in Aquilegia (columbine, Ranunculaceae). New Phytol. 197(3):949-57. [http://ezproxy.lib.uconn.edu/login?url=http://onlinelibrary.wiley.com/doi/10.1111/nph.12078/full link]</li><br />
<li>Oliver JC, Tong XL, Gall LF, Piel WH, Monteiro A. 2012. A single origin for nymphalid butterfly eyespots followed by widespread loss of associated gene expression. PLoS Genet. 8(8):e1002893. [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002893 link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion8Questions.pdf}} <br><br />
===Week 9 (Oct. 22/24): Morphospace (CS)===<br />
Discussion Leader: class<br><br />
Discussion Readings:<br><br />
<ul><br />
<li> Bennett & Goswami. 2013. Statistical support for the hypothesis of developmental constraint in marsupial skull evolution. BMC Biology 11: 52.</li><br />
<li>Arbour & Lopez-Fernandez. 2013. Ecological variation in South American geophagine cichlids arose during an early burst of adaptive morphological and functional evolution. Proceedings of the Royal Society B-Biological Sciences 280: 20130849.</li><br />
<li>Roelants et al. 2011. Anuran radiations and the evolution of tadpole morphospace. Proceedings of the National Academy of Sciences USA 108: 8731-8736. 10.1073/pnas.1100633108</li><br />
</ul><br />
<br />
Discussion Questions:<br><br />
<br />
===Week 10 (Oct. 29/31): Modularity (EJ)===<br />
Discussion Leader: Wei<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Mallarino, R., P. R. Grant, et al. 2011. Two developmental modules establish 3D beak-shape variation in Darwin's finches. Proceedings of the National Academy of Sciences USA 108:4057-4062.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/108/10/4057 link]</li><br />
<li>Parsons KJ, Márquez E, Albertson RC. 2012. Constraint and opportunity: the genetic basis and evolution of modularity in the cichlid mandible. Am Nat. 179(1):64-78.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.jstor.org/stable/10.1086/663200 link]</li><br />
<li>Clune J, Mouret JB, Lipson H. 2013. The evolutionary origins of modularity. Proc Biol Sci. B 280(1755):20122863. <br />
[http://ezproxy.lib.uconn.edu/login?url=http://rspb.royalsocietypublishing.org/content/280/1755/20122863.long link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion10Questions.pdf}} <br><br />
<br />
===Week 11 (Nov. 5/7): Robustness and plasticity (CS)===<br />
Discussion Leader: Tim<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Scoville, A. G. and M. Pfrender. 2010. Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators. Proceedings of the National Academy of Sciences of the United States of America 107: 4260-4263. 10.1073/pnas.0912748107.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/107/9/4260.full link]</li><br />
<li>Gunter HM, Fan S, Xiong F, Franchini P, Fruciano C, Meyer A. 2013. Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Mol Ecol. 22(17):4516-31.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://onlinelibrary.wiley.com/doi/10.1111/mec.12417/full link] </li><br />
<li>Sgrò CM, Wegener B, Hoffmann AA. 2010. A naturally occurring variant of Hsp90 that is associated with decanalization. Proc Biol Sci. 77(1690):2049-57.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://rspb.royalsocietypublishing.org/content/277/1690/2049.long link]</li><br />
</ul><br />
Discussion Questions:<br><br />
<br />
===Week 12 (Nov. 12/14): Evolvability (EJ)===<br />
Discussion Leader: Ellen<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Woods RJ, Barrick JE, Cooper TF, Shrestha U, Kauth MR, Lenski RE. 2011. Second-order selection for evolvability in a large Escherichia coli population. Science 331(6023):1433-6. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencemag.org/content/331/6023/1433.long link]</li><br />
<li>Garfield DA, Runcie DE, Babbitt CC, Haygood R, Nielsen WJ, Wray GA. 2013. The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network. PLoS Biol 11(10): e1001696. [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001696 link]</li><br />
<li>Rabosky DL, Santini F, Eastman J, Smith SA, Sidlauskas B, Chang J, Alfaro ME. 2013. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation. Nat Commun. 4:1958. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/ncomms/2013/130606/ncomms2958/full/ncomms2958.html link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion12Questions.pdf}} <br><br />
<br />
===Week 13 (Nov. 19/21): Case studies (EJ) and heterochrony (CS)===<br />
Discussion Leader: Class--email a question to Elizabeth<br><br />
Discussion Readings: Let'st just focus on the future, instead of case studies. So forget about Arnoult et al. (with apologies to those of you who have already read it).<br><br />
<ul><br />
<li>Irschick DJ, Albertson RC, Brennan P, Podos J, Johnson NA, Patek S, Dumont E. 2013. Evo-devo beyond morphology: from genes to resource use. Trends Ecol Evol. 28(5):267-73. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S0169534712003151 link]</li><br />
<li>Parsons KJ, Albertson RC. 2013. Unifying and generalizing the two strands of evo-devo. Trends Ecol Evol. 28(10):584-91. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S0169534713001675 link]</li><br />
</ul><br />
Optional Reading for those interested in micro-evo-devo:<br />
<ul><br />
<li>Nunes MD, Arif S, Schlötterer C, McGregor AP. 2013. A perspective on micro-evo-devo: progress and potential. Genetics 195(3):625-34. [http://ezproxy.lib.uconn.edu/login?url=http://www.genetics.org/content/195/3/625.long link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion13Questions.pdf}} <br><br />
<font color="#FF3300"><b>Reminder:</b></font> Project papers are due on Monday, Nov. 25!<br><br><br />
<br />
===Week 14 (Nov. 26/28): Happy Thanksgiving!===<br />
<br />
===Week 15 (Dec. 3/5): Project Presentations ===<br />
[[Category:EEB Courses]]<br />
<br />
Here's the presentation order. Of course, any swap that is mutually agreeable to you is fine with us. Talks should be 15 min., with 5 min. for questions. Please add your title and suggest a background reading. (Dister and Wei: email that information and we'll add it for you).<br><br><br />
<b>Tuesday, December 3</b><br />
<ul><br />
<li>Cera: How does development evolve under selection for signaling morphology? [http://www.biomedcentral.com.ezproxy.lib.uconn.edu/1471-2148/13/158 suggested reading]</li><br />
<li>Ellen</li><br />
<li>Wei</li><br />
<li>Jeff: Diadromy: why & how. Suggested reading: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Gross88_Productivity%26Diadromy.pdf}}Gross88_Productivity&Diadromy.pdf</li><br />
</ul><br />
<br />
<b>Thursday, December 5</b><br />
<ul><br />
<li>Nora: Identifying plant functional trait novelty via transgressive segregation [http://link.springer.com/article/10.1007/s11692-012-9209-0/fulltext.html link]</li><br />
<li>Nasim</li><br />
<li>Dister: Arbuscular Mycorrhizal: Symbiosis and the Development of Embryophytes [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S1369526606001786 link]</li><br />
<li>Tim</li><br />
</ul></div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Evo_Devo_Fall2013&diff=27440Evo Devo Fall20132013-12-01T22:27:46Z<p>Jeffrey Divino: </p>
<hr />
<div><span style="font-size: x-large">EEB 5333, Fall 2013</span><br><br />
<span style="font-size: large">''Evolutionary Developmental Biology''</span><br><br />
<span style="font-size: small">'''Meeting Time: Tuesdays and Thursdays, 2:00-3:15 pm, Bamford Room (TLS 171B)'''<br><br />
<br />
==Description==<br />
This is an advanced course that explores the interface between evolutionary biology and developmental biology. In addition to considering how developmental pathways evolve, and the developmental basis of phenotypic evolution, we will ask what novel insights emerge from a synthesis of these fields. Major topics to be considered include the following: developmental constraints, homology, plasticity, novelty and evolvability. <br> <br><br />
<br />
==Instructors==<br />
<br />
'''[mailto:elizabeth.jockusch@uconn.edu Dr. Elizabeth Jockusch]'''<br><br />
Office: Biology/Pharmacy 305B<br><br />
Phone: (860) 486-4452<br><br />
Office hours: by appointment<br><br><br />
<br />
'''[mailto:schlicht@uconn.edu Dr. Carl Schlichting]'''<br><br />
Office: Torrey Life Sciences 366<br><br />
Phone: (860) 486-4056<br><br />
Office hours: by appointment<br><br />
<br />
<br />
==Announcements and Handouts==<br />
It's time to begin the conversations about project topics. We'd like everyone to have a topic approved by Sept. 20. You can initiate conversations with us by email or in person. Cera, Nora, Ellen, Wei: your primary contact is Carl. Dister, Nasim, Jeff, Tim: your primary contact is Elizabeth.<br><br />
<br><br />
<br />
<b>Discussion leaders</b>: Please email a pdf with discussion questions to both Elizabeth and Carl. In the ideal world, this would happen no later than Tuesday night of the week you will present. we will post it on the website.<br><br />
<br><br />
<br />
[http://hydrodictyon.eeb.uconn.edu/eebedia/images/0/0f/Evodevo_Sources.pdf Books & Sources in Evolutionary Developmental Biology]<br><br />
<br />
<br><br />
<br />
==Expectations and Grading== <br />
This course has a mixed lecture/discussion format. In general, Tuesdays will be used for lectures that provide an overview and background information. Thursdays will be dedicated to student-led discussion based on reading from the literature. We expect everyone to participate actively in the class. In order to help prepare for discussions, you should write a brief (<1 page) reaction piece to each set of readings, highlighting your thoughts about the readings, connections between them or questions raised by them. This will be handed in each week. Responsibility for leading the discussions will rotate. <br />
You are expected to complete an independent project on a topic of your choice. Ideally, your topic will be closely connected to your own research interests, and also integrate multiple topics covered in class . You should discuss your choice of topics with one of us no later than Friday, Sept. 20. To help you stay on track, an outline and relevant references are due on Tuesday, Oct. 8. The final project paper is due by Monday Nov. 25, and the last week of class will be devoted to presentations and discussions based on these projects.<br />
There will be one take-home exam due the day of the Final Exam. It will consist of one or several essay questions that will ask you to integrate the knowledge that you have acquired during the course. <br />
<br />
<br><br />
<br />
===Deadlines===<br />
<table><br />
<tr><br />
<td>Weekly</td><td>Discussion pieces</td><br />
</tr><br />
<tr><br />
<td>Friday, Sept. 20</td><td>Project topic approved</td><br />
</tr><br />
<tr><br />
<td>Tuesday, Oct. 8</td><td>Project outline and references due</td><br />
</tr><br />
<tr><br />
<td>Monday, Nov. 25</td><td>Project paper due</td><br />
</tr><br />
<tr><br />
<td>Dec. 3-5</td><td>Project presentations</td><br />
</tr><br />
<tr><br />
<td>Tuesday, Dec. 10</td><td>Final exam due</td><br />
</tr><br />
</table><br />
<br><br />
<br />
===Course grade===<br />
<table><br />
<tr><br />
<td>Discussions</td><td>35%, including participation, leading discussion, and reaction pieces</td><br />
</tr><br />
<tr><br />
<td>Independent project</td><td>40%, based on presentation (15%) and paper (25%)</td><br />
</tr><br />
<tr><br />
<td>Final exam</td><td>25%</td><br />
</tr><br />
</table><br />
<br><br />
<br />
==Topics and Readings==<br />
<br />
<br />
===Week 1 (Aug. 27/29): Overview of evolutionary developmental biology (EJ)===<br />
Discussion Leader: Elizabeth<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Moczek AP. 2012. The nature of nurture and the future of evodevo: toward a theory of developmental evolution. Int. Comp. Biol. 52:108-119. [http://ezproxy.lib.uconn.edu/login?url=http://icb.oxfordjournals.org/content/52/1/108.long link]</li><br />
<li>Wray GA. 2010. Embryos and evolution: 150 years of reciprocal illumination. Pp. 215-239 In Bell MA, Futuyma DJ, Eanes WF, Levinton JS, Evolution since Darwin: The First 150 Years. Sinauer Associates, Sunderland MA. [EJ will provide copies]</li><br />
If time permits (I know there's not much this week!), I'd also encourage you to read this:<br />
<li>Müller GB. 2007. Evo-devo: extending the evolutionary synthesis. Nat Rev Genet. 8(12):943-9. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nrg/journal/v8/n12/full/nrg2219.html link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion1Questions.pdf}} <br><br />
<br />
===Week 2 (Sept. 3/5): Morphological and molecular patterns (EJ)===<br />
Discussion Leader: Jeff<br><br />
Discussion Readings: The developmental hourglass and the phylotypic stage<br><br />
<ul><br />
<li>Quint M, Drost HG, Gabel A, Ullrich KK, Bönn M, Grosse I. 2012. A transcriptomic hourglass in plant embryogenesis. Nature 490(7418):98-101.[http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v490/n7418/full/nature11394.html link]</li><br />
<li>Irie N, Kuratani S. 2011. Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis.<br />
Nat Commun. 2:248. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/ncomms/journal/v2/n3/full/ncomms1248.html link]</li><br />
<li>Xiangjun Tian, Joan E. Strassmann and David C. Queller. 2013. Dictyostelium Development Shows a Novel Pattern of Evolutionary Conservation. Mol. Biol. Evol. 30:977-984. [http://ezproxy.lib.uconn.edu/login?url=http://mbe.oxfordjournals.org/content/30/4/977.full link]</li> <br />
[http://embryo.asu.edu/pages/slime-mold-development-video-john-tyler-bonner Slime molds in action!]<br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion2Questions.pdf}} <br><br />
<br />
===Week 3 (Sept. 10/12): The molecular building blocks of development (CS)===<br />
Discussion Leader: Cera<br><br />
Discussion Readings:<br><br />
<li>Hoekstra, H. E. and J. A. Coyne. 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995-1016. [http://onlinelibrary.wiley.com/doi/10.1111/j.1558-5646.2007.00105.x/abstract;jsessionid=A6CE2F975795DC863F781C3AEF0AC936.d04t01 link]<br />
<li>Carroll, S. B. 2008. EvoDevo and an Expanding Evolutionary Synthesis: a genetic theory of morphological evolution. Cell 134:25-36.<br />
[https://vpn.uconn.edu/science/article/pii/,DanaInfo=www.sciencedirect.com+S0092867408008179 link]<br />
<li>Wessinger, C. A. and M. D. Rausher. 2012. Lessons from flower colour evolution on targets of selection. Journal of Experimental Botany 63:5741-5749.<br />
[https://vpn.uconn.edu/content/63/16/,DanaInfo=jxb.oxfordjournals.org+5741.full.pdf+html link]<br />
<br> <br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion3Questions.pdf}} <br><br />
<br><br />
===Week 4 (Sept. 17/19): Evolution of developmental networks (CS)===<br />
<font color="#FF3300"><b>Reminder:</b></font> Talk to Carl or Elizabeth about your proposed project this week!<br><br />
Discussion Leader: Carl<br><br />
Discussion Readings:<br>Lowe, C. B., M. Kellis, et al. 2011. Three periods of regulatory innovation during vertebrate evolution. Science 333: 1019-1024.<br />
10.1126/science.1202702<br />
<br />
Chae, L., I. Lee, et al. 2012. Towards understanding how molecular networks evolve in plants. Current Opinion in Plant Biology 15: 177-184.<br />
10.1016/j.pbi.2012.01.006<br />
<br />
<br />
Discussion Questions:<br><br />
<br />
===Week 5 (Sept. 24/26): Homology (CS)===<br />
Discussion Leader: Nora<br><br />
Discussion Readings:<br><br />
Gillis, J. A., M. S. Modrell, et al. 2013. Developmental evidence for serial homology of the vertebrate jaw and gill arch skeleton. Nature Communications 4. <br />
10.1038/ncomms2429<br />
<br><br />
Sharma, V., B. N. Tripathi, et al. 2012. Organ-wise homologies of stipule, leaf and inflorescence between Pisum sativum genetic variants, Delonix regia and Caesalpinia bonduc indicate parallel evolution of morphogenetic regulation. Plant Systematics and Evolution 298: 1167-1175. <br />
10.1007/s00606-012-0612-x<br />
<br />
Discussion Questions:<br><br />
<br />
===Week 6 (Oct. 1/3): Homoplasy (CS)===<br />
Discussion Leader: Carl<br><br />
Background reading for Tuesday: <br><br />
Arendt, J. and D. Reznick. 2008. Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends in Ecology & Evolution 23: 26-32. 10.1016/j.tree.2007.09.011<br />
<br><br><br />
Discussion Readings:<br><br />
Zhang, R., C. C. Guo, et al. 2013. Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae). Proceedings of the National Academy of Sciences of the United States of America 110: 5074-5079. 10.1073/pnas.1219690110<br />
<br><br>Muschick, M., A. Indermaur, et al. 2012. Convergent evolution within an adaptive radiation of cichlid fishes. Current Biology 22: 2362-2368. 10.1016/j.cub.2012.10.048<br />
<br><br><br />
Discussion Questions:<br><br />
<br />
===Week 7 (Oct. 8/10): Constraints (EJ)===<br />
<font color="#FF3300"><b>Reminder:</b></font> Project outlines and references due on Tuesday!<br><br />
Discussion Leader: Dister<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Chitwood DH, Headland LR, Ranjan A, Martinez CC, Braybrook SA, Koenig DP, Kuhlemeier C, Smith RS, Sinha NR. 2012. Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning. Plant Cell 24(6):2318-27. [http://ezproxy.lib.uconn.edu/login?url=http://www.plantcell.org/content/24/6/2318.long link]</li><br />
<li><br />
de Bakker MA, Fowler DA, den Oude K, Dondorp EM, Navas MC, Horbanczuk JO, Sire JY, Szczerbińska D, Richardson MK. 2013. Digit loss in archosaur evolution and the interplay between selection and constraints. Nature 500(7463):445-8. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v500/n7463/full/nature12336.html link]</li><br />
<li>Salazar-Ciudad I, Marín-Riera M. 2013. Adaptive dynamics under development-based genotype-phenotype maps. Nature 497:361-4. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v497/n7449/full/nature12142.html link]</li><br />
Highly recommended: read the [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/nature/journal/v497/n7449/full/nature12099.html News and Views] first!<br />
</ul><br />
<br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion7Questions.pdf}}<br><br />
<br />
===Week 8 (Oct. 15/17): Novelty (EJ)===<br />
Discussion Leader: Nasim<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Rebeiz M, Jikomes N, Kassner VA, Carroll SB. 2011. Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences. Proc Natl Acad Sci 108(25):10036-43. [http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/108/25/10036.full link]</li><br />
<li>Sharma B, Kramer E. 2013. Sub- and neo-functionalization of APETALA3 paralogs have contributed to the evolution of novel floral organ identity in Aquilegia (columbine, Ranunculaceae). New Phytol. 197(3):949-57. [http://ezproxy.lib.uconn.edu/login?url=http://onlinelibrary.wiley.com/doi/10.1111/nph.12078/full link]</li><br />
<li>Oliver JC, Tong XL, Gall LF, Piel WH, Monteiro A. 2012. A single origin for nymphalid butterfly eyespots followed by widespread loss of associated gene expression. PLoS Genet. 8(8):e1002893. [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002893 link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion8Questions.pdf}} <br><br />
===Week 9 (Oct. 22/24): Morphospace (CS)===<br />
Discussion Leader: class<br><br />
Discussion Readings:<br><br />
<ul><br />
<li> Bennett & Goswami. 2013. Statistical support for the hypothesis of developmental constraint in marsupial skull evolution. BMC Biology 11: 52.</li><br />
<li>Arbour & Lopez-Fernandez. 2013. Ecological variation in South American geophagine cichlids arose during an early burst of adaptive morphological and functional evolution. Proceedings of the Royal Society B-Biological Sciences 280: 20130849.</li><br />
<li>Roelants et al. 2011. Anuran radiations and the evolution of tadpole morphospace. Proceedings of the National Academy of Sciences USA 108: 8731-8736. 10.1073/pnas.1100633108</li><br />
</ul><br />
<br />
Discussion Questions:<br><br />
<br />
===Week 10 (Oct. 29/31): Modularity (EJ)===<br />
Discussion Leader: Wei<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Mallarino, R., P. R. Grant, et al. 2011. Two developmental modules establish 3D beak-shape variation in Darwin's finches. Proceedings of the National Academy of Sciences USA 108:4057-4062.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/108/10/4057 link]</li><br />
<li>Parsons KJ, Márquez E, Albertson RC. 2012. Constraint and opportunity: the genetic basis and evolution of modularity in the cichlid mandible. Am Nat. 179(1):64-78.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.jstor.org/stable/10.1086/663200 link]</li><br />
<li>Clune J, Mouret JB, Lipson H. 2013. The evolutionary origins of modularity. Proc Biol Sci. B 280(1755):20122863. <br />
[http://ezproxy.lib.uconn.edu/login?url=http://rspb.royalsocietypublishing.org/content/280/1755/20122863.long link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion10Questions.pdf}} <br><br />
<br />
===Week 11 (Nov. 5/7): Robustness and plasticity (CS)===<br />
Discussion Leader: Tim<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Scoville, A. G. and M. Pfrender. 2010. Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators. Proceedings of the National Academy of Sciences of the United States of America 107: 4260-4263. 10.1073/pnas.0912748107.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://www.pnas.org/content/107/9/4260.full link]</li><br />
<li>Gunter HM, Fan S, Xiong F, Franchini P, Fruciano C, Meyer A. 2013. Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Mol Ecol. 22(17):4516-31.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://onlinelibrary.wiley.com/doi/10.1111/mec.12417/full link] </li><br />
<li>Sgrò CM, Wegener B, Hoffmann AA. 2010. A naturally occurring variant of Hsp90 that is associated with decanalization. Proc Biol Sci. 77(1690):2049-57.<br />
[http://ezproxy.lib.uconn.edu/login?url=http://rspb.royalsocietypublishing.org/content/277/1690/2049.long link]</li><br />
</ul><br />
Discussion Questions:<br><br />
<br />
===Week 12 (Nov. 12/14): Evolvability (EJ)===<br />
Discussion Leader: Ellen<br><br />
Discussion Readings:<br><br />
<ul><br />
<li>Woods RJ, Barrick JE, Cooper TF, Shrestha U, Kauth MR, Lenski RE. 2011. Second-order selection for evolvability in a large Escherichia coli population. Science 331(6023):1433-6. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencemag.org/content/331/6023/1433.long link]</li><br />
<li>Garfield DA, Runcie DE, Babbitt CC, Haygood R, Nielsen WJ, Wray GA. 2013. The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network. PLoS Biol 11(10): e1001696. [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001696 link]</li><br />
<li>Rabosky DL, Santini F, Eastman J, Smith SA, Sidlauskas B, Chang J, Alfaro ME. 2013. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation. Nat Commun. 4:1958. [http://ezproxy.lib.uconn.edu/login?url=http://www.nature.com/ncomms/2013/130606/ncomms2958/full/ncomms2958.html link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion12Questions.pdf}} <br><br />
<br />
===Week 13 (Nov. 19/21): Case studies (EJ) and heterochrony (CS)===<br />
Discussion Leader: Class--email a question to Elizabeth<br><br />
Discussion Readings: Let'st just focus on the future, instead of case studies. So forget about Arnoult et al. (with apologies to those of you who have already read it).<br><br />
<ul><br />
<li>Irschick DJ, Albertson RC, Brennan P, Podos J, Johnson NA, Patek S, Dumont E. 2013. Evo-devo beyond morphology: from genes to resource use. Trends Ecol Evol. 28(5):267-73. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S0169534712003151 link]</li><br />
<li>Parsons KJ, Albertson RC. 2013. Unifying and generalizing the two strands of evo-devo. Trends Ecol Evol. 28(10):584-91. [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S0169534713001675 link]</li><br />
</ul><br />
Optional Reading for those interested in micro-evo-devo:<br />
<ul><br />
<li>Nunes MD, Arif S, Schlötterer C, McGregor AP. 2013. A perspective on micro-evo-devo: progress and potential. Genetics 195(3):625-34. [http://ezproxy.lib.uconn.edu/login?url=http://www.genetics.org/content/195/3/625.long link]</li><br />
</ul><br />
Discussion Questions: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/evodevo/EEB5333_Fall2013_Discussion13Questions.pdf}} <br><br />
<font color="#FF3300"><b>Reminder:</b></font> Project papers are due on Monday, Nov. 25!<br><br><br />
<br />
===Week 14 (Nov. 26/28): Happy Thanksgiving!===<br />
<br />
===Week 15 (Dec. 3/5): Project Presentations ===<br />
[[Category:EEB Courses]]<br />
<br />
Here's the presentation order. Of course, any swap that is mutually agreeable to you is fine with us. Talks should be 15 min., with 5 min. for questions. Please add your title and suggest a background reading. (Dister and Wei: email that information and we'll add it for you).<br><br><br />
<b>Tuesday, December 3</b><br />
<ul><br />
<li>Cera: How does development evolve under selection for signaling morphology? [http://www.biomedcentral.com.ezproxy.lib.uconn.edu/1471-2148/13/158 suggested reading]</li><br />
<li>Ellen</li><br />
<li>Wei</li><br />
<li>Jeff: Diadromy: why & how. </li><br />
</ul><br />
<br />
<b>Thursday, December 5</b><br />
<ul><br />
<li>Nora: Identifying plant functional trait novelty via transgressive segregation [http://link.springer.com/article/10.1007/s11692-012-9209-0/fulltext.html link]</li><br />
<li>Nasim</li><br />
<li>Dister: Arbuscular Mycorrhizal: Symbiosis and the Development of Embryophytes [http://ezproxy.lib.uconn.edu/login?url=http://www.sciencedirect.com/science/article/pii/S1369526606001786 link]</li><br />
<li>Tim</li><br />
</ul></div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=27439Marine Biology Seminar2013-11-30T05:14:44Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A || Reviews describing grand challenges and new frontiers<br />
|-<br />
|-<br />
||B || Genomic responses to human disturbance, especially toxins/pollutants<br />
|-<br />
|-<br />
||C || Evolutionary genomics of halotolerance and transitions to novel salinity environments<br />
|-<br />
|-<br />
||D || Effects of invasive species on trophic relationships <br />
|-<br />
|-<br />
||E || Evolution of morphology and performance in divergent populations<br />
|-<br />
|-<br />
||F || Linking behavioral differences to variability in life history and habitat use<br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-<br />
||H || <br />
|-<br />
|-<br />
||I || <br />
|-<br />
|-<br />
|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.<br />
|| Eric <br />
|-<br />
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon<br />
|-<br />
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff <br />
|-<br />
|9/20|| D || Nilsson et al. 2012. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs. Freshwater Biology, 57, 10-23 || Mike<br />
|-<br />
|9/27|| B || Lanham et al. 2012. Sensitivity to Dioxin Decreases as Zebrafish Mature. Tox Sci 127:360-370 || Lindsay<br />
|-<br />
|10/4|| C || Urbina, M. A., P. M. Schulte, J. S. Bystriansky, and C. N. Glover. 2013. Differential expression of Na+, K+-ATPase alpha-1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 183:345-357.<br />
|| Becca<br />
|-<br />
|10/11|| C || Martinez et al. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Trans. Am. Fish Soc. 140:829-842 || Jon<br />
|-<br />
|10/18|| E || Dalziel AC, Vines TH, Schulte PM. 2012. Reductions in prolonged swimming capacity following freshwater colonization in multiple threespine stickleback populations. Evolution 66-4:1226-1239 || Jeff <br />
|-<br />
|10/25|| D || Burlakova LE, Karatayev AY, Karatayev VA. 2012. Invasive mussels induce community changes by increasing habitat complexity. Hydrobiologia 685:121-134 || Mike<br />
|-<br />
|11/1|| || Taking the week off to accommodate Kinnison visit || <br />
|-<br />
|11/8|| F || Edeline E, Dufour S, Elie P (2005) Role of glass eel salinity preference in the control of habitat selection and growth plasticity in Anguilla anguilla. Mar Ecol-Prog Ser 304:191-199 || Sam<br />
|-<br />
|11/15|| E|| Jones AW, Palkovacs EP, Post DM. 2013. Recent parallel divergence in body shape and diet source of alewife life history forms. Evolutionary Ecology: 1-13. || Jon<br />
|-<br />
|11/22|| || Adeyemi, J. A., Deaton, L. E., Pesacreta, T. C., Klerks, P. L. (2012) Effects of copper on osmoregulation in sheepshead minnow, Cyprinodon variegatus acclimated to different salinities. Aquatic Toxicology, 109, 111-117. || Lindsay<br />
|-<br />
|12/6|| C-ish || Vega GC & Wiens JJ. 2012. Why are there so few fish in the sea? Proc. Roy. Soc. B. 279:2323-2329 || Jeff<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''AUGUST 30'''<br/><br />
<br/><br />
<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience<br />
<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 6'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 13'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 20'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Nilsson%20et%20al%202012.pdf}}Nilsson et al 2012 Freshwater Biology<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Mike%27sDiscussionQs_9%2C20%2C13.docx}}Mike'sDiscussionQs_9,20,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 27'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Toxicological%20Sciences.pdf}}Lanham et al 2012 Toxicological Sciences.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Discussion.docx}}Lanham et al 2012 Discussion.docx<br />
<br/><br />
<br />
'''OCTOBER 4'''<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%202012%20j%20comp%20physiol%20b.pdf}}Urbina et al 2012 J. Comp Physiol B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%20Discussion.pdf}}Urbina et al Discussion.pdf<br />
<br/><br />
<br />
'''OCTOBER 11'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%202011.pdf}} Martinez et al 2011.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%20Discussion.pdf}} Martinez et al Discussion.pdf<br />
<br/><br />
<br />
<br />
'''OCTOBER 18'''<br/><br />
<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_UcritDiffer3SSB.pdf}}Dalziel12_UcritDiffer3SSB.pdf<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_suppl.doc}}Dalziel12_suppl.doc<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/DalzielDiscussion_10%2C18%2C13.docx}}DalzielDiscussion_10,18,13.docx<br />
<br />
'''OCTOBER 25'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Burlakova%20et%20al%202012.pdf}}Burlakova et al 2012.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Burlakova%20et%20al%20%202012%20discussion.docx}}Burlakova et al 2012 discussion.docx<br />
<br/><br />
<br />
'''NOVEMBER 1'''<br/><br />
<br/><br />
No meeting<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 8'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Edeline%20et%20al%202005..pdf}}Edeline et al 2005 MEPS<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 15'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/JonesPalksPostEvolEco2013.pdf}} JonesPalksPostEvolEco2013.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Jones%20et%20al%20discussion.pdf}} Jones et al discussion.pdf<br />
<br />
<br/><br />
<br />
'''NOVEMBER 22'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Adeyemi%2C%20J%202012%20Aquatic%20Toxicology.pdf}}Adeyemi, J 2012 Aquatic Toxicology.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Adeyemi%20et%20al%20Discussion.docx}}Adeyemi et al Discussion.docx<br />
<br/><br />
'''DECEMBER 5'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens12_FewSWfish.pdf}}Vega&Wiens12_FewSWfish.pdf<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens_FigS1.pdf}}Vega&Wiens_FigS1.pdf<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens_FigS2.pdf}}Vega&Wiens_FigS2.pdf<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens_TabS1.pdf}}Vega&Wiens_TabS1.pdf<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens_TabS2.pdf}}Vega&Wiens_TabS2.pdf<br />
=='''Past Marine Biology Seminars'''==<br />
<br/><br />
<br />
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]<br />
<br />
<br/> <br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=27438Marine Biology Seminar2013-11-30T05:02:34Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A || Reviews describing grand challenges and new frontiers<br />
|-<br />
|-<br />
||B || Genomic responses to human disturbance, especially toxins/pollutants<br />
|-<br />
|-<br />
||C || Evolutionary genomics of halotolerance and transitions to novel salinity environments<br />
|-<br />
|-<br />
||D || Effects of invasive species on trophic relationships <br />
|-<br />
|-<br />
||E || Evolution of morphology and performance in divergent populations<br />
|-<br />
|-<br />
||F || Linking behavioral differences to variability in life history and habitat use<br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-<br />
||H || <br />
|-<br />
|-<br />
||I || <br />
|-<br />
|-<br />
|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.<br />
|| Eric <br />
|-<br />
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon<br />
|-<br />
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff <br />
|-<br />
|9/20|| D || Nilsson et al. 2012. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs. Freshwater Biology, 57, 10-23 || Mike<br />
|-<br />
|9/27|| B || Lanham et al. 2012. Sensitivity to Dioxin Decreases as Zebrafish Mature. Tox Sci 127:360-370 || Lindsay<br />
|-<br />
|10/4|| C || Urbina, M. A., P. M. Schulte, J. S. Bystriansky, and C. N. Glover. 2013. Differential expression of Na+, K+-ATPase alpha-1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 183:345-357.<br />
|| Becca<br />
|-<br />
|10/11|| C || Martinez et al. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Trans. Am. Fish Soc. 140:829-842 || Jon<br />
|-<br />
|10/18|| E || Dalziel AC, Vines TH, Schulte PM. 2012. Reductions in prolonged swimming capacity following freshwater colonization in multiple threespine stickleback populations. Evolution 66-4:1226-1239 || Jeff <br />
|-<br />
|10/25|| D || Burlakova LE, Karatayev AY, Karatayev VA. 2012. Invasive mussels induce community changes by increasing habitat complexity. Hydrobiologia 685:121-134 || Mike<br />
|-<br />
|11/1|| || Taking the week off to accommodate Kinnison visit || <br />
|-<br />
|11/8|| F || Edeline E, Dufour S, Elie P (2005) Role of glass eel salinity preference in the control of habitat selection and growth plasticity in Anguilla anguilla. Mar Ecol-Prog Ser 304:191-199 || Sam<br />
|-<br />
|11/15|| E|| Jones AW, Palkovacs EP, Post DM. 2013. Recent parallel divergence in body shape and diet source of alewife life history forms. Evolutionary Ecology: 1-13. || Jon<br />
|-<br />
|11/22|| || Adeyemi, J. A., Deaton, L. E., Pesacreta, T. C., Klerks, P. L. (2012) Effects of copper on osmoregulation in sheepshead minnow, Cyprinodon variegatus acclimated to different salinities. Aquatic Toxicology, 109, 111-117. || Lindsay<br />
|-<br />
|12/6|| C-ish || Vega GC & Wiens JJ. 2012. Why are there so few fish in the sea? Proc. Roy. Soc. B. 279:2323-2329 || Jeff<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''AUGUST 30'''<br/><br />
<br/><br />
<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience<br />
<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 6'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 13'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 20'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Nilsson%20et%20al%202012.pdf}}Nilsson et al 2012 Freshwater Biology<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Mike%27sDiscussionQs_9%2C20%2C13.docx}}Mike'sDiscussionQs_9,20,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 27'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Toxicological%20Sciences.pdf}}Lanham et al 2012 Toxicological Sciences.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Discussion.docx}}Lanham et al 2012 Discussion.docx<br />
<br/><br />
<br />
'''OCTOBER 4'''<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%202012%20j%20comp%20physiol%20b.pdf}}Urbina et al 2012 J. Comp Physiol B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%20Discussion.pdf}}Urbina et al Discussion.pdf<br />
<br/><br />
<br />
'''OCTOBER 11'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%202011.pdf}} Martinez et al 2011.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%20Discussion.pdf}} Martinez et al Discussion.pdf<br />
<br/><br />
<br />
<br />
'''OCTOBER 18'''<br/><br />
<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_UcritDiffer3SSB.pdf}}Dalziel12_UcritDiffer3SSB.pdf<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_suppl.doc}}Dalziel12_suppl.doc<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/DalzielDiscussion_10%2C18%2C13.docx}}DalzielDiscussion_10,18,13.docx<br />
<br />
'''OCTOBER 25'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Burlakova%20et%20al%202012.pdf}}Burlakova et al 2012.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Burlakova%20et%20al%20%202012%20discussion.docx}}Burlakova et al 2012 discussion.docx<br />
<br/><br />
<br />
'''NOVEMBER 1'''<br/><br />
<br/><br />
No meeting<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 8'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Edeline%20et%20al%202005..pdf}}Edeline et al 2005 MEPS<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 15'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/JonesPalksPostEvolEco2013.pdf}} JonesPalksPostEvolEco2013.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Jones%20et%20al%20discussion.pdf}} Jones et al discussion.pdf<br />
<br />
<br/><br />
<br />
'''NOVEMBER 22'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Adeyemi%2C%20J%202012%20Aquatic%20Toxicology.pdf}}Adeyemi, J 2012 Aquatic Toxicology.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Adeyemi%20et%20al%20Discussion.docx}}Adeyemi et al Discussion.docx<br />
<br/><br />
'''DECEMBER 5'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens12_FewSWfish.pdf}}Vega&Wiens12_FewSWfish.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens_FigS1.pdf}}Vega&Wiens_FigS1.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Vega%26Wiens_FigS2.pdf}}Vega&Wiens_FigS2.pdf<br />
<br />
=='''Past Marine Biology Seminars'''==<br />
<br/><br />
<br />
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]<br />
<br />
<br/> <br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=27105Marine Biology Seminar2013-10-18T01:01:04Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A || Reviews describing grand challenges and new frontiers<br />
|-<br />
|-<br />
||B || Genomic responses to human disturbance, especially toxins/pollutants<br />
|-<br />
|-<br />
||C || Evolutionary genomics of halotolerance and transitions to novel salinity environments<br />
|-<br />
|-<br />
||D || Effects of invasive species on trophic relationships <br />
|-<br />
|-<br />
||E || Evolution of performance in divergent populations<br />
|-<br />
|-<br />
||F || <br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-<br />
||H || <br />
|-<br />
|-<br />
||I || <br />
|-<br />
|-<br />
|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.<br />
|| Eric <br />
|-<br />
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon<br />
|-<br />
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff <br />
|-<br />
|9/20|| D || Nilsson et al. 2012. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs. Freshwater Biology, 57, 10-23 || Mike<br />
|-<br />
|9/27|| B || Lanham et al. 2012. Sensitivity to Dioxin Decreases as Zebrafish Mature. Tox Sci 127:360-370 || Lindsay<br />
|-<br />
|10/4|| C || Urbina, M. A., P. M. Schulte, J. S. Bystriansky, and C. N. Glover. 2013. Differential expression of Na+, K+-ATPase alpha-1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 183:345-357.<br />
|| Becca<br />
|-<br />
|10/11|| C || Martinez et al. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Trans. Am. Fish Soc. 140:829-842 || Jon<br />
|-<br />
|10/18|| E || Dalziel AC, Vines TH, Schulte PM. 2012. Reductions in prolonged swimming capacity following freshwater colonization in multiple threespine stickleback populations. Evolution 66-4:1226-1239 || Jeff <br />
|-<br />
|10/25|| || || Mike<br />
|-<br />
|11/1|| || || Lindsay<br />
|-<br />
|11/8|| || || Sam<br />
|-<br />
|11/15|| C || Kozak GM, Brennan RS, Berdan EL, Fuller RC, Whitehead A. 2013. Functional and population genomic divergence within and between two species of killifish adapted to different osmotic niche. Evolution || Jon<br />
|-<br />
|11/22|| || || Jeff<br />
|-<br />
|12/6|| || || Lindsay<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''AUGUST 30'''<br/><br />
<br/><br />
<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience<br />
<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 6'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 13'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 20'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Nilsson%20et%20al%202012.pdf}}Nilsson et al 2012 Freshwater Biology<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Mike%27sDiscussionQs_9%2C20%2C13.docx}}Mike'sDiscussionQs_9,20,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 27'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Toxicological%20Sciences.pdf}}Lanham et al 2012 Toxicological Sciences.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Discussion.docx}}Lanham et al 2012 Discussion.docx<br />
<br/><br />
<br />
'''OCTOBER 4'''<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%202012%20j%20comp%20physiol%20b.pdf}}Urbina et al 2012 J. Comp Physiol B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%20Discussion.pdf}}Urbina et al Discussion.pdf<br />
<br/><br />
<br />
'''OCTOBER 11'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%202011.pdf}} Martinez et al 2011.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%20Discussion.pdf}} Martinez et al Discussion.pdf<br />
<br/><br />
<br />
<br />
'''OCTOBER 18'''<br/><br />
<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_UcritDiffer3SSB.pdf}}Dalziel12_UcritDiffer3SSB.pdf<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_suppl.doc}}Dalziel12_suppl.doc<br />
<br/><br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/DalzielDiscussion_10%2C18%2C13.docx}}DalzielDiscussion_10,18,13.docx<br />
<br />
'''OCTOBER 25'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 1'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 8'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 15'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 22'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
'''DECEMBER 5'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
=='''Past Marine Biology Seminars'''==<br />
<br/><br />
<br />
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]<br />
<br />
<br/> <br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=27044Marine Biology Seminar2013-10-10T22:00:54Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A || Reviews describing grand challenges and new frontiers<br />
|-<br />
|-<br />
||B || Genomic responses to human disturbance, especially toxins/pollutants<br />
|-<br />
|-<br />
||C || Evolutionary genomics of halotolerance and transitions to novel salinity environments<br />
|-<br />
|-<br />
||D || Effects of invasive species on trophic relationships <br />
|-<br />
|-<br />
||E || Evolution of performance in divergent populations<br />
|-<br />
|-<br />
||F || <br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-<br />
||H || <br />
|-<br />
|-<br />
||I || <br />
|-<br />
|-<br />
|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.<br />
|| Eric <br />
|-<br />
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon<br />
|-<br />
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff <br />
|-<br />
|9/20|| D || Nilsson et al. 2012. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs. Freshwater Biology, 57, 10-23 || Mike<br />
|-<br />
|9/27|| B || Lanham et al. 2012. Sensitivity to Dioxin Decreases as Zebrafish Mature. Tox Sci 127:360-370 || Lindsay<br />
|-<br />
|10/4|| C || Urbina, M. A., P. M. Schulte, J. S. Bystriansky, and C. N. Glover. 2013. Differential expression of Na+, K+-ATPase alpha-1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 183:345-357.<br />
|| Becca<br />
|-<br />
|10/11|| C || Martinez et al. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Trans. Am. Fish Soc. 140:829-842 || Jon<br />
|-<br />
|10/18|| E || Dalziel AC, Vines TH, Schulte PM. 2012. Reductions in prolonged swimming capacity following freshwater colonization in multiple threespine stickleback populations. Evolution 66-4:1226-1239 || Jeff <br />
|-<br />
|10/25|| || || Mike<br />
|-<br />
|11/1|| || || Lindsay<br />
|-<br />
|11/8|| || || Sam<br />
|-<br />
|11/15|| || || Jon<br />
|-<br />
|11/22|| || || Jeff<br />
|-<br />
|12/6|| || || Lindsay<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''AUGUST 30'''<br/><br />
<br/><br />
<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience<br />
<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 6'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 13'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 20'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Nilsson%20et%20al%202012.pdf}}Nilsson et al 2012 Freshwater Biology<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Mike%27sDiscussionQs_9%2C20%2C13.docx}}Mike'sDiscussionQs_9,20,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 27'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Toxicological%20Sciences.pdf}}Lanham et al 2012 Toxicological Sciences.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Discussion.docx}}Lanham et al 2012 Discussion.docx<br />
<br/><br />
<br />
'''OCTOBER 4'''<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%202012%20j%20comp%20physiol%20b.pdf}}Urbina et al 2012 J. Comp Physiol B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%20Discussion.pdf}}Urbina et al Discussion.pdf<br />
<br/><br />
<br />
'''OCTOBER 11'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%202011.pdf}}Martinez et al 2011.pdf<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''OCTOBER 18'''<br/><br />
<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_UcritDiffer3SSB.pdf}}Dalziel12_UcritDiffer3SSB.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_suppl.doc}}Dalziel12_suppl.doc<br />
<br/><br />
<br />
<br />
'''OCTOBER 25'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 1'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 8'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 15'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 22'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
'''DECEMBER 5'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
=='''Past Marine Biology Seminars'''==<br />
<br/><br />
<br />
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]<br />
<br />
<br/> <br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=27043Marine Biology Seminar2013-10-10T21:54:41Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A || Reviews describing grand challenges and new frontiers<br />
|-<br />
|-<br />
||B || Genomic responses to human disturbance, especially toxins/pollutants<br />
|-<br />
|-<br />
||C || Evolutionary genomics of halotolerance and transitions to novel salinity environments<br />
|-<br />
|-<br />
||D || Effects of invasive species on trophic relationships <br />
|-<br />
|-<br />
||E || <br />
|-<br />
|-<br />
||F || <br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-<br />
||H || <br />
|-<br />
|-<br />
||I || <br />
|-<br />
|-<br />
|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.<br />
|| Eric <br />
|-<br />
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon<br />
|-<br />
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff <br />
|-<br />
|9/20|| D || Nilsson et al. 2012. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs. Freshwater Biology, 57, 10-23 || Mike<br />
|-<br />
|9/27|| B || Lanham et al. 2012. Sensitivity to Dioxin Decreases as Zebrafish Mature. Tox Sci 127:360-370 || Lindsay<br />
|-<br />
|10/4|| C || Urbina, M. A., P. M. Schulte, J. S. Bystriansky, and C. N. Glover. 2013. Differential expression of Na+, K+-ATPase alpha-1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 183:345-357.<br />
|| Becca<br />
|-<br />
|10/11|| C || Martinez et al. 2011. A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout. Trans. Am. Fish Soc. 140:829-842 || Jon<br />
|-<br />
|10/18|| || Dalziel AC, Vines TH, Schulte PM. 2012. Reductions in prolonged swimming capacity following freshwater colonization in multiple threespine stickleback populations. Evolution 66-4:1226-1239 || Jeff <br />
|-<br />
|10/25|| || || Mike<br />
|-<br />
|11/1|| || || Lindsay<br />
|-<br />
|11/8|| || || Sam<br />
|-<br />
|11/15|| || || Jon<br />
|-<br />
|11/22|| || || Jeff<br />
|-<br />
|12/6|| || || Lindsay<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''AUGUST 30'''<br/><br />
<br/><br />
<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience<br />
<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 6'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 13'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 20'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Nilsson%20et%20al%202012.pdf}}Nilsson et al 2012 Freshwater Biology<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Mike%27sDiscussionQs_9%2C20%2C13.docx}}Mike'sDiscussionQs_9,20,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 27'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Toxicological%20Sciences.pdf}}Lanham et al 2012 Toxicological Sciences.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Lanham%20et%20al%202012%20Discussion.docx}}Lanham et al 2012 Discussion.docx<br />
<br/><br />
<br />
'''OCTOBER 4'''<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%202012%20j%20comp%20physiol%20b.pdf}}Urbina et al 2012 J. Comp Physiol B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Urbina%20et%20al%20Discussion.pdf}}Urbina et al Discussion.pdf<br />
<br/><br />
<br />
'''OCTOBER 11'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Martinez%20et%20al%202011.pdf}}Martinez et al 2011.pdf<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''OCTOBER 18'''<br/><br />
<br/>{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_UcritDiffer3SSB.pdf}}Dalziel12_UcritDiffer3SSB.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Dalziel12_suppl.doc}}Dalziel12_suppl.doc<br />
<br/><br />
<br />
<br />
'''OCTOBER 25'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 1'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 8'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
<br />
'''NOVEMBER 15'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 22'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
'''DECEMBER 5'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
=='''Past Marine Biology Seminars'''==<br />
<br/><br />
<br />
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]<br />
<br />
<br/> <br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=26791Marine Biology Seminar2013-09-18T21:21:24Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A || Reviews describing grand challenges and new frontiers<br />
|-<br />
|-<br />
||B || Genomic responses to human disturbance, especially toxins/pollutants<br />
|-<br />
|-<br />
||C || Evolutionary genomics of halotolerance<br />
|-<br />
|-<br />
||D || <br />
|-<br />
|-<br />
||E || <br />
|-<br />
|-<br />
||F || <br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-<br />
||H || <br />
|-<br />
|-<br />
||I || <br />
|-<br />
|-<br />
|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.<br />
|| Eric <br />
|-<br />
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon<br />
|-<br />
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff <br />
|-<br />
|9/20|| || || Mike<br />
|-<br />
|9/27|| || || Lindsay<br />
|-<br />
|10/4|| || || Becca<br />
|-<br />
|10/11|| || || Jon<br />
|-<br />
|10/18|| || || Jeff<br />
|-<br />
|10/25|| || || Mike<br />
|-<br />
|11/1|| || || Lindsay<br />
|-<br />
|11/8|| || || Sam<br />
|-<br />
|11/15|| || || Jon<br />
|-<br />
|11/22|| || || Jeff<br />
|-<br />
|12/6|| || || Lindsay<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''AUGUST 30'''<br/><br />
<br/><br />
<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience<br />
<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 6'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 13'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx<br />
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'''SEPTEMBER 20'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Nilsson%20et%20al%202012.pdf}}Nilsson et al 2012 Freshwater Biology<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Mike%27sDiscussionQs_9%2C20%2C13.docx}}Mike'sDiscussionQs_9,20,13.docx<br />
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'''SEPTEMBER 27'''<br/><br />
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'''OCTOBER 4'''<br />
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'''OCTOBER 11'''<br/><br />
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'''OCTOBER 18'''<br/><br />
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'''OCTOBER 25'''<br/><br />
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'''NOVEMBER 1'''<br/><br />
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'''NOVEMBER 8'''<br/><br />
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'''NOVEMBER 15'''<br/><br />
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'''NOVEMBER 22'''<br/><br />
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<br/><br />
'''DECEMBER 5'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
=='''Past Marine Biology Seminars'''==<br />
<br/><br />
<br />
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]<br />
<br />
<br/> <br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=26735Marine Biology Seminar2013-09-13T14:28:01Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2013 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202013%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A || Reviews describing grand challenges and new frontiers<br />
|-<br />
|-<br />
||B || Genomic responses to human disturbance, especially toxins/pollutants<br />
|-<br />
|-<br />
||C || Evolutionary genomics of halotolerance<br />
|-<br />
|-<br />
||D || <br />
|-<br />
|-<br />
||E || <br />
|-<br />
|-<br />
||F || <br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-<br />
||H || <br />
|-<br />
|-<br />
||I || <br />
|-<br />
|-<br />
|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||8/30|| A || Kültz et al. 2013. New Frontiers for Organismal Biology. BioScience 63:464-471.<br />
|| Eric <br />
|-<br />
|9/6|| B || Whitehead et al. 2013. Common mechanism underlies repeated evolution of extreme pollution tolerance. Proc. R. Soc. B 279:427-433 || Jon<br />
|-<br />
|9/13|| C || Hohenlohe et al 2012. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Phil Trans Roy Soc B 367:395-408 || Jeff <br />
|-<br />
|9/20|| || || Mike<br />
|-<br />
|9/27|| || || Lindsay<br />
|-<br />
|10/4|| || || Becca<br />
|-<br />
|10/11|| || || Jon<br />
|-<br />
|10/18|| || || Jeff<br />
|-<br />
|10/25|| || || Mike<br />
|-<br />
|11/1|| || || Lindsay<br />
|-<br />
|11/8|| || || Sam<br />
|-<br />
|11/15|| || || Jon<br />
|-<br />
|11/22|| || || Jeff<br />
|-<br />
|12/6|| || || Lindsay<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''AUGUST 30'''<br/><br />
<br/><br />
<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20et%20al%202013%20bioscience.pdf}}Kultz et al 2013 bioscience<br />
<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/notes%20and%20related%20reading%20kultz%20et%20al%202013%20bioscience.pdf}} Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 6'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead%20et%20al%202011%20proc%20B.pdf}}Whitehead et al 2011 proc B.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Whitehead2011Discussion.pdf}}Whitehead2011Discussion.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 13'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hohenlohe12_ParallelAdaptDiverg%26LD.pdf}}Hohenlohe et al 2012 Phil Trans Roy Soc B<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/HohenloheDiscussion_9%2C13%2C13.docx}}HohenloheDiscussion_9,13,13.docx<br />
<br/><br />
<br />
'''SEPTEMBER 20'''<br/><br />
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'''SEPTEMBER 27'''<br/><br />
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<br />
'''OCTOBER 4'''<br />
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'''OCTOBER 11'''<br/><br />
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'''OCTOBER 18'''<br/><br />
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'''OCTOBER 25'''<br/><br />
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<br />
'''NOVEMBER 1'''<br/><br />
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'''NOVEMBER 8'''<br/><br />
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'''NOVEMBER 15'''<br/><br />
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'''NOVEMBER 22'''<br/><br />
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<br/><br />
'''DECEMBER 5'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
<br/><br />
<br />
=='''Past Marine Biology Seminars'''==<br />
<br/><br />
<br />
* [[Marine_Biology_Seminar_2012|Marine_Biology_Seminar_2012]]<br />
<br />
<br/> <br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23357Marine Biology Seminar2012-10-11T20:41:31Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-<br />
|-<br />
||E || <br />
|-<br />
|-<br />
||F || Competition - linking empirical work to theory<br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff<br />
|-<br />
|10/08|| C (also B?) || Gomes-Mestre, I. and M. Tejado. 2003. Local adaptation of an anuran amphibian to osmotically stressful environments. Evolution 57(8): 1889-1899 || Jessie<br />
|-<br />
|10/15|| || Yamamoto, Y., M. S. Byerly, W. R. Jackman, and W. R. Jeffery. 2009. Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution. Developmental Biology 330:200-211.<br />
|| Emily<br />
|-<br />
|10/22|| F || Hart, S.P., Burgin, J.R., and D.J. Marshall. 2012. Revisiting competition in a classic model system using formal links between theory and data. Ecology. || Michael<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. || Jon<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| G || || Michael<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20Discussion_9%2C24%2C12.pdf}}Kultz Discussion_9,24,12.pdf<br />
'''OCTOBER 1'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale12_GCE_tilapiaTRPV4.pdf}}Seale12_GCE_tilapiaTRPV4.pdf<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale%20TRP%20Discussion_10%2C1%2C12.doc}}Seale TRP Discussion_10,1,12.doc<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Osmosensing_Pres.pdf}}Osmosensing_Pres.pdf<br />
'''OCTOBER 8'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Evolution2003.pdf}}Gomez_Mestre_and_Tejado.pdf<br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Jeffrey.sonic%20hedgehog%20expression%20link%20jaw%20and%20taste%20bud%20amplification%20with%20eye%20loss%20in%20cavefish.pdf}}Jeffrey.sonic hedgehog expression link jaw and taste bud amplification with eye loss in cavefish.pdf<br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hart%2C%20Burgin%2C%20%26%20Marshall%202012%20Ecology%20%28Revisiting%20competition%20in%20a%20classic%20model%20system%20using%20formal%20links%20between%20theory%20and%20data%29.pdf}} Hart, Burgin, & Marshall 2012 Ecology<br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23356Marine Biology Seminar2012-10-11T20:40:06Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-<br />
|-<br />
||E || <br />
|-<br />
|-<br />
||F || Competition - linking empirical work to theory<br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff<br />
|-<br />
|10/08|| C (also B?) || Gomes-Mestre, I. and M. Tejado. 2003. Local adaptation of an anuran amphibian to osmotically stressful environments. Evolution 57(8): 1889-1899 || Jessie<br />
|-<br />
|10/15|| || Yamamoto, Y., M. S. Byerly, W. R. Jackman, and W. R. Jeffery. 2009. Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution. Developmental Biology 330:200-211.<br />
|| Emily<br />
|-<br />
|10/22|| F || Hart, S.P., Burgin, J.R., and D.J. Marshall. 2012. Revisiting competition in a classic model system using formal links between theory and data. Ecology. || Michael<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. || Jon<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| G || || Michael<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20Discussion_9%2C24%2C12.pdf}}Kultz Discussion_9,24,12.pdf<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale12_GCE_tilapiaTRPV4.pdf}}Seale12_GCE_tilapiaTRPV4.pdf<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale%20TRP%20Discussion_10%2C1%2C12.doc}}Seale TRP Discussion_10,1,12.doc<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Osmosensing_Pres.pdf}}Osmosensing_Pres.pdf<br />
'''OCTOBER 8'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Evolution2003.pdf}}Gomez_Mestre_and_Tejado.pdf<br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Jeffrey.sonic%20hedgehog%20expression%20link%20jaw%20and%20taste%20bud%20amplification%20with%20eye%20loss%20in%20cavefish.pdf}}Jeffrey.sonic hedgehog expression link jaw and taste bud amplification with eye loss in cavefish.pdf<br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hart%2C%20Burgin%2C%20%26%20Marshall%202012%20Ecology%20%28Revisiting%20competition%20in%20a%20classic%20model%20system%20using%20formal%20links%20between%20theory%20and%20data%29.pdf}} Hart, Burgin, & Marshall 2012 Ecology<br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23355Marine Biology Seminar2012-10-11T20:38:27Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-<br />
|-<br />
||E || <br />
|-<br />
|-<br />
||F || Competition - linking empirical work to theory<br />
|-<br />
|-<br />
||G || <br />
|-<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff<br />
|-<br />
|10/08|| C (also B?) || Gomes-Mestre, I. and M. Tejado. 2003. Local adaptation of an anuran amphibian to osmotically stressful environments. Evolution 57(8): 1889-1899 || Jessie<br />
|-<br />
|10/15|| || Yamamoto, Y., M. S. Byerly, W. R. Jackman, and W. R. Jeffery. 2009. Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution. Developmental Biology 330:200-211.<br />
|| Emily<br />
|-<br />
|10/22|| F || Hart, S.P., Burgin, J.R., and D.J. Marshall. 2012. Revisiting competition in a classic model system using formal links between theory and data. Ecology. || Michael<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. || Jon<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| G || || Michael<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20Discussion_9%2C24%2C12.pdf}}Kultz Discussion_9,24,12.pdf<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale12_GCE_tilapiaTRPV4.pdf}}Seale12_GCE_tilapiaTRPV4.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale%20TRP%20Discussion_10%2C1%2C12.doc}}Seale TRP Discussion_10,1,12.doc<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Osmosensing_Pres.pdf}}Osmosensing_Pres.pdf<br />
'''OCTOBER 8'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Evolution2003.pdf}}Gomez_Mestre_and_Tejado.pdf<br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Jeffrey.sonic%20hedgehog%20expression%20link%20jaw%20and%20taste%20bud%20amplification%20with%20eye%20loss%20in%20cavefish.pdf}}Jeffrey.sonic hedgehog expression link jaw and taste bud amplification with eye loss in cavefish.pdf<br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hart%2C%20Burgin%2C%20%26%20Marshall%202012%20Ecology%20%28Revisiting%20competition%20in%20a%20classic%20model%20system%20using%20formal%20links%20between%20theory%20and%20data%29.pdf}} Hart, Burgin, & Marshall 2012 Ecology<br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23245Marine Biology Seminar2012-10-05T04:20:10Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-<br />
|-<br />
||E || <br />
|-<br />
|-<br />
||F || Habitat connectivity and different scales of diversity<br />
|-<br />
|-<br />
||G || Competition - linking empirical work to theory<br />
|-<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff<br />
|-<br />
|10/08|| C (also B?) || Gomes-Mestre, I. and M. Tejado. 2003. Local adaptation of an anuran amphibian to osmotically stressful environments. Evolution 57(8): 1889-1899 || Jessie<br />
|-<br />
|10/15|| || ||<br />
|-<br />
|10/22|| F || Akasaka, M. and N. Takamura. 2012. Hydrologic connection between ponds positively affects macrophyte alpha and gamma diversity but negatively affects beta diversity. Ecology. || Michael<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. || Jon<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| G || Hart, S.P., Burgin, J.R., and D.J. Marshall. 2012. Revisiting competition in a classic model system using formal links between theory and data. Ecology. || Michael<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20Discussion_9%2C24%2C12.pdf}}Kultz Discussion_9,24,12.pdf<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale12_GCE_tilapiaTRPV4.pdf}}Seale12_GCE_tilapiaTRPV4.pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Osmosensing_Pres.pdf}}Osmosensing_Pres.pdf<br />
'''OCTOBER 8'''<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Evolution2003.pdf}}Gomez_Mestre_and_Tejado.pdf<br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Akasaka%20%26%20Takamura%202012%20Ecology%20%28Hydrologic%20connection%20between%20ponds%20positively%20affects%20macrophyte%20alpha%20and%20gamma%20diversity%20but%20negatively%20affects%20beta%20diversity%29.pdf}} Akasaka & Takamura 2012 Ecology<br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hart%2C%20Burgin%2C%20%26%20Marshall%202012%20Ecology%20%28Revisiting%20competition%20in%20a%20classic%20model%20system%20using%20formal%20links%20between%20theory%20and%20data%29.pdf}} Hart, Burgin, & Marshall 2012 Ecology<br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23125Marine Biology Seminar2012-09-29T00:44:13Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff<br />
|-<br />
|10/08|| C (also B?) || TBA || Jessie<br />
|-<br />
|10/15|| || ||<br />
|-<br />
|10/22|| || ||<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. ||<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| || ||<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%20Discussion_9%2C24%2C12.pdf}}Kultz Discussion_9,24,12.pdf<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale12_GCE_tilapiaTRPV4.pdf}}Seale12_GCE_tilapiaTRPV4.pdf<br />
<br/><br />
<br />
'''OCTOBER 8'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23110Marine Biology Seminar2012-09-28T16:10:32Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff<br />
|-<br />
|10/08|| C (also B?) || TBA || Jessie<br />
|-<br />
|10/15|| || ||<br />
|-<br />
|10/22|| || ||<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. ||<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| || ||<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
<br/><br />
<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Seale12_GCE_tilapiaTRPV4.pdf}}Seale12_GCE_tilapiaTRPV4.pdf<br />
<br/><br />
<br />
'''OCTOBER 8'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23109Marine Biology Seminar2012-09-28T16:07:13Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || Seale, A.P., Watanabe, S., Breves, J.P., et al. 2012. Differential regulation of TRPV4 mRNA levels by acclimation salinity and extracellular osmolality in euryhaline tilapia. General & Comparative Endocrinology 178:123-130 || Jeff<br />
|-<br />
|10/08|| C (also B?) || TBA || Jessie<br />
|-<br />
|10/15|| || ||<br />
|-<br />
|10/22|| || ||<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. ||<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| || ||<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
<br/><br />
<br />
<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings 2007<br />
<br/><br />
<br />
'''OCTOBER 8'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23108Marine Biology Seminar2012-09-28T15:50:04Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || <br />
|| Jeff<br />
|-<br />
|10/08|| C (also B?) || TBA || Jessie<br />
|-<br />
|10/15|| || ||<br />
|-<br />
|10/22|| || ||<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. ||<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches Reading: Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699||Heidi<br />
|-<br />
|11/19|| || ||<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
<br/><br />
<br />
<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings 2007<br />
<br/><br />
<br />
'''OCTOBER 8'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>: {{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Marine_Biology_Seminar&diff=23107Marine Biology Seminar2012-09-28T15:47:22Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE MARINE BIOLOGY SEMINAR PAGE—FALL 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6483 Seminar in Marine Biology.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructor'''==<br />
<br/><br />
'''Eric Schultz''' (eric.schultz@uconn.edu)<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
<br />
<br/><br />
<br />
=='''Roadmap for the Semester'''==<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20guidelines.pdf}}Guidelines for the seminar<br/><br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Topic code'''<br />
|width=90%|'''General Topic'''<br />
|-<br />
||A ||Emerging methods in phylogenetics, ecomorphology and ecophysiology to examine the diversifying potential of adaptation in functional traits<br />
|-<br />
|-<br />
||B ||Osmosensing (osmoreception): How aquatic organisms detect water/ion imbalances<br />
|-<br />
|-<br />
||C ||Local adaptation in aquatic organisms<br />
|-<br />
|-<br />
||C' || Coevolution - Geographic Mosaic Theory and implications<br />
|-<br />
|-<br />
||D || The evolution of osmoregulatory function, and adaptations to divergent salinity regimes<br />
|-|}<br />
<br/><br />
<br />
{|border=1 cellpadding=10 cellspacing=0<br />
|width=10%|'''Date'''<br />
|width=10%|'''Topic code'''<br />
|width=65%|'''Assigned paper'''<br />
|width=25%|'''Discussion leader'''<br />
|-<br />
||9/10|| A || Near, T. J., A. Dornburg, K. L. Kuhn, J. T. Eastman, J. N. Pennington, T. Patarnello, L. Zane, D. A. Fernández, and C. D. Jones. 2012. Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes. Proceedings of the National Academy of Sciences 109:3434-3439 || Eric <br />
|-<br />
|9/17|| A || Betancur-R., et al. 2012. Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats. Ecology Letters 15:822-830 || Jon<br />
|-<br />
|9/24|| B || Kultz, D. 2012. The Combinatorial Nature of Osmosensing in Fishes. Physiology 27:259-275. || Jeff<br />
|-<br />
|10/01|| B || <br />
|| Jeff<br />
|-<br />
|10/08|| C (also B?) || TBA || Jessie<br />
|-<br />
|10/15|| || ||<br />
|-<br />
|10/22|| || ||Hutchings JA, Swain DP, Rowe S, Eddington JD, Puvanendran V, Brown JA (2007) Genetic variation in life-history reaction norms in a marine fish. Proc R Soc B-Biol Sci 274:1693-1699<br />
|-<br />
|10/29|| D || Berdan, E.L., and R.C. Fuller. 2012 Interspecific divergence of ionoregulatory physiology in killifish: insight into adaptation and speciation. J. Zool. ||<br />
|-<br />
|11/05|| C' || TBA || Jessie<br />
|-<br />
|11/12||E ||Detecting Intraspecific Variation in Life History Strategies: Molecular and Common Garden Approaches ||Heidi<br />
|-<br />
|11/19|| || ||<br />
|-<br />
|11/26|| || ''Thanksgiving "Break"'' ||<br />
|-<br />
|12/03|| || ||<br />
|-<br />
|}<br />
<br/><br />
<br />
=='''Papers and Notes to Download for Discussion'''==<br />
<br/><br />
'''SEPTEMBER 10'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/near%20et%20al%202012%20pnas_with%20SI.pdf}}Near et al. 2012 PNAS <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206483%20Fall%202012%20week%201%20notes%20and%20further%20reading.pdf}}Notes and further reading<br />
<br/><br />
<br />
'''SEPTEMBER 17'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Betancur-R%202012%20Ecol%20Letters%20.pdf}}Betancur-R 2012 Ecol Letters .pdf<br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/EEB%206482%20Fall%202012%20%E2%80%93%20Week%202.pdf}}EEB 6482 Fall 2012 – Week 2.pdf<br />
<br/><br />
<br />
'''SEPTEMBER 24'''<br/> <br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Kultz%2CD%202012_OsmosensingReview.pdf}} Kultz 2012 Physiology<br/><br />
<br/><br />
<br />
<br />
'''OCTOBER 1'''<br/><br />
<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings 2007<br />
<br/><br />
<br />
'''OCTOBER 8'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 15'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 22'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''OCTOBER 29'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 5'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 12'''<br/><br />
<br/>:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/marinebiologyseminar/restricted/Hutchings2007GeneticVariationLifeHistory.pdf}}Hutchings2007GeneticVariationLifeHistory.pdf<br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 19'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
'''NOVEMBER 26'''<br/><br />
<br/><br />
<font color="#CC000">'''THANKSGIVING HOLIDAY—GO HOME!!''' <font color="#000000"> <br />
<br/><br />
<br/><br />
<br />
'''DECEMBER 3'''<br/><br />
<br/><br />
<br/><br />
<br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Graduate_Student_Symposium_2012&diff=21221Graduate Student Symposium 20122012-02-25T17:54:07Z<p>Jeffrey Divino: </p>
<hr />
<div><center> <big>''' <br />
== Saturday, March 3, 2012 == <br />
==== Biology/Physics Building Room 130, 9:00am to ~ 4:00pm ====<br />
'''</big> </center> <br><br />
<br><br />
The '''EEB Graduate Student Symposium''' is an all day event where graduate students present their research to other graduate students and faculty. Any EEB graduate student can present: BSMS, masters, PhD, old and new students. New graduate students usually present research ideas or preliminary data, while those more ‘seasoned’ students present their most recent results, often in preparation for upcoming spring and summer meetings. <br />
<br><br />
<center>[[Image:picheader1.gif]]</center><br />
__NOEDITSECTION__<br />
<br />
==Schedule==<br />
{| border="1" cellpadding="2" <br />
!style="background:#efefef;" width="80" align="center"|Time<br />
!style="background:#efefef;" width="120"|Speaker<br />
!style="background:#efefef;" width="450"|Title<br />
|- <br />
!style="background:#efefef;"| 8:30-9:00 || || Coffee & Tea<br />
|- <br />
| 9:00-9:15 || Dr. Kent Holsinger || Welcome address <br />
|- <br />
| 9:15-9:30 || Laura Cisneros|| Effects of landscape structure on multiple dimensions of bat biodiversity<br />
|- <br />
| 9:30-9:45 || Vanessa Boukili || Refining ecological restoration techniques in the tropics<br />
|- <br />
| 9:45-10:00 ||Lily Lewis || TBA (Dung moss genus Tetraplodon)<br />
|- <br />
| 10:00-10:15 || Kellie Kuhn|| TBA<br />
|- <br />
| 10:15-10:30 || Jon Velotta || Sequencing and de novo assembly of the alewife gill transcriptome<br />
|- <br />
!style="background:#efefef;"| 10:30-11:00 || || '''Morning Break - Drinks and Fruit'''<br />
|- <br />
| 11:00-11:15 || Jessie Rack || Behavioral responses of ''Ambystoma maculatum'' larvae to predator chemical cues on a geographic scale<br />
|- <br />
| 11:15-11:30 || Jayme Csonka || Late Devonian Conichnus from Tioga, Pennsylvania: Evidence of Asexual Sea Anemone Reproduction<br />
|- <br />
| 11:30-11:45 || Brigette Zacharczenko || Caterpillar mysteries: mimicry and extreme phenotypic changes<br />
|- <br />
| 11:45-12:00 || Jeffrey Divino || Hold the salt! How sticklebacks deal with changes in salinity <br />
|- <br />
!style="background:#efefef;"| 12:00-1:30 || || Lunch - Sandwiches and Salad<br />
|- <br />
| 1:30-2:00 || Dr. Massimo Pigliucci, Professor, Department of Philosophy, CUNY-Lehman and CUNY-Graduate Center || Keynote Address: On the many meanings of "doing theory" in biology<br />
|- <br />
| 2:00-2:15 ||Hamid Razifard || Elatine (riverworts): the coolest of plants! <br />
|- <br />
| 2:15-2:30 || Manette Sandor || Remnant Trees<br />
|- <br />
| 2:30-2:45 || Veronica Bueno || tapeworms of neotropical freshwater stingrays<br />
|- <br />
| 2:45-3:00 || Johanna Elsensohn || Spotted Wing Drosophila <br />
|- <br />
| 3:00-3:15 || Heidi Golden|| Climate Change and Arctic Grayling Metapopulation Dynamics<br />
|- <br />
| 3:15-3:30 || Alejandro Rico-Guevara || Imagine if you could see in high-speed...<br />
|- <br />
| 3:30-3:45 || Robert Roehm || Land Use Patterns and Biodiversity in NE Ephemeral Pools <br />
|- <br />
!style="background:#efefef;" | 3:45-4:00 || || '''Speed Talks'''<br />
|- <br />
| 3:45-3:50 ||Kasey Pregler || <br />
|- <br />
| 3:50-3:55 ||Russ Meister || <br />
|- <br />
| 3:55-4:00 || Photo Contest Results ||<br />
|- <br />
|}<br />
<center>[[Image:picheader1.gif]]</center><br />
<br />
__NOEDITSECTION__<br />
<br />
==Abstracts==<br />
<br />
<span id="NAME">''' Name'''</span><br />
<br> Title <br><br />
Abstract<br />
<br />
<span id= "NAME"> '''Dr. Massimo Pigliucci''' </span><br />
<br> Keynote Address: On the many meanings of "doing theory" in biology <br><br />
“Theoretical biology” is a surprisingly heterogeneous field, partly because it encompasses “doing theory” across disciplines as diverse as molecular biology, systematics, ecology and evolutionary biology. Moreover, it is done in a stunning variety of different ways, using anything from formal analytical models to computer simulations, from graphic representations to verbal arguments. In this talk I explore a number of aspects of what it means to do theoretical biology, and how they compare with the allegedly much more restricted sense of theory in the physical sciences. I also tackle a recent trend toward the presentation of all-encompassing theories in the biological sciences, from general theories of ecology to a recent attempt to provide a conceptual framework for the entire set of biological disciplines. Finally, I discuss the roles played by philosophers of science in criticizing and shaping biological theorizing.<br />
<br />
<span id="NAME">''' Jayme Csonka '''</span><br />
<br>Late Devonian Conichnus from Tioga, Pennsylvania: Evidence of Asexual Sea Anemone Reproduction <br><br />
A long section of Famennian (Late Devonian) strata along US Route 15 in Tioga, Pennsylvania exposes the transition between the shallow marine Lock Haven Formation and the terrestrial Catskill Formation. Numerous specimens of the ichnofossil Conichnus have been found in the transitional zone between these facies. These conical, lined burrows are typically interpreted as dwelling or resting traces of sea anemones. Different aspects of the burrows’ structure are visible on the tops, soles, and sides of beds. Sedimentary structures in this interval include mudcracks and microbial fabrics, and adjacent beds contain Skolithos. The Conichnus-bearing interval contains a few beds with low-diversity body fossil assemblages (e.g., lingulids and Cyrtospirifer), in contrast with the base of the section, which possesses a diverse marine fauna (primarily brachiopods). The Conichnus of Tioga are smaller than many occurrences described previously (diameter equals 4.5-9.5 mm, height equals 3+ times the diameter, where visible). Other, less well-preserved cnidarian ichnofossils (e.g., Bergaueria) have been described elsewhere in the Upper Devonian Appalachian Basin. Thus, sea anemones were not uncommon along the shores of the Catskill Sea. The Tioga specimens show interesting features such as disturbed laminae (equilibrium structures) representing adjustment by the sea anemones to background sedimentation. The trace makers were also able to exhume and reposition themselves after significant depositional events (several cm of sediment, equivalent to the depth of the trace). In some specimens, the burrows are aligned in chains, possibly representing asexual reproduction by binary fission.<br />
<br />
<span id="NAME">''' Vanessa Boukili'''</span><br />
<br> Refining ecological restoration techniques in the tropics <br><br />
Enrichment planting is a commonly used restoration technique, which is applied to increase species diversity or environmental services during forest regeneration. Our study provides guidance in selecting species for restoration activities, and is among the first to directly link species performance across different environmental conditions to easily measured plant functional traits. We used an experimental approach to test whether species’ ecological characteristics influence the ability of seedlings to survive in three successional stages. In October 2010 we transplanted seedlings of six species (three secondary-growth specialists and three old-growth specialists) into old-growth forest, second-growth forest, and pasture plots at La Selva Biological Station in Costa Rica. Secondary-growth specialists possess fast-resource acquisition traits- such as high specific leaf area and low leaf toughness- that promote fast growth rates. Old-growth specialists, on the other hand, possess resource-conservation traits that promote survival over growth. We monitored seedling survival monthly for 1.3 years. Growth rates of survivors were assessed after 6 and 16 months (final harvest will be completed in March 2012). We use logistic and linear statistical models to relate species survival and growth rates to leaf functional traits and environmental conditions in each plot.<br />
<br />
<span id="NAME">''' Jeffrey Divino'''</span><br />
<br> Hold the salt! How sticklebacks deal with changes in salinity <br><br />
The ability to maintain internal ion homeostasis in freshwater or saltwater has enabled euryhaline fishes to colonize a wide range of aquatic habitats. However, the energetic cost of this osmoregulation is high because it involves active transport mechanisms that pump ions against electrochemical gradients, often occurring at the gill epithelia-water interface. For euryhaline populations presently occupying stable environmental salinities, will relaxed selection on hypo- or hyperosmoregulation result in a loss of that capacity, or alternatively, can these fish still acclimate to a wide range of salinities? My research seeks to answer this question in a Pacific northwest lineage of threespine stickleback (Gasterosteus aculeatus) consisting of distinct anadromous and lake ecotypes, which descended from an extant marine ancestor following the glacial retreat ca. 10,000 years ago. I raised embryos from each group at a common salinity and later transferred juveniles into either freshwater (<0.5 ppt) or saltwater (35 ppt) for two weeks. I then examined gill tissue from survivors to compare activity of an important ion transport protein involved in osmoregulation, sodium-potassium ATPase (NKA). Survival of lake and marine juveniles was highest in the salinity treatments that approximated native conditions. NKA activity differed among populations and was 19% higher the saltwater treatment overall. Within populations, fish tended to increase NKA activity in response to seawater, in some cases by 26-38%. These stickleback populations have physiologically diverged in their toleration of and cellular osmoregulatory response to foreign salinities. Local salinity adaptation may be an important ecological characteristic that isolates aquatic organisms.<br />
----<br />
[[Category:Graduate Research Symposium]]<br />
[[Category:Graduate Student Resources]]<br />
__NOTOC__</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Graduate_Student_Symposium_2012&diff=20803Graduate Student Symposium 20122012-02-10T18:41:01Z<p>Jeffrey Divino: </p>
<hr />
<div><center> <big>''' <br />
== Saturday, March 3, 2012 == <br />
==== Biology/Physics Building Room 130, 9:00am to ~ 4:00pm ====<br />
'''</big> </center> <br><br />
<br><br />
The '''EEB Graduate Student Symposium''' is an all day event where graduate students present their research to other graduate students and faculty. Any EEB graduate student can present: BSMS, masters, PhD, old and new students. New graduate students usually present research ideas or preliminary data, while those more ‘seasoned’ students present their most recent results, often in preparation for upcoming spring and summer meetings. <br />
<br><br />
<center>[[Image:picheader1.gif]]</center><br />
__NOEDITSECTION__<br />
==Schedule==<br />
{| border="1" cellpadding="2" <br />
!style="background:#efefef;" width="80" align="center"|Time<br />
!style="background:#efefef;" width="120"|Speaker<br />
!style="background:#efefef;" width="450"|Title<br />
|- <br />
!style="background:#efefef;"| 8:30-9:00 || || Coffee & Tea<br />
|- <br />
| 9:00-9:15 || || Welcome address <br />
|- <br />
| 9:15-9:30 || || <br />
|- <br />
| 9:30-9:45 || BILL || Snake tongue flicking stuff<br />
|- <br />
| 9:45-10:00 || || <br />
|- <br />
| 10:00-10:15 || || <br />
|- <br />
| 10:15-10:30 || Jon Velotta || Comparative analysis of the alewife gill transcriptome<br />
|- <br />
!style="background:#efefef;"| 10:30-11:00 || || '''Morning Break - Drinks and Fruit'''<br />
|- <br />
| 11:00-11:15 || Jessie Rack || TBA<br />
|- <br />
| 11:15-11:30 || Jayme Csonka || Late Devonian Conichnus from Tioga, Pennsylvania: Evidence of Asexual Sea Anemone Reproduction<br />
|- <br />
| 11:30-11:45 || Brigette Zacharczenko || Caterpillar mysteries: mimicry and extreme phenotypic changes<br />
|- <br />
| 11:45-12:00 || Jeffrey Divino || Hold the salt! How sticklebacks deal with changes in salinity <br />
|- <br />
!style="background:#efefef;"| 12:00-1:30 || || Lunch - Sandwiches and Salad<br />
|- <br />
| 1:30-2:00 || Dr. Massimo Pigliucci, Professor, Department of Philosophy, CUNY-Lehman and CUNY-Graduate Center || Keynote Address: On the many meanings of "doing theory" in biology<br />
|- <br />
| 2:00-2:15 || || <br />
|- <br />
| 2:15-2:30 || Manette Sandor || Remnant Trees<br />
|- <br />
| 2:30-2:45 || ||<br />
|- <br />
| 2:45-3:00 || ||<br />
|- <br />
| 3:00-3:15 || ||<br />
|- <br />
| 3:15-3:30 || ||<br />
|- <br />
| 3:30-3:45 || || <br />
|- <br />
!style="background:#efefef;" | 3:45-4:00 || || '''Speed Talks'''<br />
|- <br />
| 3:45-3:50 ||Kasey Pregler || <br />
|- <br />
| 3:50-3:55 || || <br />
|- <br />
| 3:55-4:00 || ||<br />
|- <br />
|}<br />
<center>[[Image:picheader1.gif]]</center><br />
<br />
__NOEDITSECTION__<br />
==Abstracts==<br />
<br />
<span id="NAME">''' Name'''</span><br />
<br> Title <br><br />
Abstract<br />
<br />
<span id= "NAME"> '''Dr. Massimo Pigliucci''' </span><br />
<br> Keynote Address: On the many meanings of "doing theory" in biology <br><br />
“Theoretical biology” is a surprisingly heterogeneous field, partly because it encompasses “doing theory” across disciplines as diverse as molecular biology, systematics, ecology and evolutionary biology. Moreover, it is done in a stunning variety of different ways, using anything from formal analytical models to computer simulations, from graphic representations to verbal arguments. In this talk I explore a number of aspects of what it means to do theoretical biology, and how they compare with the allegedly much more restricted sense of theory in the physical sciences. I also tackle a recent trend toward the presentation of all-encompassing theories in the biological sciences, from general theories of ecology to a recent attempt to provide a conceptual framework for the entire set of biological disciplines. Finally, I discuss the roles played by philosophers of science in criticizing and shaping biological theorizing.<br />
<br />
<span id="NAME">''' Jayme Csonka '''</span><br />
<br>Late Devonian Conichnus from Tioga, Pennsylvania: Evidence of Asexual Sea Anemone Reproduction <br><br />
A long section of Famennian (Late Devonian) strata along US Route 15 in Tioga, Pennsylvania exposes the transition between the shallow marine Lock Haven Formation and the terrestrial Catskill Formation. Numerous specimens of the ichnofossil Conichnus have been found in the transitional zone between these facies. These conical, lined burrows are typically interpreted as dwelling or resting traces of sea anemones. Different aspects of the burrows’ structure are visible on the tops, soles, and sides of beds. Sedimentary structures in this interval include mudcracks and microbial fabrics, and adjacent beds contain Skolithos. The Conichnus-bearing interval contains a few beds with low-diversity body fossil assemblages (e.g., lingulids and Cyrtospirifer), in contrast with the base of the section, which possesses a diverse marine fauna (primarily brachiopods). The Conichnus of Tioga are smaller than many occurrences described previously (diameter equals 4.5-9.5 mm, height equals 3+ times the diameter, where visible). Other, less well-preserved cnidarian ichnofossils (e.g., Bergaueria) have been described elsewhere in the Upper Devonian Appalachian Basin. Thus, sea anemones were not uncommon along the shores of the Catskill Sea. The Tioga specimens show interesting features such as disturbed laminae (equilibrium structures) representing adjustment by the sea anemones to background sedimentation. The trace makers were also able to exhume and reposition themselves after significant depositional events (several cm of sediment, equivalent to the depth of the trace). In some specimens, the burrows are aligned in chains, possibly representing asexual reproduction by binary fission.<br />
<br />
----<br />
[[Category:Graduate Research Symposium]]<br />
[[Category:Graduate Student Resources]]<br />
__NOTOC__</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Seminar_speaker_sign-up&diff=20725Seminar speaker sign-up2012-02-06T17:02:57Z<p>Jeffrey Divino: </p>
<hr />
<div>'''Seminar Speaker: Matt Niemiller''' <br><br />
'''Institution: Yale University''' <br><br />
'''Web site: [http://www.herpetology.us/niemiller/ Matt's website]<br><br />
<br><br />
'''Seminar Title: Evolutionary insights on the origin and conservation of subterranean fishes and salamanders''' <br><br />
'''Faculty or Student Contact: Elizabeth Jockusch & Beth Timpe''' <br />
==Thursday, February 9, 2012 ==<br />
{|border=1 cellpadding=8<br />
| '''Time''' || '''Name''' || '''Room''' <br />
<br />
<br />
<br />
|-<br />
| 9:00 a.m. || Jon Velotta ; Jeffrey Divino || BioPharm 205B<br />
|-<br />
| 9:30 a.m. || Jessie Rack || BioPharm 211<br />
|-<br />
| 10:00 a.m. || Plant Genomics Candidate Seminar ||IMS20 <br />
|-<br />
| 11:00 a.m. || Chris Elphick || BioPharm 300A<br />
|-<br />
| 11:30 a.m. || Kurt Schwenk || BioPharm 600<br />
|-<br />
| 12:00 p.m. || Grad and Post-doc Lunch || Bamford Room <br />
|-<br />
| 1:00 p.m. || Margaret Rubega || Biopharm 500<br />
|-<br />
| 1:30 p.m. ||Beth Timpe || BioPharm 318<br />
|-<br />
| 2:00 p.m. || Roberta Engel || BioPharm 322<br />
|-<br />
| 2:30 p.m. ||Mark Urban || BioPharm 200a<br />
|-<br />
| 3:00 p.m. || Elizabeth Jockusch || BioPharm 305B<br />
|-<br />
| 3:30 p.m. || coffee & cookies || Bamford Room <br />
|-<br />
| 4:00 p.m. || Seminar: "Evolutionary insights on the origin and conservation of subterranean fishes and salamanders"|| BPB 130<br />
|-<br />
| Dinner 6:00 p.m. ||Dinner at the Willimantic Brewing Company and Main Street Cafe|| Jockusch lab +...<br />
|-<br />
<br />
<br />
|-<br />
|}</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Vertlunch&diff=20670Vertlunch2012-02-04T00:15:50Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE VERTLUNCH PAGE—SPRING 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6480 Seminar in Vertebrate Biology a.k.a. VertLunch.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructors'''==<br />
<br/><br />
''In alphabetical order:''<br/><br />
<br />
'''Eric Schultz''' (eric.schultz@uconn.edu) - Ichthyology (freshwater and marine bony fish, functional ecology, life history evolution)<br/><br />
'''Kurt Schwenk''' (kurt.schwenk@uconn.edu) - Herpetology (lizards/snakes, functional and evolutionary morphology)<br/><br />
'''Mark Urban''' (mark.urban@uconn.edu) - Herpetology (salamanders, community and landscape ecology)<br/><br />
'''Kentwood Wells''' (kentwood.wells@uconn.edu) - Herpetology (frogs, social behavior, communication)<br/><br/><br />
<br/><br />
=='''Who We Are'''==<br />
<br/><br />
'''SPRING 2012 PICTURES ARE HERE! - IF YOUR PICTURE IS NOT HERE OR IF YOU WANT A DIFFERENT ONE, PLEASE EMAIL IT TO KURT''' (kurt.schwenk@uconn.edu)<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Vertlunch_People_Spr12}}<br />
:'''Vertlunch People Spring 2012<br />
<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form - contact Schultz, Schwenk or Wells to obtain)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
[[Image:BillRyersonMugShot.jpg|thumb|right|We've just learned why Bill left Tampa in a hurry. It's not good. Watch yourselves! He's easy to spot - he's a little runt of a guy... (click on the photo to get a better look) Photo by Tampa PD]]<br />
[[Image:Racertongueflick.gif |thumb|Black racer wagging its tongue like a dog (click on pic to see animation!). Photo by T. Landberg]]<br />
[[Image:Copperhead Tongue-Flick sm.jpg |thumb|Copperhead (''Agkistrodon contortrix'') tongue-flicking. Photo by K. Schwenk and C. Smith.]]<br />
[[Image:Corytophanes_hernandezii_Hurme.jpg |thumb|A helmeted iguana, ''Corytophanes hernandezii'', in Belize. Photo by K. Hurme.]]<br />
[[Image:Molly_christmas2008.JPG |thumb|A spoiled domestic dog, ''Canis lupus familiaris'', in Connecticut. Photo by Evan Schultz.]]<br />
[[Image:DiegoBuster.jpg |thumb|Huge, slimy green reptile accompanied by an iguana. Photo by T. Landberg with K. Schwenk's camera]]<br />
[[Image:Kristiina_agalychnis.jpg |thumb|Tropical treefrog, ''Agalychnis'', with hideous, parasitic growth. Photo by C. Smith]]<br />
[[Image:KDWellsFentonCrop.jpg |thumb|Our fearless leader. Photo by K. Schwenk]]<br />
[[Image:KDWellsDipnetCrop.jpg |thumb|Our fearless leader after unfortunate dipnet accident. Photo by K. Schwenk]]<br />
[[Image:SchultzCrayfishEarring.jpg |thumb|Resident ich, Dr. Eric 'Gonopodium' Schultz of UConn attended closely by resident ick of the Fenton River, Dr. 'Pierce Your Ear For You? Crayfish. Photo by K. Hurme]]<br />
<br />
<br/><br />
<br />
=='''Papers to Download for Discussion'''==<br />
<br/><br />
'''JANUARY 20'''<br/><br />
<br/><br />
Elizabeth Timpe<br/><br/><br />
Snake constriction<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/SnakeConstrictionHeartbeat12.pdf}}<br />
:SnakeConstrictionHeartbeat12.pdf<br />
Background:<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/GreeneBurghardtConstriction78.pdf}}<br />
:GreeneBurghardtConstriction78.pdf<br />
[[Image:PythonSebaeCostrictsSquirrelWeb.jpg|center|frame|African rock python constricts and ingests ground squirrel.]]<br />
<br/><br />
'''JANUARY 27'''[[Image:Paleokidney Figure.jpg|thumb]]<br/><br />
<br/><br />
Aquatic Origin of Vertebrates - Jeffrey Divino <br />
:<br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Ditrich07_marineAncestryOfVerts.pdf}} Ditrich07_estuarineAncestryOfVerts.pdf<br />
<br/><br/><br/><br />
'''FEBRUARY 3'''<br/><br />
<br/><br />
Exerimental Evidence of Population-Specific Marine Spatial Distributions of Chinook Salmon, Oncorhynchus tshawytscha - Heidi Golden<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Quinn2011MigrationGeneticsSalmon.pdf}}<br />
Quinn2011MigrationGeneticsSalmon.pdf<br />
[[Image:ChinookSalmonMigrating.jpg|center|frame|Chinook salmon migrating upstream.]]<br />
<br/><br/> <br />
'''FEBRUARY 10'''<br/> <br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 17'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 24'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 2'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 9'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 16'''<br/><br />
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<br />
<br/><br/><br />
<br />
'''MARCH 23'''<br/><br />
<br/><br />
<br />
<br><br />
<br />
<br><br><br />
<br />
'''MARCH 30'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 6'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 13'''<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 20'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 27'''<br/><br />
<br/><br />
<br />
<br/><br/><br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Vertlunch&diff=20669Vertlunch2012-02-04T00:14:01Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE VERTLUNCH PAGE—SPRING 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6480 Seminar in Vertebrate Biology a.k.a. VertLunch.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructors'''==<br />
<br/><br />
''In alphabetical order:''<br/><br />
<br />
'''Eric Schultz''' (eric.schultz@uconn.edu) - Ichthyology (freshwater and marine bony fish, functional ecology, life history evolution)<br/><br />
'''Kurt Schwenk''' (kurt.schwenk@uconn.edu) - Herpetology (lizards/snakes, functional and evolutionary morphology)<br/><br />
'''Mark Urban''' (mark.urban@uconn.edu) - Herpetology (salamanders, community and landscape ecology)<br/><br />
'''Kentwood Wells''' (kentwood.wells@uconn.edu) - Herpetology (frogs, social behavior, communication)<br/><br/><br />
<br/><br />
=='''Who We Are'''==<br />
<br/><br />
'''SPRING 2012 PICTURES ARE HERE! - IF YOUR PICTURE IS NOT HERE OR IF YOU WANT A DIFFERENT ONE, PLEASE EMAIL IT TO KURT''' (kurt.schwenk@uconn.edu)<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Vertlunch_People_Spr12}}<br />
:'''Vertlunch People Spring 2012<br />
<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form - contact Schultz, Schwenk or Wells to obtain)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
[[Image:BillRyersonMugShot.jpg|thumb|right|We've just learned why Bill left Tampa in a hurry. It's not good. Watch yourselves! He's easy to spot - he's a little runt of a guy... (click on the photo to get a better look) Photo by Tampa PD]]<br />
[[Image:Racertongueflick.gif |thumb|Black racer wagging its tongue like a dog (click on pic to see animation!). Photo by T. Landberg]]<br />
[[Image:Copperhead Tongue-Flick sm.jpg |thumb|Copperhead (''Agkistrodon contortrix'') tongue-flicking. Photo by K. Schwenk and C. Smith.]]<br />
[[Image:Corytophanes_hernandezii_Hurme.jpg |thumb|A helmeted iguana, ''Corytophanes hernandezii'', in Belize. Photo by K. Hurme.]]<br />
[[Image:Molly_christmas2008.JPG |thumb|A spoiled domestic dog, ''Canis lupus familiaris'', in Connecticut. Photo by Evan Schultz.]]<br />
[[Image:DiegoBuster.jpg |thumb|Huge, slimy green reptile accompanied by an iguana. Photo by T. Landberg with K. Schwenk's camera]]<br />
[[Image:Kristiina_agalychnis.jpg |thumb|Tropical treefrog, ''Agalychnis'', with hideous, parasitic growth. Photo by C. Smith]]<br />
[[Image:KDWellsFentonCrop.jpg |thumb|Our fearless leader. Photo by K. Schwenk]]<br />
[[Image:KDWellsDipnetCrop.jpg |thumb|Our fearless leader after unfortunate dipnet accident. Photo by K. Schwenk]]<br />
[[Image:SchultzCrayfishEarring.jpg |thumb|Resident ich, Dr. Eric 'Gonopodium' Schultz of UConn attended closely by resident ick of the Fenton River, Dr. 'Pierce Your Ear For You? Crayfish. Photo by K. Hurme]]<br />
<br />
<br/><br />
<br />
=='''Papers to Download for Discussion'''==<br />
<br/><br />
'''JANUARY 20'''<br/><br />
<br/><br />
Elizabeth Timpe<br/><br/><br />
Snake constriction<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/SnakeConstrictionHeartbeat12.pdf}}<br />
:SnakeConstrictionHeartbeat12.pdf<br />
Background:<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/GreeneBurghardtConstriction78.pdf}}<br />
:GreeneBurghardtConstriction78.pdf<br />
[[Image:PythonSebaeCostrictsSquirrelWeb.jpg|center|frame|African rock python constricts and ingests ground squirrel.]]<br />
<br/><br />
'''JANUARY 27'''<br/><br />
<br/><br />
Aquatic Origin of Vertebrates - Jeffrey Divino [[Image:Paleokidney Figure.jpg|thumb]]<br />
:<br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Ditrich07_marineAncestryOfVerts.pdf}} Ditrich07_estuarineAncestryOfVerts.pdf<br />
<br/><br/><br/><br />
'''FEBRUARY 3'''<br/><br />
<br/><br />
Exerimental Evidence of Population-Specific Marine Spatial Distributions of Chinook Salmon, Oncorhynchus tshawytscha - Heidi Golden<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Quinn2011MigrationGeneticsSalmon.pdf}}<br />
Quinn2011MigrationGeneticsSalmon.pdf<br />
[[Image:ChinookSalmonMigrating.jpg|center|frame|Chinook salmon migrating upstream.]]<br />
<br/><br/> <br />
'''FEBRUARY 10'''<br/> <br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 17'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 24'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 2'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 9'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 16'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 23'''<br/><br />
<br/><br />
<br />
<br><br />
<br />
<br><br><br />
<br />
'''MARCH 30'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 6'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 13'''<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 20'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 27'''<br/><br />
<br/><br />
<br />
<br/><br/><br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Vertlunch&diff=20668Vertlunch2012-02-04T00:13:16Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE VERTLUNCH PAGE—SPRING 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6480 Seminar in Vertebrate Biology a.k.a. VertLunch.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructors'''==<br />
<br/><br />
''In alphabetical order:''<br/><br />
<br />
'''Eric Schultz''' (eric.schultz@uconn.edu) - Ichthyology (freshwater and marine bony fish, functional ecology, life history evolution)<br/><br />
'''Kurt Schwenk''' (kurt.schwenk@uconn.edu) - Herpetology (lizards/snakes, functional and evolutionary morphology)<br/><br />
'''Mark Urban''' (mark.urban@uconn.edu) - Herpetology (salamanders, community and landscape ecology)<br/><br />
'''Kentwood Wells''' (kentwood.wells@uconn.edu) - Herpetology (frogs, social behavior, communication)<br/><br/><br />
<br/><br />
=='''Who We Are'''==<br />
<br/><br />
'''SPRING 2012 PICTURES ARE HERE! - IF YOUR PICTURE IS NOT HERE OR IF YOU WANT A DIFFERENT ONE, PLEASE EMAIL IT TO KURT''' (kurt.schwenk@uconn.edu)<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Vertlunch_People_Spr12}}<br />
:'''Vertlunch People Spring 2012<br />
<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form - contact Schultz, Schwenk or Wells to obtain)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
[[Image:BillRyersonMugShot.jpg|thumb|right|We've just learned why Bill left Tampa in a hurry. It's not good. Watch yourselves! He's easy to spot - he's a little runt of a guy... (click on the photo to get a better look) Photo by Tampa PD]]<br />
[[Image:Racertongueflick.gif |thumb|Black racer wagging its tongue like a dog (click on pic to see animation!). Photo by T. Landberg]]<br />
[[Image:Copperhead Tongue-Flick sm.jpg |thumb|Copperhead (''Agkistrodon contortrix'') tongue-flicking. Photo by K. Schwenk and C. Smith.]]<br />
[[Image:Corytophanes_hernandezii_Hurme.jpg |thumb|A helmeted iguana, ''Corytophanes hernandezii'', in Belize. Photo by K. Hurme.]]<br />
[[Image:Molly_christmas2008.JPG |thumb|A spoiled domestic dog, ''Canis lupus familiaris'', in Connecticut. Photo by Evan Schultz.]]<br />
[[Image:DiegoBuster.jpg |thumb|Huge, slimy green reptile accompanied by an iguana. Photo by T. Landberg with K. Schwenk's camera]]<br />
[[Image:Kristiina_agalychnis.jpg |thumb|Tropical treefrog, ''Agalychnis'', with hideous, parasitic growth. Photo by C. Smith]]<br />
[[Image:KDWellsFentonCrop.jpg |thumb|Our fearless leader. Photo by K. Schwenk]]<br />
[[Image:KDWellsDipnetCrop.jpg |thumb|Our fearless leader after unfortunate dipnet accident. Photo by K. Schwenk]]<br />
[[Image:SchultzCrayfishEarring.jpg |thumb|Resident ich, Dr. Eric 'Gonopodium' Schultz of UConn attended closely by resident ick of the Fenton River, Dr. 'Pierce Your Ear For You? Crayfish. Photo by K. Hurme]]<br />
<br />
<br/><br />
<br />
=='''Papers to Download for Discussion'''==<br />
<br/><br />
'''JANUARY 20'''<br/><br />
<br/><br />
Elizabeth Timpe<br/><br/><br />
Snake constriction<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/SnakeConstrictionHeartbeat12.pdf}}<br />
:SnakeConstrictionHeartbeat12.pdf<br />
Background:<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/GreeneBurghardtConstriction78.pdf}}<br />
:GreeneBurghardtConstriction78.pdf<br />
[[Image:PythonSebaeCostrictsSquirrelWeb.jpg|center|frame|African rock python constricts and ingests ground squirrel.]]<br />
<br/><br />
'''JANUARY 27'''<br/><br />
<br/><br />
Aquatic Origin of Vertebrates - Jeffrey Divino<br />
[[Image:Paleokidney Figure.jpg|thumb]]<br />
:<br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Ditrich07_marineAncestryOfVerts.pdf}} Ditrich07_estuarineAncestryOfVerts.pdf<br />
<br/><br/><br/><br />
'''FEBRUARY 3'''<br/><br />
<br/><br />
Exerimental Evidence of Population-Specific Marine Spatial Distributions of Chinook Salmon, Oncorhynchus tshawytscha - Heidi Golden<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Quinn2011MigrationGeneticsSalmon.pdf}}<br />
Quinn2011MigrationGeneticsSalmon.pdf<br />
[[Image:ChinookSalmonMigrating.jpg|center|frame|Chinook salmon migrating upstream.]]<br />
<br/><br/> <br />
'''FEBRUARY 10'''<br/> <br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 17'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 24'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 2'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 9'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 16'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 23'''<br/><br />
<br/><br />
<br />
<br><br />
<br />
<br><br><br />
<br />
'''MARCH 30'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 6'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 13'''<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 20'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 27'''<br/><br />
<br/><br />
<br />
<br/><br/><br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Vertlunch&diff=20667Vertlunch2012-02-04T00:12:38Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE VERTLUNCH PAGE—SPRING 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6480 Seminar in Vertebrate Biology a.k.a. VertLunch.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructors'''==<br />
<br/><br />
''In alphabetical order:''<br/><br />
<br />
'''Eric Schultz''' (eric.schultz@uconn.edu) - Ichthyology (freshwater and marine bony fish, functional ecology, life history evolution)<br/><br />
'''Kurt Schwenk''' (kurt.schwenk@uconn.edu) - Herpetology (lizards/snakes, functional and evolutionary morphology)<br/><br />
'''Mark Urban''' (mark.urban@uconn.edu) - Herpetology (salamanders, community and landscape ecology)<br/><br />
'''Kentwood Wells''' (kentwood.wells@uconn.edu) - Herpetology (frogs, social behavior, communication)<br/><br/><br />
<br/><br />
=='''Who We Are'''==<br />
<br/><br />
'''SPRING 2012 PICTURES ARE HERE! - IF YOUR PICTURE IS NOT HERE OR IF YOU WANT A DIFFERENT ONE, PLEASE EMAIL IT TO KURT''' (kurt.schwenk@uconn.edu)<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Vertlunch_People_Spr12}}<br />
:'''Vertlunch People Spring 2012<br />
<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form - contact Schultz, Schwenk or Wells to obtain)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
[[Image:BillRyersonMugShot.jpg|thumb|right|We've just learned why Bill left Tampa in a hurry. It's not good. Watch yourselves! He's easy to spot - he's a little runt of a guy... (click on the photo to get a better look) Photo by Tampa PD]]<br />
[[Image:Racertongueflick.gif |thumb|Black racer wagging its tongue like a dog (click on pic to see animation!). Photo by T. Landberg]]<br />
[[Image:Copperhead Tongue-Flick sm.jpg |thumb|Copperhead (''Agkistrodon contortrix'') tongue-flicking. Photo by K. Schwenk and C. Smith.]]<br />
[[Image:Corytophanes_hernandezii_Hurme.jpg |thumb|A helmeted iguana, ''Corytophanes hernandezii'', in Belize. Photo by K. Hurme.]]<br />
[[Image:Molly_christmas2008.JPG |thumb|A spoiled domestic dog, ''Canis lupus familiaris'', in Connecticut. Photo by Evan Schultz.]]<br />
[[Image:DiegoBuster.jpg |thumb|Huge, slimy green reptile accompanied by an iguana. Photo by T. Landberg with K. Schwenk's camera]]<br />
[[Image:Kristiina_agalychnis.jpg |thumb|Tropical treefrog, ''Agalychnis'', with hideous, parasitic growth. Photo by C. Smith]]<br />
[[Image:KDWellsFentonCrop.jpg |thumb|Our fearless leader. Photo by K. Schwenk]]<br />
[[Image:KDWellsDipnetCrop.jpg |thumb|Our fearless leader after unfortunate dipnet accident. Photo by K. Schwenk]]<br />
[[Image:SchultzCrayfishEarring.jpg |thumb|Resident ich, Dr. Eric 'Gonopodium' Schultz of UConn attended closely by resident ick of the Fenton River, Dr. 'Pierce Your Ear For You? Crayfish. Photo by K. Hurme]]<br />
<br />
<br/><br />
<br />
=='''Papers to Download for Discussion'''==<br />
<br/><br />
'''JANUARY 20'''<br/><br />
<br/><br />
Elizabeth Timpe<br/><br/><br />
Snake constriction<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/SnakeConstrictionHeartbeat12.pdf}}<br />
:SnakeConstrictionHeartbeat12.pdf<br />
Background:<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/GreeneBurghardtConstriction78.pdf}}<br />
:GreeneBurghardtConstriction78.pdf<br />
[[Image:PythonSebaeCostrictsSquirrelWeb.jpg|center|frame|African rock python constricts and ingests ground squirrel.]]<br />
<br/><br />
'''JANUARY 27'''<br/><br />
<br/><br />
Aquatic Origin of Vertebrates - Jeffrey Divino<br />
[[Image:Paleokidney Figure.jpeg|thumb]]<br />
:<br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Ditrich07_marineAncestryOfVerts.pdf}} Ditrich07_estuarineAncestryOfVerts.pdf<br />
<br/><br/><br/><br />
'''FEBRUARY 3'''<br/><br />
<br/><br />
Exerimental Evidence of Population-Specific Marine Spatial Distributions of Chinook Salmon, Oncorhynchus tshawytscha - Heidi Golden<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Quinn2011MigrationGeneticsSalmon.pdf}}<br />
Quinn2011MigrationGeneticsSalmon.pdf<br />
[[Image:ChinookSalmonMigrating.jpg|center|frame|Chinook salmon migrating upstream.]]<br />
<br/><br/> <br />
'''FEBRUARY 10'''<br/> <br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 17'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 24'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 2'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 9'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 16'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 23'''<br/><br />
<br/><br />
<br />
<br><br />
<br />
<br><br><br />
<br />
'''MARCH 30'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 6'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 13'''<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 20'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 27'''<br/><br />
<br/><br />
<br />
<br/><br/><br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Vertlunch&diff=20666Vertlunch2012-02-04T00:12:04Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE VERTLUNCH PAGE—SPRING 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6480 Seminar in Vertebrate Biology a.k.a. VertLunch.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructors'''==<br />
<br/><br />
''In alphabetical order:''<br/><br />
<br />
'''Eric Schultz''' (eric.schultz@uconn.edu) - Ichthyology (freshwater and marine bony fish, functional ecology, life history evolution)<br/><br />
'''Kurt Schwenk''' (kurt.schwenk@uconn.edu) - Herpetology (lizards/snakes, functional and evolutionary morphology)<br/><br />
'''Mark Urban''' (mark.urban@uconn.edu) - Herpetology (salamanders, community and landscape ecology)<br/><br />
'''Kentwood Wells''' (kentwood.wells@uconn.edu) - Herpetology (frogs, social behavior, communication)<br/><br/><br />
<br/><br />
=='''Who We Are'''==<br />
<br/><br />
'''SPRING 2012 PICTURES ARE HERE! - IF YOUR PICTURE IS NOT HERE OR IF YOU WANT A DIFFERENT ONE, PLEASE EMAIL IT TO KURT''' (kurt.schwenk@uconn.edu)<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Vertlunch_People_Spr12}}<br />
:'''Vertlunch People Spring 2012<br />
<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form - contact Schultz, Schwenk or Wells to obtain)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
[[Image:BillRyersonMugShot.jpg|thumb|right|We've just learned why Bill left Tampa in a hurry. It's not good. Watch yourselves! He's easy to spot - he's a little runt of a guy... (click on the photo to get a better look) Photo by Tampa PD]]<br />
[[Image:Racertongueflick.gif |thumb|Black racer wagging its tongue like a dog (click on pic to see animation!). Photo by T. Landberg]]<br />
[[Image:Copperhead Tongue-Flick sm.jpg |thumb|Copperhead (''Agkistrodon contortrix'') tongue-flicking. Photo by K. Schwenk and C. Smith.]]<br />
[[Image:Corytophanes_hernandezii_Hurme.jpg |thumb|A helmeted iguana, ''Corytophanes hernandezii'', in Belize. Photo by K. Hurme.]]<br />
[[Image:Molly_christmas2008.JPG |thumb|A spoiled domestic dog, ''Canis lupus familiaris'', in Connecticut. Photo by Evan Schultz.]]<br />
[[Image:DiegoBuster.jpg |thumb|Huge, slimy green reptile accompanied by an iguana. Photo by T. Landberg with K. Schwenk's camera]]<br />
[[Image:Kristiina_agalychnis.jpg |thumb|Tropical treefrog, ''Agalychnis'', with hideous, parasitic growth. Photo by C. Smith]]<br />
[[Image:KDWellsFentonCrop.jpg |thumb|Our fearless leader. Photo by K. Schwenk]]<br />
[[Image:KDWellsDipnetCrop.jpg |thumb|Our fearless leader after unfortunate dipnet accident. Photo by K. Schwenk]]<br />
[[Image:SchultzCrayfishEarring.jpg |thumb|Resident ich, Dr. Eric 'Gonopodium' Schultz of UConn attended closely by resident ick of the Fenton River, Dr. 'Pierce Your Ear For You? Crayfish. Photo by K. Hurme]]<br />
<br />
<br/><br />
<br />
=='''Papers to Download for Discussion'''==<br />
<br/><br />
'''JANUARY 20'''<br/><br />
<br/><br />
Elizabeth Timpe<br/><br/><br />
Snake constriction<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/SnakeConstrictionHeartbeat12.pdf}}<br />
:SnakeConstrictionHeartbeat12.pdf<br />
Background:<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/GreeneBurghardtConstriction78.pdf}}<br />
:GreeneBurghardtConstriction78.pdf<br />
[[Image:PythonSebaeCostrictsSquirrelWeb.jpg|center|frame|African rock python constricts and ingests ground squirrel.]]<br />
<br/><br />
'''JANUARY 27'''<br/><br />
<br/><br />
Aquatic Origin of Vertebrates - Jeffrey Divino<br />
[[File:Paleokidney Figure.jpeg|thumb]]<br />
:<br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Ditrich07_marineAncestryOfVerts.pdf}} Ditrich07_estuarineAncestryOfVerts.pdf<br />
<br/><br/><br/><br />
'''FEBRUARY 3'''<br/><br />
<br/><br />
Exerimental Evidence of Population-Specific Marine Spatial Distributions of Chinook Salmon, Oncorhynchus tshawytscha - Heidi Golden<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Quinn2011MigrationGeneticsSalmon.pdf}}<br />
Quinn2011MigrationGeneticsSalmon.pdf<br />
[[Image:ChinookSalmonMigrating.jpg|center|frame|Chinook salmon migrating upstream.]]<br />
<br/><br/> <br />
'''FEBRUARY 10'''<br/> <br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 17'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 24'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 2'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 9'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 16'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 23'''<br/><br />
<br/><br />
<br />
<br><br />
<br />
<br><br><br />
<br />
'''MARCH 30'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 6'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 13'''<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 20'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 27'''<br/><br />
<br/><br />
<br />
<br/><br/><br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=Vertlunch&diff=20665Vertlunch2012-02-04T00:11:28Z<p>Jeffrey Divino: </p>
<hr />
<div>=='''THE VERTLUNCH PAGE—SPRING 2012 EDITION'''==<br />
<br/><br />
This page is for use by participants in EEB 6480 Seminar in Vertebrate Biology a.k.a. VertLunch.<br/><br />
<br/><br/><br />
<br />
=='''Faculty Instructors'''==<br />
<br/><br />
''In alphabetical order:''<br/><br />
<br />
'''Eric Schultz''' (eric.schultz@uconn.edu) - Ichthyology (freshwater and marine bony fish, functional ecology, life history evolution)<br/><br />
'''Kurt Schwenk''' (kurt.schwenk@uconn.edu) - Herpetology (lizards/snakes, functional and evolutionary morphology)<br/><br />
'''Mark Urban''' (mark.urban@uconn.edu) - Herpetology (salamanders, community and landscape ecology)<br/><br />
'''Kentwood Wells''' (kentwood.wells@uconn.edu) - Herpetology (frogs, social behavior, communication)<br/><br/><br />
<br/><br />
=='''Who We Are'''==<br />
<br/><br />
'''SPRING 2012 PICTURES ARE HERE! - IF YOUR PICTURE IS NOT HERE OR IF YOU WANT A DIFFERENT ONE, PLEASE EMAIL IT TO KURT''' (kurt.schwenk@uconn.edu)<br/><br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Vertlunch_People_Spr12}}<br />
:'''Vertlunch People Spring 2012<br />
<br />
<br/><br />
<br />
==<font color="#CC000">'''How to Upload a Paper to This Site'''<font color="#000000">==<br />
<br />
<br/><br />
:To upload a pdf use [http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/upload.html '''THIS FORM'''] (note that you will be asked for username and password to access the form - contact Schultz, Schwenk or Wells to obtain)<br />
:Once you have used the form to upload a pdf file, it will email you the hypertext to copy and paste below the proper date (while in 'edit' mode). For additional help on doing this, consult the instructions for hypertext links in [[Help:Contents|Help]].<br />
[[Image:BillRyersonMugShot.jpg|thumb|right|We've just learned why Bill left Tampa in a hurry. It's not good. Watch yourselves! He's easy to spot - he's a little runt of a guy... (click on the photo to get a better look) Photo by Tampa PD]]<br />
[[Image:Racertongueflick.gif |thumb|Black racer wagging its tongue like a dog (click on pic to see animation!). Photo by T. Landberg]]<br />
[[Image:Copperhead Tongue-Flick sm.jpg |thumb|Copperhead (''Agkistrodon contortrix'') tongue-flicking. Photo by K. Schwenk and C. Smith.]]<br />
[[Image:Corytophanes_hernandezii_Hurme.jpg |thumb|A helmeted iguana, ''Corytophanes hernandezii'', in Belize. Photo by K. Hurme.]]<br />
[[Image:Molly_christmas2008.JPG |thumb|A spoiled domestic dog, ''Canis lupus familiaris'', in Connecticut. Photo by Evan Schultz.]]<br />
[[Image:DiegoBuster.jpg |thumb|Huge, slimy green reptile accompanied by an iguana. Photo by T. Landberg with K. Schwenk's camera]]<br />
[[Image:Kristiina_agalychnis.jpg |thumb|Tropical treefrog, ''Agalychnis'', with hideous, parasitic growth. Photo by C. Smith]]<br />
[[Image:KDWellsFentonCrop.jpg |thumb|Our fearless leader. Photo by K. Schwenk]]<br />
[[Image:KDWellsDipnetCrop.jpg |thumb|Our fearless leader after unfortunate dipnet accident. Photo by K. Schwenk]]<br />
[[Image:SchultzCrayfishEarring.jpg |thumb|Resident ich, Dr. Eric 'Gonopodium' Schultz of UConn attended closely by resident ick of the Fenton River, Dr. 'Pierce Your Ear For You? Crayfish. Photo by K. Hurme]]<br />
<br />
<br/><br />
<br />
=='''Papers to Download for Discussion'''==<br />
<br/><br />
'''JANUARY 20'''<br/><br />
<br/><br />
Elizabeth Timpe<br/><br/><br />
Snake constriction<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/SnakeConstrictionHeartbeat12.pdf}}<br />
:SnakeConstrictionHeartbeat12.pdf<br />
Background:<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/GreeneBurghardtConstriction78.pdf}}<br />
:GreeneBurghardtConstriction78.pdf<br />
[[Image:PythonSebaeCostrictsSquirrelWeb.jpg|center|frame|African rock python constricts and ingests ground squirrel.]]<br />
<br/><br />
'''JANUARY 27'''<br/><br />
<br/><br />
Aquatic Origin of Vertebrates - Jeffrey Divino<br />
[[File|Paleokidney Figure.jpeg|thumb]]<br />
:<br />
{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Ditrich07_marineAncestryOfVerts.pdf}} Ditrich07_estuarineAncestryOfVerts.pdf<br />
<br/><br/><br/><br />
'''FEBRUARY 3'''<br/><br />
<br/><br />
Exerimental Evidence of Population-Specific Marine Spatial Distributions of Chinook Salmon, Oncorhynchus tshawytscha - Heidi Golden<br />
:{{pdf|http://hydrodictyon.eeb.uconn.edu/courses/vertlunch/restricted/Quinn2011MigrationGeneticsSalmon.pdf}}<br />
Quinn2011MigrationGeneticsSalmon.pdf<br />
[[Image:ChinookSalmonMigrating.jpg|center|frame|Chinook salmon migrating upstream.]]<br />
<br/><br/> <br />
'''FEBRUARY 10'''<br/> <br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 17'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''FEBRUARY 24'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 2'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 9'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 16'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''MARCH 23'''<br/><br />
<br/><br />
<br />
<br><br />
<br />
<br><br><br />
<br />
'''MARCH 30'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 6'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 13'''<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 20'''<br/><br />
<br/><br />
<br />
<br/><br/><br />
<br />
'''APRIL 27'''<br/><br />
<br/><br />
<br />
<br/><br/><br/><br />
<br />
[[Category:EEB Seminars]]</div>Jeffrey Divinohttp://hydrodictyon.eeb.uconn.edu/eebedia/index.php?title=File:Paleokidney_Figure.jpg&diff=20664File:Paleokidney Figure.jpg2012-02-04T00:07:16Z<p>Jeffrey Divino: </p>
<hr />
<div></div>Jeffrey Divino